diff --git a/ensembl/conf/ini-files/felis_catus.ini b/ensembl/conf/ini-files/felis_catus.ini index a89e2bb35..10063ba11 100644 --- a/ensembl/conf/ini-files/felis_catus.ini +++ b/ensembl/conf/ini-files/felis_catus.ini @@ -60,21 +60,21 @@ ENSEMBL_SEARCH_IDXS = [ Domain Family Gene GenomicAlignment Sequence ] SEARCH_TEXT = RDX -VARIATION_PARAM = rs43782442 -VARIATION_TEXT = rs43782442 +VARIATION_PARAM = rs785285775 +VARIATION_TEXT = rs785285775 PHENOTYPE_PARAM = 104 PHENOTYPE_TEXT = Hair, long ENSEMBL_SOUND = Mee-OW! -VEP_HGVS = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000034678.2:c.774-1157G>A\nENSFCAT00000003354.5:c.6del -VEP_ID = rs783677247\nrs783242934\nrs784481506 -VEP_VCF = X 57184 . G T . . .\nA1 89599 . G A . . .\nC1 49505 . TC T . . . -VEP_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C: -VEP_ENSEMBL = X 57184 57184 G/T 1\nA1 89599 89599 G/A 1\nC1 49506 49506 C/- 1 - -VR_ID = rs783677247\nrs783242934\nrs784481506 -VR_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C: -VR_HGVSG = NC_018738.3:g.794817A>G\nNC_018738.3:g.399892C>T\nNC_018738.3:g.794919T>G -VR_HGVSC = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000011707.4:c.-47+16G>A\nENSFCAT00000003354.5:c.6del -VR_HGVSP = ENSFCAP00000054411.1:p.Thr559Ala\nNC_018738.3:g.1396662dup\nENSFCAP00000054411.1:p.Ser593Ala +VEP_HGVS = ENSFCAT00000026400.4:c.4C>A\nENSFCAT00000071667.1:c.18+16G>A\nENSFCAT00000011879.6:c.5del +VEP_ID = rs785285775\nrs783112172\nrs784345823 +VEP_VCF = X 23750244 . C A . . .\nA1 94828934 . G A . . .\nC1 37198227 . CA C . . . +VEP_SPDI = NC_018741.3:23750243:C:A\nNC_018723.3:94828933:G:A\nNC_018730.3:37198227:A: +VEP_ENSEMBL = X 23750244 23750244 C/A 1\nA1 94828934 94828934 G/A 1\nC1 37198228 37198228 A/- 1 + +VR_ID = rs785285775\nrs783112172\nrs784345823 +VR_SPDI = NC_018741.3:23750243:C:A\nNC_018723.3:94828933:G:A\nNC_018730.3:37198227:A: +VR_HGVSG = NC_018741.3:g.23750244C>A\nNC_018723.3:g.94828934G>A\nNC_018730.3:g.37198228del +VR_HGVSC = ENSFCAT00000026400.4:c.4C>A\nENSFCAT00000071667.1:c.18+16G>A\nENSFCAT00000011879.6:c.5del +VR_HGVSP = ENSFCAP00000020470.1:p.Pro2Thr\nENSFCAP00000011018.5:p.Gln2del\nENSFCAP00000011018.5:p.Gln2ArgfsTer5 diff --git a/ensembl/conf/ini-files/felis_catus_abyssinian.ini b/ensembl/conf/ini-files/felis_catus_abyssinian.ini index 9602b4822..7798e4af3 100644 --- a/ensembl/conf/ini-files/felis_catus_abyssinian.ini +++ b/ensembl/conf/ini-files/felis_catus_abyssinian.ini @@ -14,4 +14,26 @@ SPECIES_RELEASE_VERSION = 9 [ENSEMBL_EXTERNAL_INDEXERS] [EXTERNAL_GENOME_BROWSERS] - \ No newline at end of file + + +[SAMPLE_DATA] + +SEARCH_TEXT = RDX + +VARIATION_PARAM = rs43782442 +VARIATION_TEXT = rs43782442 + +PHENOTYPE_PARAM = 104 +PHENOTYPE_TEXT = Hair, long + +VEP_HGVS = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000034678.2:c.774-1157G>A\nENSFCAT00000003354.5:c.6del +VEP_ID = rs783677247\nrs783242934\nrs784481506 +VEP_VCF = X 57184 . G T . . .\nA1 89599 . G A . . .\nC1 49505 . TC T . . . +VEP_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C: +VEP_ENSEMBL = X 57184 57184 G/T 1\nA1 89599 89599 G/A 1\nC1 49506 49506 C/- 1 + +VR_ID = rs783677247\nrs783242934\nrs784481506 +VR_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C: +VR_HGVSG = NC_018738.3:g.794817A>G\nNC_018738.3:g.399892C>T\nNC_018738.3:g.794919T>G +VR_HGVSC = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000011707.4:c.-47+16G>A\nENSFCAT00000003354.5:c.6del +VR_HGVSP = ENSFCAP00000054411.1:p.Thr559Ala\nNC_018738.3:g.1396662dup\nENSFCAP00000054411.1:p.Ser593Ala \ No newline at end of file