heatcluster.yml

name: heatcluster test
on: [pull_request, workflow_dispatch]
jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - name: checkout
        uses: actions/checkout@v4
      
      - name: install dependencies
        run: pip3 install pandas numpy pathlib seaborn matplotlib
      
      - name: test (tab-delimited)
        run: python3 heatcluster.py -i test/small_matrix.csv

      - name: test1 (comma-delimited)
        run: python3 heatcluster.py -i test/snp-dists.txt -o test1
      
      - name: test2 (empty first row/col cell)
        run: python3 heatcluster.py -i test/blank.txt -o test2 -t png

      - name: test3 (melted - failure)
        run: python3 heatcluster.py -i test/melted.txt -o test3
      
      - name: test4 (small matrix)
        run: python3 heatcluster.py -i test/small_matrix.csv -o test4
      
      - name: test5 (medium matrix)
        run: python3 heatcluster.py -i test/med_matrix.txt -o test5
      
      - name: test6 (large matrix)
        run: python3 heatcluster.py -i test/large_matrix.csv -o test6

      - name: test7 (help)
        run: python3 heatcluster.py -h

      - name: test8 (version)
        run: python3 heatcluster.py -v

      - name: tree
        run: tree