README.md

Status

European Centre for Disease Prevention and Control

An agency of the European Union

ECDC HIV Estimates Accuracy tool

The ECDC HIV Estimates Accuracy Tool is an application that uses advanced statistical methods to correct for missing values in key HIV surveillance variables as well as for reporting delay.

The tool accepts case based HIV surveillance data prepared in a specific format.

The outputs include results from pre-defined analyses in the form of a report containing tables and graphs, and datasets, in which the adjustments have been incorporated and which may be exported for further analysis.

Dependencies

External tools

1. Latex - choises vary: TinyTex, Miktex, Tex Live

R packages

1. data.table (>= 1.10.4-3)
2. foreign (>= 0.8-0)
3. grid (>= 3.0.0)
4. ggplot2 (>= 2.2.1)
5. graphics (>= 3.0.0)
6. jomo (>= 2.5-1)
7. knitr (>= 1.17)
8. mice (>= 2.46.0)
9. mitools (>= 2.3)
10. readxl (>= 1.0.0)
11. rmarkdown (>= 1.6)
12. shiny (>= 1.0.5)
13. shinycssloaders (>= 0.2.0)
14. shinydashboard (>= 0.6.1)
15. shinyjs (>= 0.9.1)
16. stats (>= 3.0.0)
17. utils (>= 3.0.0)
18. quantreg (>= 5.33)
19. yaml (>= 2.1.14)

plus dependencies these packages bring.

License

See the LICENSE file for license rights and limitations (EUPL-1.2).