Releases: EBIBioSamples/biosamples-v4
Releases · EBIBioSamples/biosamples-v4
v4.1.9
- Added a Curation Undo Pipeline to allow for removal of erroneous curations.
- Fix an issue where long attributes break the sample box UI.
v4.1.8
- Corrected error in curation pipeline which caused sample characteristics to be removed erroneously
- Added holiday message
v4.1.7
- Added libraries to enable applications to use Graylog to allow configuration of aggregated logging
- Switched to the AAP explore environment at https://explore.api.aai.ebi.ac.uk
- Updated the default AAP URL used by the BioSamples client
- Included sampletab template file in the sampletab documentation
- Included ETAG and Curation Object recipes to the BioSamples cookbook
- Removed name and API key lookup functionality from SampleTab process
BioSamples v4.1.6
- Addition of AMR structured data into BioSamples
- Submission of samples with a relationship not targeting a valid accession now return an error
- Fixed bug with Phenopacket export not able to extract medatada for Orphanet terms
- Updated user interface to use the newer version of the EBI visual framework
- Improved documentation navigation experience adopting a new menu style
4.1.3
Release 4.1.3
- Additional sample attributes required by ENA are now available including a single, top-level taxId field
- The export box for a sample is now renamed download and contains a list of serialisations that always download as a file fixing a blocked popups issue in Safari
- The search results now have an updated look and feel based on feedback from ENA
v4.1.1
- Expose the BioSchemas markup with enhanced context and Sample ontology code
- SampleTab submission pipeline has been rewrite for better robustness
- In the samples results page the sample name and the sample accession are now linking to the single sample page
- Fix various broken hyperlinks
v4.1.0
New features
GDPR:
- SampleTab submissions enforce explicit acceptance of the terms of service and the privacy information
- GDPR notices added throughout
Other:
- SampleTab where targets of relationships are neither sample name nor sample accession are now rejected, providing user additional information on the problematic data
- Bioschema.org entities are exported in BioSamples and available both in the UI - embedded in a script tag - and through the API
Bug fixes
- Solved issues with wrong header’s hyperlinks
- Solved issue with resolving relationship by name in SampleTab submissions
- Solved issue with converting DatabaseURI to external references in SampleTab submissions
- Improved special characters handling in SampleTab submissions
v4.0.7
v4.0.6
4.0.6
This is a bugfix release that addresses the following issues:
- Improves search handling of special characters in facets for searching
- Improves search handling of special characters in search terms
- Fix issue with curation link URLs
- Implemented DataCatalog, Dataset and DataRecord profiles on JSON+LD
- Add ability to control which curation domains are applied to a sample
- Updated and improved API documentation
- Updated and improved SampleTab documentation
- Fix links to XML and JSON serialisation in the UI
- Fix bug in handling special characters in SampleTab submission
- Added export pipeline to JSON file
- Added copy down pipeline, initially for organism attributes copied over derived from relationships
v4.0.5
4.0.5
This is a bugfix release that addresses the following issues:
- Improved consistency of paged search results if any of the samples are added or modified whilst paging
- Improved search update throughput by using Solr transaction log
- Updated JSON+LD format to the latest version
- Correctly accept XML sample groups and their related samples
- Fix issue related to search query terms not being applied to legacy XML and legacy JSON endpoints.
- Fix incorrect HAL links on autocomplete endpoint
- Replace SampleTab submitted relationships by name with accessions. As a consequence, they can now be consistently cross referenced by accession in user interface and API
- Improved indexing of samples when they are rapidly updated or curated
- Updated Elixir Deposition Database banner URL
- Reduce number of Zooma calls by not attempting to map "unknown" or "other" attributes
- Reduce load on OLS by ensuring Zooma does not requery OLS as any results from OLS would not be used by BioSamples