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heatcluster.yml
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name: heatcluster test
on: [pull_request, workflow_dispatch]
jobs:
test:
runs-on: ubuntu-latest
steps:
- name: checkout
uses: actions/checkout@v4
- name: install dependencies
run: pip3 install pandas numpy pathlib seaborn seaborn_polars polars pyarrow matplotlib scipy
- name: test (tab-delimited)
run: python3 heatcluster.py -i test/small_matrix.csv
- name: test1 (comma-delimited)
run: python3 heatcluster.py -i test/snp-dists.txt -o test1
- name: test2 (empty first row/col cell)
run: python3 heatcluster.py -i test/blank.txt -o test2 -t png
- name: test3 (melted - failure)
run: python3 heatcluster.py -i test/melted.txt -o test3
- name: test4 (small matrix)
run: python3 heatcluster.py -i test/small_matrix.csv -o test4
- name: test5 (medium matrix)
run: python3 heatcluster.py -i test/med_matrix.txt -o test5
- name: test6 (large matrix)
run: python3 heatcluster.py -i test/large_matrix.csv -o test6
- name: test7 (help)
run: python3 heatcluster.py -h
- name: test8 (version)
run: python3 heatcluster.py -v
- name: tree
run: tree