From 860b56ab47969da6ca4b316664c0ed74f80ed895 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Thu, 20 Jun 2024 17:42:53 +0000
Subject: [PATCH 01/24] ci: bump softprops/action-gh-release from 2.0.5 to
 2.0.6

Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2.0.5 to 2.0.6.
- [Release notes](https://github.com/softprops/action-gh-release/releases)
- [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md)
- [Commits](https://github.com/softprops/action-gh-release/compare/v2.0.5...v2.0.6)

---
updated-dependencies:
- dependency-name: softprops/action-gh-release
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 .github/workflows/prepare_release.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/prepare_release.yaml b/.github/workflows/prepare_release.yaml
index 07f3fabe8..db9322a0d 100644
--- a/.github/workflows/prepare_release.yaml
+++ b/.github/workflows/prepare_release.yaml
@@ -151,7 +151,7 @@ jobs:
       # Create a new release
       - name: Create release
         id: create_release
-        uses: softprops/action-gh-release@v2.0.5
+        uses: softprops/action-gh-release@v2.0.6
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         with:

From 110ca9b37cc5105d753d174d8235f7979715296d Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 1 Jul 2024 17:07:58 +0000
Subject: [PATCH 02/24] ci: bump arduino/setup-arduino-cli from 1.1.2 to 2.0.0

Bumps [arduino/setup-arduino-cli](https://github.com/arduino/setup-arduino-cli) from 1.1.2 to 2.0.0.
- [Release notes](https://github.com/arduino/setup-arduino-cli/releases)
- [Commits](https://github.com/arduino/setup-arduino-cli/compare/v1.1.2...v2.0.0)

---
updated-dependencies:
- dependency-name: arduino/setup-arduino-cli
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 .github/workflows/build_examples.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_examples.yaml b/.github/workflows/build_examples.yaml
index bfdc620ee..3d000ae43 100644
--- a/.github/workflows/build_examples.yaml
+++ b/.github/workflows/build_examples.yaml
@@ -123,7 +123,7 @@ jobs:
       # We use the `arduino/setup-arduino-cli` action to install and
       # configure the Arduino CLI on the system.
       - name: Setup Arduino CLI
-        uses: arduino/setup-arduino-cli@v1.1.2
+        uses: arduino/setup-arduino-cli@v2.0.0
 
       - name: Restore Arduino platforms and libraries
         uses: actions/cache@v4

From a5ba55c3479a78c5c91a90690fcf0b27af72053a Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 19 Jul 2024 17:35:45 +0000
Subject: [PATCH 03/24] ci: bump softprops/action-gh-release from 2.0.6 to
 2.0.8

Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2.0.6 to 2.0.8.
- [Release notes](https://github.com/softprops/action-gh-release/releases)
- [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md)
- [Commits](https://github.com/softprops/action-gh-release/compare/v2.0.6...v2.0.8)

---
updated-dependencies:
- dependency-name: softprops/action-gh-release
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 .github/workflows/prepare_release.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/prepare_release.yaml b/.github/workflows/prepare_release.yaml
index db9322a0d..47eba14bb 100644
--- a/.github/workflows/prepare_release.yaml
+++ b/.github/workflows/prepare_release.yaml
@@ -151,7 +151,7 @@ jobs:
       # Create a new release
       - name: Create release
         id: create_release
-        uses: softprops/action-gh-release@v2.0.6
+        uses: softprops/action-gh-release@v2.0.8
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         with:

From 1ff8b3c89823247d2a5917f94f9ea42df2d4fada Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 8 Aug 2024 16:04:36 -0400
Subject: [PATCH 04/24] Switch to reusable workflows

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .github/dependabot.yml                        |   2 +-
 .github/workflows/build_documentation.yaml    | 144 +---
 .github/workflows/prepare_release.yaml        | 184 +----
 .../workflows/verify_library_structure.yaml   |  95 +--
 .gitignore                                    |  32 +-
 .../generate-documentation.sh                 |  43 --
 continuous_integration/generate_job_matrix.py | 106 ++-
 .../install-deps-arduino-cli.sh               | 159 -----
 .../install-deps-platformio.sh                | 133 ----
 .../install-test-version-arduino-cli.sh       |  44 --
 docs/Doxyfile                                 | 661 +++++++++++-------
 examples/example_dependencies.json            |  26 +
 12 files changed, 577 insertions(+), 1052 deletions(-)
 delete mode 100644 continuous_integration/generate-documentation.sh
 delete mode 100644 continuous_integration/install-deps-arduino-cli.sh
 delete mode 100644 continuous_integration/install-deps-platformio.sh
 delete mode 100644 continuous_integration/install-test-version-arduino-cli.sh
 create mode 100644 examples/example_dependencies.json

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 0f88bec19..7318fd3ae 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -3,7 +3,7 @@ updates:
   - package-ecosystem: 'github-actions'
     directory: '/'
     schedule:
-      interval: 'daily'
+      interval: 'weekly'
     labels:
       - 'CI/CD'
     commit-message:
diff --git a/.github/workflows/build_documentation.yaml b/.github/workflows/build_documentation.yaml
index a42b55b39..c834db08f 100644
--- a/.github/workflows/build_documentation.yaml
+++ b/.github/workflows/build_documentation.yaml
@@ -1,13 +1,19 @@
-name: Check for Complete Documentation
+name: Check, Build, and Publish Documentation
 
 on:
   # Triggers the workflow on push or pull request events
   push:
   pull_request:
   # Trigger when a release is created
+  # NOTE: This will only trigger if the release is created from the UI or with a personal access token
   release:
     types:
       - published
+  # Trigger with the release workflow finishes
+  workflow_run:
+    workflows: ['Create a New Release']
+    types: [completed]
+    branches: [master]
   # Also give a manual trigger
   workflow_dispatch:
     inputs:
@@ -21,135 +27,13 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-env:
-  REBUILD_CACHE_NUMBER: 2
-  PYTHON_DEPS_ARCHIVE_NUM: 2
-  DOXYGEN_VERSION: Release_1_9_6
-  TEX_VERSION: 2019
-  # ^^ 2019 is the latest TeX live available on apt-get and that's good enough
-  GRAPHVIZ_VERSION: 2.43.0
-
 jobs:
-  check_menu_inclusion:
-    runs-on: ubuntu-latest
-    if: "!contains(github.event.head_commit.message, 'ci skip')"
-    name: Check that all classes are documented in the menu-a-la-carte example
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.x'
-
-      # Using answer from here to get the exit code and pass the output:  https://stackoverflow.com/questions/59191913/how-do-i-get-the-output-of-a-specific-step-in-github-actions
-      - name: check for classes in the menu example
-        id: check_component
-        continue-on-error: true
-        run: |
-          cd $GITHUB_WORKSPACE/continuous_integration
-          python check_component_inclusion.py 2>&1 | tee check_component.log
-          result_code=${PIPESTATUS[0]}
-          missing_menu_docs=$(cat check_component.log)
-          missing_menu_docs="${missing_menu_docs//'%'/'%25'}"
-          missing_menu_docs="${missing_menu_docs//$'\n'/'%0A'}"
-          missing_menu_docs="${missing_menu_docs//$'\r'/'%0D'}"
-          echo "missing_menu_docs=missing_menu_docs" >> $GITHUB_OUTPUT
-          if [[ $result_code ]]; then
-            echo "$(cat check_component.log)" >> $GITHUB_STEP_SUMMARY
-          else
-            echo "Valid library.json =)" >> $GITHUB_STEP_SUMMARY
-          fi
-          echo "Finished menu inclusion verification"
-          exit $result_code
-
-      - name: Create commit comment
-        uses: peter-evans/commit-comment@v3
-        if: steps.check_component.outcome=='failure'
-        with:
-          body: |
-            All sensor and variable subclasses must be included in the Menu a la Carte example
-            ${{ steps.check_component.outputs.missing_menu_docs }}
-
-      - name: Fail if cannot find all menu flags
-        id: verification_failure
-        if: steps.check_component.outcome=='failure'
-        run: exit 1
-
   doc_build:
-    runs-on: ubuntu-latest
-    if: "!contains(github.event.head_commit.message, 'ci skip')"
+    if: ${{ (! contains(github.event.head_commit.message, 'ci skip')) && (github.event_name != 'workflow_run' || (github.event_name == 'workflow_run' && github.event.workflow_run.conclusion == 'success')) }}
     name: Build documentation
-
-    steps:
-      # check out the ModularSensors repo
-      - uses: actions/checkout@v4
-        with:
-          path: code_docs/ModularSensors
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.x'
-
-      - name: Restore Python Dependencies
-        uses: actions/cache@v4
-        id: cache_python
-        with:
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-python-${{ env.REBUILD_CACHE_NUMBER }}-${{ env.PYTHON_DEPS_ARCHIVE_NUM }}
-
-      - name: Install Pygments and other m.css Python Requirements
-        run: |
-          python -m pip install --upgrade pip
-          pip3 install --upgrade --upgrade-strategy only-if-needed jinja2 Pygments beautifulsoup4
-
-      - name: Restore Doxygen, Graphviz, and TeX Live
-        id: cache_doxygen
-        uses: actions/cache@v4
-        with:
-          path: |
-            /usr/lib/x86_64-linux-gnu/texlive
-            /usr/lib/x86_64-linux-gnu/graphviz
-            doxygen-src
-          key: ${{ runner.os }}-doxygen-${{ env.REBUILD_CACHE_NUMBER }}-${{ env.DOXYGEN_VERSION }}-${{ env.TEX_VERSION }}-${{ env.GRAPHVIZ_VERSION }}
-
-      - name: Build and install doxygen and its dependencies
-        if: steps.cache_doxygen.outputs.cache-hit != 'true'
-        run: |
-          cd ${{ github.workspace }}/code_docs/ModularSensors/
-          chmod +x continuous_integration/build-install-doxygen.sh
-          sh continuous_integration/build-install-doxygen.sh
-
-      # check out my fork of m.css, for processing Doxygen output
-      - name: Checkout m.css
-        uses: actions/checkout@v4
-        with:
-          # Repository name with owner. For example, actions/checkout
-          repository: SRGDamia1/m.css
-          path: code_docs/m.css
-
-      - name: Generate all the documentation
-        continue-on-error: true
-        run: |
-          cd ${{ github.workspace }}/code_docs/ModularSensors/
-          chmod +x continuous_integration/generate-documentation.sh
-          sh continuous_integration/generate-documentation.sh 2>&1 | tee doxygen_run_output.log
-          result_code=${PIPESTATUS[0]}
-          echo "doxygen_warnings=$(cat docs/output_doxygen.log)" >> $GITHUB_OUTPUT
-          echo "mcss_warnings=$(cat docs/output_mcss.log)" >> $GITHUB_OUTPUT
-          echo "## Doxygen completed with the following warnings:" >> $GITHUB_STEP_SUMMARY
-          echo "$(cat docs/output_doxygen.log)" >> $GITHUB_STEP_SUMMARY
-          echo "" >> $GITHUB_STEP_SUMMARY
-          echo "## mcss Doxygen post-processing completed with the following warnings:" >> $GITHUB_STEP_SUMMARY
-          echo "$(cat docs/output_mcss.log)" >> $GITHUB_STEP_SUMMARY
-          echo "Finished generating documentation"
-          exit $result_code
-
-      - name: Deploy to github pages
-        if: "(github.event_name == 'release' && github.event.action == 'published') || (github.event_name == 'workflow_dispatch' && github.event.inputs.publish == 'true')"
-        uses: peaceiris/actions-gh-pages@v4.0.0
-        with:
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: ${{ github.workspace }}/code_docs/ModularSensorsDoxygen/m.css
+    uses: EnviroDIY/workflows/.github/workflows/build_documentation.yaml@main
+    with:
+      use_graphviz: false
+      publish: ${{ (github.event_name == 'release' && github.event.action == 'published') || (github.event_name == 'workflow_run' && github.event.workflow_run.conclusion == 'success')  || (github.event_name == 'workflow_dispatch' && github.event.inputs.publish == 'true')}}
+      rebuild_cache_number: 1
+    secrets: inherit
diff --git a/.github/workflows/prepare_release.yaml b/.github/workflows/prepare_release.yaml
index 07f3fabe8..62f618b3e 100644
--- a/.github/workflows/prepare_release.yaml
+++ b/.github/workflows/prepare_release.yaml
@@ -7,165 +7,43 @@ on:
       - 'VERSION' # Push events when the VERSION file changes
   workflow_dispatch:
 
-name: Prepare a new release and add release assets
+name: Create a New Release
 
 env:
   PLATFORMIO_AUTH_TOKEN: ${{ secrets.PLATFORMIO_AUTH_TOKEN }}
 
 jobs:
-  release:
-    name: Prepare a new release
+  wait_for_checks:
+    if: ${{ github.event_name != 'workflow_dispatch' }}
+    strategy:
+      matrix:
+        req_workflow:
+          [
+            verify_library_structure.yaml,
+            build_examples.yaml,
+            build_documentation.yaml,
+          ]
+    name: Wait for Checks to complete
     runs-on: ubuntu-latest
-
     steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-
-      - name: Set environment variable for current library version
-        run: |
-          echo "::debug::Get the current version number"
-          VER=$(cat VERSION)
-          ZIP_FILE="ModularSensors_Dependencies_${VER}"
-          echo "VERSION=$VER" >> $GITHUB_ENV
-          echo "ZIP_NAME=$ZIP_FILE" >> $GITHUB_ENV
-
-      - name: Set up python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.x'
-
-      - name: Install PlatformIO
-        run: |
-          python -m pip install --upgrade pip
-          pip install --upgrade platformio
-
-      # Install *all* the libraries!
-      - name: Install the libraries
-        run: |
-          chmod +x continuous_integration/install-deps-platformio.sh
-          sh continuous_integration/install-deps-platformio.sh
-
-      - name: Install ModularSensors from the master branch
-        run: |
-          pio pkg install -g -l https://github.com/EnviroDIY/ModularSensors
-
-      # Uninstall graphics libraries from Adafruit
-      - name: Uninstall Adafruit GFX Library library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit GFX Library"
-          pio pkg uninstall -g -l "adafruit/Adafruit GFX Library"
-
-      - name: Uninstall Adafruit NeoPixel library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit NeoPixel"
-          pio pkg uninstall -g -l "adafruit/Adafruit NeoPixel"
-
-      - name: Uninstall Adafruit SSD1306 library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit SSD1306"
-          pio pkg uninstall -g -l "adafruit/Adafruit SSD1306"
-
-      - name: Uninstall Adafruit ADXL343 library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit ADXL343"
-          pio pkg uninstall -g -l "adafruit/Adafruit ADXL343"
-
-      - name: Uninstall Adafruit STMPE610 library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit STMPE610"
-          pio pkg uninstall -g -l "adafruit/Adafruit STMPE610"
-
-      - name: Uninstall Adafruit TouchScreen library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit TouchScreen"
-          pio pkg uninstall -g -l "adafruit/Adafruit TouchScreen"
-
-      - name: Uninstall Adafruit ILI9341 library
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing Adafruit ILI9341"
-          pio pkg uninstall -g -l "adafruit/Adafruit ILI9341"
-
-      # zip up all the installed libraries
-      # need to cd into the pio directory so we don't get extra junk directories
-      - name: Zip libraries
-        run: |
-          echo "::debug::Listing global libraries"
-          pio pkg list -g -v --only-libraries
-          echo "::debug::Zipping global libraries"
-          cd /home/runner/.platformio/
-          zip ${{ env.ZIP_NAME }}.zip -r lib
-          mv ${{ env.ZIP_NAME }}.zip $GITHUB_WORKSPACE
-          cd $GITHUB_WORKSPACE
-          ls
-
-      # Remove some extras from the zip
-      - name: Remove git files from the zip
-        continue-on-error: true
-        run: |
-          echo "::debug::Deleting extra files to decrease size of zip"
-          echo "::debug::Removing Git folders"
-          zip -d -q ${{ env.ZIP_NAME }} "*/.gitattributes" "*/.gitignore" "*/.gitmodules" "*/.github/*" "*.sh"  "*/Doxyfile" "*/.travis.yml"
-      - name: Remove other pdfs from the zip
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing other pdfs"
-          zip -d -q libraries "*/doc/*.pdf"
-      - name: Remove TinyGSM extras from the zip
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing TinyGSM extras"
-          zip -d -q libraries "*/TinyGSM/extras/*"
-      - name: Remove YosemitechModbus extras from the zip
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing YosemitechModbus extras"
-          zip -d -q libraries "*/YosemitechModbus/doc/*"
-      - name: Remove SDFat extras from the zip
-        continue-on-error: true
-        run: |
-          echo "::debug::Removing SDFat extras"
-          zip -d -q libraries "*/SdFat/extras/*"
-
-      - name: Get change log entry for release notes
-        id: changelog_reader
-        uses: mindsers/changelog-reader-action@v2
-        with:
-          path: ChangeLog.md
-          version: ${{ env.VERSION }}
-          # validation_depth: 10
-
-      # I use the first line of the change log entry as the name, so read it here
-      # - name: Get release name
-      #   id: get_release_name
-      #   run: |
-      #     release_name=$(echo ${{steps.changelog_reader.outputs.changes}} | cut -d '\n' -f 1)
-      #      echo "release_name=release_name" >> $GITHUB_OUTPUT
-
-      # Create a new release
-      - name: Create release
-        id: create_release
-        uses: softprops/action-gh-release@v2.0.5
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - name: Wait on Workflow
+        uses: ArcticLampyrid/action-wait-for-workflow@v1.2.0
         with:
-          tag_name: ${{ format('v{0}',env.VERSION) }}
-          # name: ${{ format('v{0} - {1}', env.VERSION, steps.get_release_name.outputs.release_name) }}
-          name: ${{ format('v{0}',env.VERSION) }}
-          draft: ${{ steps.changelog_reader.outputs.status == 'unreleased' }}
-          prerelease: ${{ steps.changelog_reader.outputs.status == 'prereleased' }}
-          body: ${{ steps.changelog_reader.outputs.changes }}
-          generate_release_notes: false
-          files: ${{ format('./{0}.zip', env.ZIP_NAME) }}
-          fail_on_unmatched_files: true
+          workflow: ${{ matrix.req_workflow }}
+          sha: ${{ github.sha || github.event.pull_request.head.sha || github.event.pull_request.head.ref }} # optional
+          allowed-conclusions: |
+            success
+            cancelled
+            skipped
 
-      # Publish the new release to the PlatformIO package manager
-      - name: Publish release to the PlatformIO package manager
-        id: publish-pio
-        run: pio package publish --owner envirodiy --non-interactive
+  release:
+    name: Prepare a new release
+    needs: [wait_for_checks]
+    if: |
+      always() &&
+      (needs.wait_for_checks.result == 'success' || needs.wait_for_checks.result == 'skipped')
+    uses: EnviroDIY/workflows/.github/workflows/prepare_release.yaml@main
+    secrets: inherit
+    with:
+      library-manager: 'update'
+      library-compliance: 'strict'
diff --git a/.github/workflows/verify_library_structure.yaml b/.github/workflows/verify_library_structure.yaml
index 2d8aad016..bf9958771 100644
--- a/.github/workflows/verify_library_structure.yaml
+++ b/.github/workflows/verify_library_structure.yaml
@@ -8,91 +8,10 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-  pio_lint:
-    name: Verify library.json for PlatformIO
-    runs-on: ubuntu-latest
-    if: "!contains(github.event.head_commit.message, 'ci skip')"
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.x'
-
-      - name: Install PlatformIO
-        run: |
-          python -m pip install --upgrade pip
-          pip install --upgrade platformio
-
-      - name: Run python script to verify structure of library.json for PlatformIO
-        id: validate_manifest
-        continue-on-error: true
-        run: |
-          python continuous_integration/validate_manifest.py 2>&1 | tee validate_manifest.log
-          result_code=${PIPESTATUS[0]}
-          manifest_errors=$(cat validate_manifest.log)
-          manifest_errors="${manifest_errors//'%'/'%25'}"
-          manifest_errors="${manifest_errors//$'\n'/'%0A'}"
-          manifest_errors="${manifest_errors//$'\r'/'%0D'}"
-          echo "manifest_errors=manifest_errors" >> $GITHUB_OUTPUT
-          echo "$(cat validate_manifest.log)" >> $GITHUB_STEP_SUMMARY
-          echo "Finished library.json manifest verification"
-          exit $result_code
-
-      - name: Create commit comment
-        uses: peter-evans/commit-comment@v3
-        if: steps.validate_manifest.outcome=='failure'
-        with:
-          body: |
-            Please correct errors in the library.json file!
-            ${{ steps.validate_manifest.outputs.manifest_errors }}
-
-      - name: Fail if cannot verify json
-        id: verification_failure
-        if: steps.validate_manifest.outcome=='failure'
-        run: exit 1
-
-  arduino_lint:
-    name: Validate library structure for Arduino Library Manager inclusion
-    runs-on: ubuntu-latest
-    if: "!contains(github.event.head_commit.message, 'ci skip')"
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Run Arduino-Lint to verify the library structure and syntax for the Arduino IDE
-        id: validate_library
-        continue-on-error: true
-        env:
-          ARDUINO_LINT_LIBRARY_MANAGER_INDEXING: true
-        uses: arduino/arduino-lint-action@v1
-        with:
-          project-type: library
-          library-manager: submit
-          compliance: strict
-          verbose: true
-          report-file: arduino_lint.json
-
-      - name: beautify_lint_output
-        id: beautify_output
-        run: |
-          python continuous_integration/beautify_arduino_lint_log.py
-          lint_errors=$(cat arduino_lint.md)
-          lint_errors="${lint_errors//'%'/'%25'}"
-          lint_errors="${lint_errors//$'\n'/'%0A'}"
-          lint_errors="${lint_errors//$'\r'/'%0D'}"
-          echo "lint_errors=lint_errors" >> $GITHUB_OUTPUT
-          echo "$(cat arduino_lint.md)" >> $GITHUB_STEP_SUMMARY
-
-      - name: Create commit comment
-        uses: peter-evans/commit-comment@v3
-        if: steps.validate_library.outcome=='failure'
-        with:
-          body: ${{ steps.beautify_output.outputs.lint_errors }}
-
-      - name: Fail if cannot verify library structure
-        id: verification_failure
-        if: steps.validate_library.outcome=='failure'
-        run: exit 1
+  verify_library_structure:
+    name: Validate library structure
+    if: ${{ ! contains(github.event.head_commit.message, 'ci skip') }}
+    uses: EnviroDIY/workflows/.github/workflows/verify_library_structure.yaml@main
+    with:
+      library-manager: 'update'
+      library-compliance: 'strict'
diff --git a/.gitignore b/.gitignore
index 9c278f49b..ec6909142 100644
--- a/.gitignore
+++ b/.gitignore
@@ -47,22 +47,22 @@ Network Trash Folder
 Temporary Items
 .apdisk
 
+# Python
+__pycache__/
+
 # PyCharm
 .idea/
 
-# Atom / PlatformIO
-.pio
-.pioenvs
-.piolibdeps
-.pio
-.pio/libdeps
-.pio/build
+# Atom
+.atomrc.cson
+
+# PlatformIO
 .pio/*
 .clang_complete
 .gcc-flags.json
-.atomrc.cson
 lib/*
 include/*
+boards/*
 /platformio.ini
 .sconsign.dblite
 
@@ -80,21 +80,13 @@ YosemitechDO/
 LongTermLogger/
 barometric_correction/
 3G_Test/
-
-__pycache__/
 runDoxygen.bat
 docs/examples/*
-output_doxygen.log
-output_doxygen_run.log
-output_mcss_run.log
-output_mcss.log
 docs/examples.dox_x
 platformio_extra_envs.ini
 src/sensors/table.md
 cache
-docs/output_copyFunctions.log
-docs/output_documentExamples.log
-docs/output_fixSectionsInXml.log
+output_*.log
 examples/DRWI_Mayfly1_Wifi_5tm_ds18b20_1/DRWI_Mayfly1_Wifi_5tm_ds18b20_1.ino
 clang_format_all.bat
 arduino_lint.md
@@ -109,6 +101,8 @@ continuous_integration_artifacts/*
 arduino_cli.log
 **/sensor_tests/*
 docs/Doxyfile.bak
-continuous_integration/output_check_component_inclusion.log
 continuous_integration/platformio_ci_local.ini
-pioScripts/install_shared_deps.py
+runDoxygen_archive.bat
+generateKeywords.bat
+update_path.bat
+pio_common_libdeps.ini
diff --git a/continuous_integration/generate-documentation.sh b/continuous_integration/generate-documentation.sh
deleted file mode 100644
index 5985eeaa1..000000000
--- a/continuous_integration/generate-documentation.sh
+++ /dev/null
@@ -1,43 +0,0 @@
-#!/bin/bash
-
-# Makes the bash script print out every command before it is executed, except echo
-trap '[[ $BASH_COMMAND != echo* ]] && echo $BASH_COMMAND' DEBUG
-
-# Script modified from scripts by Jeroen de Bruijn, thephez, and Adafruit
-# https://gist.github.com/vidavidorra/548ffbcdae99d752da02
-# https://github.com/thephez/doxygen-travis-build
-# https://learn.adafruit.com/the-well-automated-arduino-library/travis-ci
-
-# Exit with nonzero exit code if anything fails
-set -e
-
-cd $GITHUB_WORKSPACE/code_docs/m.css
-echo "\n\e[32mUpdate the style sheets\e[0m"
-cd $GITHUB_WORKSPACE/code_docs/m.css/css/EnviroDIY
-python $GITHUB_WORKSPACE/code_docs/m.css/css/postprocess.py "m-EnviroDIY.css"
-python $GITHUB_WORKSPACE/code_docs/m.css/css/postprocess.py "m-EnviroDIY.css" "m-documentation.css" -o "m-EnviroDIY+documentation.compiled.css"
-python $GITHUB_WORKSPACE/code_docs/m.css/css/postprocess.py "m-EnviroDIY.css" "m-theme-EnviroDIY.css" "m-documentation.css" --no-import -o "m-EnviroDIY.documentation.compiled.css"
-cp $GITHUB_WORKSPACE/code_docs/m.css/css/EnviroDIY/m-EnviroDIY+documentation.compiled.css $GITHUB_WORKSPACE/code_docs/ModularSensors/docs/css
-
-cd $GITHUB_WORKSPACE/code_docs/ModularSensors/docs
-
-# echo "\n\e[32mCreating dox files from example read-me files\e[0m"
-# python documentExamples.py
-
-echo "\n\e[32mCurrent Doxygen version...\e[0m"
-$GITHUB_WORKSPACE/doxygen-src/build/bin/doxygen -v 2>&1
-
-# Redirect both stderr and stdout to the log file AND the console.
-echo "\n\e[32mGenerating Doxygen code documentation...\e[0m"
-$GITHUB_WORKSPACE/doxygen-src/build/bin/doxygen Doxyfile 2>&1
-
-echo "\n\e[32mFixing errant xml section names in examples as generated by Doxygen...\e[0m"
-python fixSectionsInXml.py
-
-# echo "\n\e[32mFixing copied function documentation in group documentation\e[0m"
-# python fixFunctionsInGroups.py
-
-python $GITHUB_WORKSPACE/code_docs/m.css/documentation/doxygen.py "mcss-conf.py" --no-doxygen --output "$GITHUB_WORKSPACE/code_docs/ModularSensors/docs/output_mcss.log" --templates "$GITHUB_WORKSPACE/code_docs/m.css/documentation/templates/EnviroDIY"
-
-echo "\n\e[32mCopying function documentation\e[0m"
-python copyFunctions.py
diff --git a/continuous_integration/generate_job_matrix.py b/continuous_integration/generate_job_matrix.py
index 495ee97ff..b8c12ebde 100644
--- a/continuous_integration/generate_job_matrix.py
+++ b/continuous_integration/generate_job_matrix.py
@@ -8,35 +8,54 @@
 import re
 import os
 import copy
+import requests
+
+# %%
+# set verbose
+use_verbose = False
+if "RUNNER_DEBUG" in os.environ.keys() and os.environ["RUNNER_DEBUG"] == "1":
+    use_verbose = True
+
 
 # %%
 # Some working directories
+
 # The workspace directory
 if "GITHUB_WORKSPACE" in os.environ.keys():
     workspace_dir = os.environ.get("GITHUB_WORKSPACE")
 else:
-    fileDir = os.path.dirname(os.path.realpath("__file__"))
-    workspace_dir = os.path.join(fileDir, "../")
-    workspace_dir = os.path.abspath(os.path.realpath(workspace_dir))
+    workspace_dir = os.getcwd()
+workspace_path = os.path.abspath(os.path.realpath(workspace_dir))
+print(f"Workspace Path: {workspace_path}")
 
 # The examples directory
 examples_dir = "./examples/"
 examples_path = os.path.join(workspace_dir, examples_dir)
 examples_path = os.path.abspath(os.path.realpath(examples_path))
+print(f"Examples Path: {examples_path}")
 
 # The continuous integration directory
 ci_dir = "./continuous_integration/"
 ci_path = os.path.join(workspace_dir, ci_dir)
 ci_path = os.path.abspath(os.path.realpath(ci_path))
+print(f"Continuous Integration Path: {ci_path}")
+if not os.path.exists(ci_path):
+    print(f"Creating the directory for CI: {ci_path}")
+    os.makedirs(ci_path, exist_ok=True)
 
 # A directory of files to save and upload as artifacts to use in future jobs
 artifact_dir = os.path.join(
     os.path.join(workspace_dir, "continuous_integration_artifacts")
 )
+artifact_path = os.path.abspath(os.path.realpath(artifact_dir))
+print(f"Artifact Path: {artifact_path}")
 if not os.path.exists(artifact_dir):
+    print(f"Creating the directory for artifacts: {artifact_path}")
     os.makedirs(artifact_dir)
 
 compilers = ["Arduino CLI", "PlatformIO"]
+
+
 # %%
 # The locations of some important files
 
@@ -46,6 +65,18 @@
     os.path.join(examples_path, menu_example_name), menu_example_name + ".ino"
 )
 
+
+# %%
+# Pull files to convert between boards and platforms and FQBNs
+response = requests.get(
+    "https://raw.githubusercontent.com/EnviroDIY/workflows/main/scripts/platformio_to_arduino_boards.json"
+)
+with open(os.path.join(ci_path, "platformio_to_arduino_boards.json"), "wb") as f:
+    f.write(response.content)
+# Translation between board names on PlatformIO and the Arduino CLI
+with open(os.path.join(ci_path, "platformio_to_arduino_boards.json")) as f:
+    pio_to_acli = json.load(f)
+
 # Find all of the non-menu examples
 non_menu_examples = [
     f
@@ -54,13 +85,30 @@
     and f not in [".history", "logger_test", menu_example_name]
 ]
 
-# Arduino CLI configurations
+# %%
+# read configurations based on existing files and environment variables
+
+# Arduino CLI configuration
+# Always use the generic one from the shared workflow repository
 if "GITHUB_WORKSPACE" in os.environ.keys():
-    arduino_cli_config = os.path.join(ci_dir, "arduino_cli.yaml")
+    arduino_cli_config = os.path.join(ci_path, "arduino_cli.yaml")
+    if not os.path.isfile(arduino_cli_config):
+        # download the default file
+        response = requests.get(
+            "https://raw.githubusercontent.com/EnviroDIY/workflows/main/scripts/arduino_cli.yaml"
+        )
+        # copy to the CI directory
+        with open(os.path.join(ci_path, "arduino_cli.yaml"), "wb") as f:
+            f.write(response.content)
+        # also copy to the artifacts directory
+        shutil.copyfile(
+            os.path.join(ci_path, "arduino_cli.yaml"),
+            os.path.join(artifact_path, "arduino_cli.yaml"),
+        )
 else:
     arduino_cli_config = os.path.join(ci_dir, "arduino_cli_local.yaml")
 
-# PlatformIO configurations
+# PlatformIO configuration
 pio_config_file = os.path.join(ci_path, "platformio.ini")
 pio_extra_config_file = os.path.join(ci_path, "platformio_extra_flags.ini")
 pio_config = ProjectConfig(pio_config_file)
@@ -88,33 +136,39 @@ def get_example_filepath(subfolder_name):
 
 
 def create_arduino_cli_command(pio_env_name: str, code_subfolder: str) -> str:
-    arduino_command_arguments = [
+    arduino_command_args = [
         "arduino-cli",
         "compile",
-        # "--verbose",
+    ]
+    if use_verbose:
+        arduino_command_args += ["--verbose"]
+    arduino_command_args += [
         "--warnings",
         "more",
         "--config-file",
-        arduino_cli_config,
+        f'"{arduino_cli_config}"',
         "--format",
         "text",
         "--fqbn",
         pio_to_acli[pio_config.get("env:{}".format(pio_env_name), "board")]["fqbn"],
-        os.path.join(examples_path, code_subfolder),
+        f'"{os.path.join(examples_path, code_subfolder)}"',
     ]
-    return " ".join(arduino_command_arguments)
+    return " ".join(arduino_command_args)
 
 
 def create_pio_ci_command(pio_env_file: str, pio_env: str, code_subfolder: str) -> str:
     pio_command_args = [
         "pio",
         "ci",
-        # "--verbose",
+    ]
+    if use_verbose:
+        pio_command_args += ["--verbose"]
+    pio_command_args += [
         "--project-conf",
-        pio_env_file,
+        f'"{pio_env_file}"',
         "--environment",
         pio_env,
-        os.path.join(examples_path, code_subfolder),
+        f'"{os.path.join(examples_path, code_subfolder)}"',
     ]
     return " ".join(pio_command_args)
 
@@ -134,7 +188,7 @@ def add_log_to_command(command: str, group_title: str) -> List:
     )
     command_list.append("echo ::endgroup::")
     command_list.append(
-        'if [ "$result_code" -eq "0" ]; then echo -e "\e[32m{title} successfully compiled\e[0m"; else echo -e "\e[31m{title} failed to compile\e[0m"; fi'.format(
+        'if [ "$result_code" -eq "0" ]; then echo -e "\\e[32m{title} successfully compiled\\e[0m"; else echo -e "\\e[31m{title} failed to compile\\e[0m"; fi'.format(
             title=group_title
         )
     )
@@ -247,7 +301,7 @@ def modify_example_filename(example_subfolder, in_file_defines):
     preped_folder_name = "{}_{}".format(example_subfolder, suffix).replace(
         "_a_la_carte", ""
     )
-    prepped_ex_folder = os.path.join(artifact_dir, preped_folder_name)
+    prepped_ex_folder = os.path.join(artifact_path, preped_folder_name)
     prepped_ex_file = os.path.join(prepped_ex_folder, preped_folder_name + ".ino")
 
     return prepped_ex_folder, prepped_ex_file
@@ -296,7 +350,7 @@ def extend_pio_config(added_envs):
 
     new_config = copy.deepcopy(pio_config)
     new_config_path = os.path.join(
-        artifact_dir, "test_ci_" + "_".join(added_envs) + ".ini"
+        artifact_path, "test_ci_" + "_".join(added_envs) + ".ini"
     )
 
     for added_env in added_envs:
@@ -658,17 +712,23 @@ def extend_pio_config(added_envs):
 # Convert commands in the matrix into bash scripts
 for matrix_job in arduino_job_matrix + pio_job_matrix:
     bash_file_name = matrix_job["job_name"].replace(" ", "") + ".sh"
-    bash_out = open(os.path.join(artifact_dir, bash_file_name), "w+")
+    print(f"Writing bash file to {os.path.join(artifact_path, bash_file_name)}")
+    bash_out = open(os.path.join(artifact_path, bash_file_name), "w+")
     bash_out.write("#!/bin/bash\n\n")
     bash_out.write(
-        "# Makes the bash script print out every command before it is executed, except echo\n"
-    )
-    bash_out.write(
-        "trap '[[ $BASH_COMMAND != echo* ]] && echo $BASH_COMMAND' DEBUG\n\n"
+        """
+set -e # Exit with nonzero exit code if anything fails
+if [ "$RUNNER_DEBUG" = "1" ]; then
+    echo "Enabling debugging!"
+    set -v # Prints shell input lines as they are read.
+    set -x # Print command traces before executing command.
+fi
+
+"""
     )
     bash_out.write(matrix_job["command"])
     bash_out.close()
-    matrix_job["script"] = os.path.join(artifact_dir, bash_file_name)
+    matrix_job["script"] = os.path.join(artifact_path, bash_file_name)
 
 # Remove the command from the dictionaries before outputting them
 for items in arduino_job_matrix + pio_job_matrix:
diff --git a/continuous_integration/install-deps-arduino-cli.sh b/continuous_integration/install-deps-arduino-cli.sh
deleted file mode 100644
index 61ba26a4b..000000000
--- a/continuous_integration/install-deps-arduino-cli.sh
+++ /dev/null
@@ -1,159 +0,0 @@
-#!/bin/bash
-
-# Makes the bash script print out every command before it is executed, except echo
-trap '[[ $BASH_COMMAND != echo* ]] && echo $BASH_COMMAND' DEBUG
-
-# Exit with nonzero exit code if anything fails
-set -e
-
-echo "\n\e[32mCurrent Arduino CLI version:\e[0m"
-arduino-cli version
-
-echo "::group::Installing Platforms and Frameworks"
-echo "\n\e[32mUpdating the core index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core update-index
-
-echo "\n\e[32mInstalling the Arduino AVR Core\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core install arduino:avr
-
-echo "\n\e[32mInstalling the EnviroDIY AVR Core\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core install EnviroDIY:avr
-
-echo "\n\e[32mInstalling the Arduino SAMD Core\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core install arduino:samd
-
-echo "\n\e[32mInstalling the Adafruit SAMD Core\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core install adafruit:samd
-
-echo "\n\e[32mUpdating the core index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core update-index
-
-echo "\n\e[32mUpgrading all cores\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core upgrade
-
-echo "\n\e[32mCurrently installed cores:\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml core list
-echo "::endgroup::"
-
-
-echo "::group::Installing Libraries"
-echo "\n\e[32mUpdating the library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib update-index
-
-echo "\n\e[32mInstalling EnviroDIY DS3231 library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install EnviroDIY_DS3231
-
-echo "\n\e[32mInstalling RTCZero library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install RTCZero
-
-echo "\n\e[32mInstalling EnableInterrupt library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install EnableInterrupt
-
-echo "\n\e[32mInstalling SdFat library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install SdFat
-
-echo "\n\e[32mInstalling TinyGSM library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install TinyGSM
-
-echo "\n\e[32mInstalling PubSubClient library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install PubSubClient
-
-echo "\n\e[32mInstalling Adafruit BusIO library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit BusIO"
-
-echo "\n\e[32mInstalling Adafruit Unified Sensor library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit Unified Sensor"
-
-echo "\n\e[32mDownloading Soligen fork of Adafruit_ADS1X15 as a zip"
-# Soligen fork needs to be manually unzipped and moved because the CLI chokes on the library name not matching the h file
-curl -L  --retry 15 --retry-delay 0 https://github.com/soligen2010/Adafruit_ADS1X15/archive/master.zip --create-dirs -o home/arduino/downloads/Adafruit_ADS1X15.zip
-echo "\e[32mDecompressing Adafruit_ADS1X15\e[0m"
-unzip -q -o home/arduino/downloads/Adafruit_ADS1X15.zip -d home/arduino/downloads/
-echo "\e[32mMoving Adafruit_ADS1X15 to the libraries folder\e[0m"
-mkdir -p home/arduino/user/libraries/Adafruit_ADS1X15
-mv home/arduino/downloads/Adafruit_ADS1X15-master/* home/arduino/user/libraries/Adafruit_ADS1X15
-
-echo "\n\e[32mInstalling Adafruit AM2315 library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit AM2315"
-
-echo "\n\e[32mInstalling Adafruit BME280 Library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit BME280 Library"
-
-echo "\n\e[32mInstalling DHT sensor library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "DHT sensor library"
-
-echo "\n\e[32mInstalling Adafruit INA219 library from Arduino library index - excluding dependencies\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit INA219" --no-deps
-
-echo "\n\e[32mInstalling Adafruit MPL115A2 library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit MPL115A2"
-
-echo "\n\e[32mInstalling Adafruit SHT4x Library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "Adafruit SHT4x Library"
-
-echo "\n\e[32mInstalling Martin Lindupp's BMP388 Library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install "BMP388_DEV"
-
-echo "\n\e[32mInstalling OneWire library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install OneWire
-
-echo "\n\e[32mInstalling DallasTemperature library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install DallasTemperature
-
-echo "\n\e[32mDownloading External Interrupt version of the SDI-12 library as a zip\e[0m"
-# The "external interrupt" version needs to be installed from a zip because the Arduino CLI cannot pull from a branch
-curl -L  --retry 15 --retry-delay 0 https://github.com/EnviroDIY/Arduino-SDI-12/archive/refs/heads/ExtInts.zip --create-dirs -o home/arduino/downloads/EnviroDIY_SDI12_ExtInts.zip
-echo "\e[32mDecompressing EnviroDIY_SDI12_ExtInts\e[0m"
-unzip -q -o home/arduino/downloads/EnviroDIY_SDI12_ExtInts.zip -d home/arduino/downloads/
-echo "\e[32mMoving EnviroDIY_SDI12_ExtInts to the libraries folder\e[0m"
-mkdir -p home/arduino/user/libraries/EnviroDIY_SDI12_ExtInts
-mv home/arduino/downloads/Arduino-SDI-12-ExtInts/* home/arduino/user/libraries/EnviroDIY_SDI12_ExtInts
-
-echo "\n\e[32mInstalling NorthernWidget MS5803 library from GitHub\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install --git-url https://github.com/NorthernWidget/MS5803.git
-
-echo "\n\e[32mInstalling EnviroDIY Tally_Library from GitHub"
-# NOTE:  This only works because the DEV_I2C branch is the main branch of the EnviroDIY fork
-# The Arduino CLI can only install from whatever is assigned as the default branch on GitHub
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install --git-url https://github.com/EnviroDIY/Tally_Library.git
-
-echo "\n\e[32mInstalling EnviroDIY SensorModbusMaster library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install SensorModbusMaster
-
-echo "\n\e[32mInstalling EnviroDIY KellerModbus library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install KellerModbus
-
-echo "\n\e[32mInstalling EnviroDIY YosemitechModbus library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install YosemitechModbus
-
-echo "\n\e[32mInstalling EnviroDIY GropointModbus library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install GropointModbus
-
-echo "\n\e[32mInstalling StreamDebugger library from Arduino library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install StreamDebugger
-
-echo "\n\e[32mInstalling AltSoftSerial library from GitHub\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install --git-url https://github.com/PaulStoffregen/AltSoftSerial.git
-
-echo "\n\e[32mInstalling SoftwareWire library from GitHub\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install --git-url https://github.com/Testato/SoftwareWire.git#v1.5.1
-
-echo "\n\e[32mInstalling NeoSWSerial library from GitHub\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib install --git-url https://github.com/SRGDamia1/NeoSWSerial.git
-
-echo "\n\e[32mDownloading SoftwareSerial with External Interrupts as a zip\e[0m"
-# SoftwareSerial with External Interrupts needs to be manually unzipped and moved because the CLI chokes on the library name not matching the h file
-curl -L  --retry 15 --retry-delay 0 https://github.com/EnviroDIY/SoftwareSerial_ExternalInts/archive/master.zip --create-dirs -o home/arduino/downloads/SoftwareSerial_ExternalInts.zip
-echo "\e[32mDecompressing SoftwareSerial_ExternalInts\e[0m"
-unzip -q -o home/arduino/downloads/SoftwareSerial_ExternalInts.zip -d home/arduino/downloads/
-echo "\e[32mMoving SoftwareSerial_ExternalInts to the libraries folder\e[0m"
-mkdir -p home/arduino/user/libraries/SoftwareSerial_ExternalInts
-mv home/arduino/downloads/SoftwareSerial_ExtInts-master/* home/arduino/user/libraries/SoftwareSerial_ExternalInts
-echo "::endgroup::"
-
-
-echo "::group::Current globally installed packages"
-echo "\n\e[32mCurrently installed libraries:\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib update-index
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib list
-echo "::endgroup::"
diff --git a/continuous_integration/install-deps-platformio.sh b/continuous_integration/install-deps-platformio.sh
deleted file mode 100644
index 22219218e..000000000
--- a/continuous_integration/install-deps-platformio.sh
+++ /dev/null
@@ -1,133 +0,0 @@
-#!/bin/bash
-
-# Makes the bash script print out every command before it is executed, except echo
-trap '[[ $BASH_COMMAND != echo* ]] && echo $BASH_COMMAND' DEBUG
-
-# Exit with nonzero exit code if anything fails
-set -e
-
-echo "::group::Installing Platforms and Frameworks"
-echo "\e[32mInstalling Atmel AVR platforms \e[0m"
-pio pkg install -g --platform atmelavr
-pio pkg install -g --tool framework-arduino-avr
-pio pkg install -g --tool tool-avrdude
-pio pkg install -g --tool toolchain-atmelavr
-
-echo "\e[32mInstalling Atmel AVR framework \e[0m"
-pio pkg install -g --platform atmelmegaavr
-pio pkg install -g --tool framework-arduino-megaavr
-
-echo "\e[32mInstalling Atmel SAM platform \e[0m"
-pio pkg install -g --platform atmelsam
-
-echo "\e[32mInstalling Atmel SAM framework \e[0m"
-pio pkg install -g --tool framework-arduino-samd
-pio pkg install -g --tool framework-arduino-samd-adafruit
-pio pkg install -g --tool framework-arduino-samd-sodaq
-pio pkg install -g --tool framework-cmsis
-pio pkg install -g --tool framework-cmsis-atmel
-pio pkg install -g --tool tool-bossac
-pio pkg install -g --tool toolchain-gccarmnoneeabi
-echo "::endgroup::"
-
-
-echo "::group::Installing Libraries"
-echo "\e[32m\nCurrently installed packages:\e[0m"
-pio pkg list -g -v
-
-echo "\e[32mInstalling envirodiy/EnviroDIY_DS3231\e[0m"
-pio pkg install -g --library envirodiy/EnviroDIY_DS3231
-
-echo "\e[32mInstalling arduino-libraries/RTCZero\e[0m"
-pio pkg install -g --library arduino-libraries/RTCZero
-
-echo "\e[32mInstalling greygnome/EnableInterrupt\e[0m"
-pio pkg install -g --library greygnome/EnableInterrupt
-
-echo "\e[32mInstalling greiman/SdFat\e[0m"
-pio pkg install -g --library greiman/SdFat
-
-echo "\e[32mInstalling vshymanskyy/TinyGSM\e[0m"
-pio pkg install -g --library vshymanskyy/TinyGSM
-
-echo "\e[32mInstalling knolleary/PubSubClient\e[0m"
-pio pkg install -g --library knolleary/PubSubClient
-
-echo "\e[32mInstalling adafruit/'Adafruit BusIO'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit BusIO'
-
-echo "\e[32mInstalling adafruit/'Adafruit Unified Sensor'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit Unified Sensor'
-
-echo "\e[32mInstalling https://github.com/soligen2010/Adafruit_ADS1X15.git\e[0m"
-pio pkg install -g --library https://github.com/soligen2010/Adafruit_ADS1X15.git
-
-echo "\e[32mInstalling adafruit/'Adafruit AM2315'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit AM2315'
-
-echo "\e[32mInstalling adafruit/'Adafruit BME280 Library'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit BME280 Library'
-
-echo "\e[32mInstalling adafruit/'DHT sensor library'\e[0m"
-pio pkg install -g --library adafruit/'DHT sensor library'
-
-echo "\e[32mInstalling adafruit/'Adafruit INA219'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit INA219'
-
-echo "\e[32mInstalling adafruit/'Adafruit MPL115A2'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit MPL115A2'
-
-echo "\e[32mInstalling adafruit/'Adafruit SHT'\e[0m"
-pio pkg install -g --library adafruit/'Adafruit SHT4x Library'
-
-echo "\e[32mInstalling Martin Lindupp's BMP388 Library\e[0m"
-pio pkg install -g --library MartinL1/BMP388_DEV
-
-echo "\e[32mInstalling paulstoffregen/OneWire\e[0m"
-pio pkg install -g --library paulstoffregen/OneWire
-
-echo "\e[32mInstalling milesburton/DallasTemperature\e[0m"
-pio pkg install -g --library milesburton/DallasTemperature
-
-echo "\e[32mInstalling envirodiy/SDI-12\e[0m"
-pio pkg install -g --library envirodiy/SDI-12
-
-echo "\e[32mInstalling northernwidget/MS5803\e[0m"
-pio pkg install -g --library northernwidget/MS5803
-
-echo "\e[32mInstalling https://github.com/EnviroDIY/Tally_Library.git#Dev_I2C\e[0m"
-pio pkg install -g --library https://github.com/EnviroDIY/Tally_Library.git#Dev_I2C
-
-echo "\e[32mInstalling envirodiy/SensorModbusMaster\e[0m"
-pio pkg install -g --library envirodiy/SensorModbusMaster
-
-echo "\e[32mInstalling envirodiy/KellerModbus\e[0m"
-pio pkg install -g --library envirodiy/KellerModbus
-
-echo "\e[32mInstalling envirodiy/YosemitechModbus\e[0m"
-pio pkg install -g --library envirodiy/YosemitechModbus
-
-echo "\e[32mInstalling envirodiy/GroPointModbus\e[0m"
-pio pkg install -g --library envirodiy/GroPointModbus
-
-echo "\e[32mInstalling vshymanskyy/StreamDebugger\e[0m"
-pio pkg install -g --library vshymanskyy/StreamDebugger
-
-echo "\e[32mInstalling https://github.com/PaulStoffregen/AltSoftSerial.git\e[0m"
-pio pkg install -g --library https://github.com/PaulStoffregen/AltSoftSerial.git
-
-echo "\e[32mInstalling https://github.com/Testato/SoftwareWire.git#v1.5.1\e[0m"
-pio pkg install -g --library https://github.com/Testato/SoftwareWire.git#v1.5.1
-
-echo "\e[32mInstalling https://github.com/SRGDamia1/NeoSWSerial.git\e[0m"
-pio pkg install -g --library https://github.com/SRGDamia1/NeoSWSerial.git
-
-echo "\e[32mInstalling https://github.com/EnviroDIY/SoftwareSerial_ExternalInts.git\e[0m"
-pio pkg install -g --library https://github.com/EnviroDIY/SoftwareSerial_ExternalInts.git
-echo "::endgroup::"
-
-
-echo "::group::Current globally installed packages"
-echo "\e[32m\nCurrently installed packages:\e[0m"
-pio pkg list -g -v
-echo "::endgroup::"
diff --git a/continuous_integration/install-test-version-arduino-cli.sh b/continuous_integration/install-test-version-arduino-cli.sh
deleted file mode 100644
index 74ac0f883..000000000
--- a/continuous_integration/install-test-version-arduino-cli.sh
+++ /dev/null
@@ -1,44 +0,0 @@
-#!/bin/bash
-
-# Makes the bash script print out every command before it is executed, except echo
-trap '[[ $BASH_COMMAND != echo* ]] && echo $BASH_COMMAND' DEBUG
-
-# Exit with nonzero exit code if anything fails
-set -e
-
-echo "\n\e[32mCurrent Arduino CLI version:\e[0m"
-arduino-cli version
-
-echo "\n\e[32mDeleting any archived zips\e[0m"
-rm -f home/arduino/downloads/ModularSensors.zip
-
-echo "\n\e[32mDownloading library zip from ${LIBRARY_INSTALL_ZIP}\e[0m"
-curl -L  --retry 15 --retry-delay 0 ${LIBRARY_INSTALL_ZIP} --create-dirs -o home/arduino/downloads/ModularSensors.zip
-
-echo "\n\e[32mUnzipping the library\e[0m"
-unzip -o home/arduino/downloads/ModularSensors.zip -d home/arduino/downloads/ -x "*.git/*" "continuous_integration/*" "docs/*" "examples/*"
-
-echo "\n\e[32mEnsuring no old directories exist\e[0m"
-rm -r -f home/arduino/user/libraries/ModularSensors
-
-echo "\n\e[32mCreating a new directory for the testing version of Modular sensors\e[0m"
-mkdir -p home/arduino/user/libraries/ModularSensors
-
-echo "\n\e[32mMoving the unzipped library to the new directory\e[0m"
-if [ -z "${GITHUB_HEAD_REF}" ]; then
-    echo "\n\e[36mExpected unzipped directory name (from commit SHA): home/arduino/downloads/ModularSensors-${GITHUB_SHA}\e[0m"
-    mv home/arduino/downloads/ModularSensors-${GITHUB_SHA}/* home/arduino/user/libraries/ModularSensors
-else
-    INTERNAL_ZIP_NAME=$(echo "${GITHUB_HEAD_REF}" | sed -e 's/\//-/g')
-    echo "\n\e[36mExpected unzipped directory name (from head of ${GITHUB_HEAD_REF}): home/arduino/downloads/ModularSensors-${SAVED_ZIP_NAME}\e[0m"
-    mv home/arduino/downloads/ModularSensors-${INTERNAL_ZIP_NAME}/* home/arduino/user/libraries/ModularSensors
-fi
-
-echo "\n\e[32mUpdating the library index\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib update-index
-
-echo "\n\e[32mListing libraries detected by the Arduino CLI\e[0m"
-arduino-cli --config-file continuous_integration/arduino_cli.yaml lib list
-
-echo "\n\e[32mListing the contents of the Arduino library directory\e[0m"
-ls home/arduino/user/libraries
diff --git a/docs/Doxyfile b/docs/Doxyfile
index 840f599d3..f6ceb512d 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -1,7 +1,7 @@
-# Doxyfile 1.9.6
+# Doxyfile 1.12.0
 
 # This file describes the settings to be used by the documentation system
-# doxygen (www.doxygen.org) for a project.
+# Doxygen (www.doxygen.org) for a project.
 #
 # All text after a double hash (##) is considered a comment and is placed in
 # front of the TAG it is preceding.
@@ -15,10 +15,10 @@
 #
 # Note:
 #
-# Use doxygen to compare the used configuration file with the template
+# Use Doxygen to compare the used configuration file with the template
 # configuration file:
 # doxygen -x [configFile]
-# Use doxygen to compare the used configuration file with the template
+# Use Doxygen to compare the used configuration file with the template
 # configuration file without replacing the environment variables or CMake type
 # replacement variables:
 # doxygen -x_noenv [configFile]
@@ -63,17 +63,23 @@ PROJECT_BRIEF          = "An Arduino library to give environmental sensors a com
 
 PROJECT_LOGO           = ModularSensors_ubuntu_264x55.png
 
+# With the PROJECT_ICON tag one can specify an icon that is included in the tabs
+# when the HTML document is shown. Doxygen will copy the logo to the output
+# directory.
+
+PROJECT_ICON           =
+
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
-# entered, it will be relative to the location where doxygen was started. If
+# entered, it will be relative to the location where Doxygen was started. If
 # left blank the current directory will be used.
 
 OUTPUT_DIRECTORY       = ../../ModularSensorsDoxygen
 
-# If the CREATE_SUBDIRS tag is set to YES then doxygen will create up to 4096
+# If the CREATE_SUBDIRS tag is set to YES then Doxygen will create up to 4096
 # sub-directories (in 2 levels) under the output directory of each output format
 # and will distribute the generated files over these directories. Enabling this
-# option can be useful when feeding doxygen a huge amount of source files, where
+# option can be useful when feeding Doxygen a huge amount of source files, where
 # putting all generated files in the same directory would otherwise causes
 # performance problems for the file system. Adapt CREATE_SUBDIRS_LEVEL to
 # control the number of sub-directories.
@@ -92,7 +98,7 @@ CREATE_SUBDIRS         = NO
 
 CREATE_SUBDIRS_LEVEL   = 8
 
-# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
+# If the ALLOW_UNICODE_NAMES tag is set to YES, Doxygen will allow non-ASCII
 # characters to appear in the names of generated files. If set to NO, non-ASCII
 # characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
 # U+3044.
@@ -101,7 +107,7 @@ CREATE_SUBDIRS_LEVEL   = 8
 ALLOW_UNICODE_NAMES    = NO
 
 # The OUTPUT_LANGUAGE tag is used to specify the language in which all
-# documentation generated by doxygen is written. Doxygen will use this
+# documentation generated by Doxygen is written. Doxygen will use this
 # information to generate all constant output in the proper language.
 # Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Bulgarian,
 # Catalan, Chinese, Chinese-Traditional, Croatian, Czech, Danish, Dutch, English
@@ -115,14 +121,14 @@ ALLOW_UNICODE_NAMES    = NO
 
 OUTPUT_LANGUAGE        = English
 
-# If the BRIEF_MEMBER_DESC tag is set to YES, doxygen will include brief member
+# If the BRIEF_MEMBER_DESC tag is set to YES, Doxygen will include brief member
 # descriptions after the members that are listed in the file and class
 # documentation (similar to Javadoc). Set to NO to disable this.
 # The default value is: YES.
 
 BRIEF_MEMBER_DESC      = YES
 
-# If the REPEAT_BRIEF tag is set to YES, doxygen will prepend the brief
+# If the REPEAT_BRIEF tag is set to YES, Doxygen will prepend the brief
 # description of a member or function before the detailed description
 #
 # Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
@@ -153,13 +159,13 @@ ABBREVIATE_BRIEF       = "The $name class" \
                          the
 
 # If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
-# doxygen will generate a detailed section even if there is only a brief
+# Doxygen will generate a detailed section even if there is only a brief
 # description.
 # The default value is: NO.
 
 ALWAYS_DETAILED_SEC    = NO
 
-# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
+# If the INLINE_INHERITED_MEMB tag is set to YES, Doxygen will show all
 # inherited members of a class in the documentation of that class as if those
 # members were ordinary class members. Constructors, destructors and assignment
 # operators of the base classes will not be shown.
@@ -167,7 +173,7 @@ ALWAYS_DETAILED_SEC    = NO
 
 INLINE_INHERITED_MEMB  = NO
 
-# If the FULL_PATH_NAMES tag is set to YES, doxygen will prepend the full path
+# If the FULL_PATH_NAMES tag is set to YES, Doxygen will prepend the full path
 # before files name in the file list and in the header files. If set to NO the
 # shortest path that makes the file name unique will be used
 # The default value is: YES.
@@ -177,11 +183,11 @@ FULL_PATH_NAMES        = YES
 # The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
 # Stripping is only done if one of the specified strings matches the left-hand
 # part of the path. The tag can be used to show relative paths in the file list.
-# If left blank the directory from which doxygen is run is used as the path to
+# If left blank the directory from which Doxygen is run is used as the path to
 # strip.
 #
 # Note that you can specify absolute paths here, but also relative paths, which
-# will be relative from the directory where doxygen is started.
+# will be relative from the directory where Doxygen is started.
 # This tag requires that the tag FULL_PATH_NAMES is set to YES.
 
 STRIP_FROM_PATH        = ..
@@ -195,14 +201,14 @@ STRIP_FROM_PATH        = ..
 
 STRIP_FROM_INC_PATH    =
 
-# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
+# If the SHORT_NAMES tag is set to YES, Doxygen will generate much shorter (but
 # less readable) file names. This can be useful is your file systems doesn't
 # support long names like on DOS, Mac, or CD-ROM.
 # The default value is: NO.
 
 SHORT_NAMES            = NO
 
-# If the JAVADOC_AUTOBRIEF tag is set to YES then doxygen will interpret the
+# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen will interpret the
 # first line (until the first dot) of a Javadoc-style comment as the brief
 # description. If set to NO, the Javadoc-style will behave just like regular Qt-
 # style comments (thus requiring an explicit @brief command for a brief
@@ -211,17 +217,17 @@ SHORT_NAMES            = NO
 
 JAVADOC_AUTOBRIEF      = NO
 
-# If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line
+# If the JAVADOC_BANNER tag is set to YES then Doxygen will interpret a line
 # such as
 # /***************
 # as being the beginning of a Javadoc-style comment "banner". If set to NO, the
 # Javadoc-style will behave just like regular comments and it will not be
-# interpreted by doxygen.
+# interpreted by Doxygen.
 # The default value is: NO.
 
 JAVADOC_BANNER         = NO
 
-# If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first
+# If the QT_AUTOBRIEF tag is set to YES then Doxygen will interpret the first
 # line (until the first dot) of a Qt-style comment as the brief description. If
 # set to NO, the Qt-style will behave just like regular Qt-style comments (thus
 # requiring an explicit \brief command for a brief description.)
@@ -229,7 +235,7 @@ JAVADOC_BANNER         = NO
 
 QT_AUTOBRIEF           = NO
 
-# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a
+# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen treat a
 # multi-line C++ special comment block (i.e. a block of //! or /// comments) as
 # a brief description. This used to be the default behavior. The new default is
 # to treat a multi-line C++ comment block as a detailed description. Set this
@@ -241,10 +247,10 @@ QT_AUTOBRIEF           = NO
 
 MULTILINE_CPP_IS_BRIEF = NO
 
-# By default Python docstrings are displayed as preformatted text and doxygen's
+# By default Python docstrings are displayed as preformatted text and Doxygen's
 # special commands cannot be used. By setting PYTHON_DOCSTRING to NO the
-# doxygen's special commands can be used and the contents of the docstring
-# documentation blocks is shown as doxygen documentation.
+# Doxygen's special commands can be used and the contents of the docstring
+# documentation blocks is shown as Doxygen documentation.
 # The default value is: YES.
 
 PYTHON_DOCSTRING       = YES
@@ -255,7 +261,7 @@ PYTHON_DOCSTRING       = YES
 
 INHERIT_DOCS           = YES
 
-# If the SEPARATE_MEMBER_PAGES tag is set to YES then doxygen will produce a new
+# If the SEPARATE_MEMBER_PAGES tag is set to YES then Doxygen will produce a new
 # page for each member. If set to NO, the documentation of a member will be part
 # of the file/class/namespace that contains it.
 # The default value is: NO.
@@ -342,30 +348,30 @@ OPTIMIZE_OUTPUT_SLICE  = NO
 # parses. With this tag you can assign which parser to use for a given
 # extension. Doxygen has a built-in mapping, but you can override or extend it
 # using this tag. The format is ext=language, where ext is a file extension, and
-# language is one of the parsers supported by doxygen: IDL, Java, JavaScript,
+# language is one of the parsers supported by Doxygen: IDL, Java, JavaScript,
 # Csharp (C#), C, C++, Lex, D, PHP, md (Markdown), Objective-C, Python, Slice,
 # VHDL, Fortran (fixed format Fortran: FortranFixed, free formatted Fortran:
 # FortranFree, unknown formatted Fortran: Fortran. In the later case the parser
 # tries to guess whether the code is fixed or free formatted code, this is the
-# default for Fortran type files). For instance to make doxygen treat .inc files
+# default for Fortran type files). For instance to make Doxygen treat .inc files
 # as Fortran files (default is PHP), and .f files as C (default is Fortran),
 # use: inc=Fortran f=C.
 #
 # Note: For files without extension you can use no_extension as a placeholder.
 #
 # Note that for custom extensions you also need to set FILE_PATTERNS otherwise
-# the files are not read by doxygen. When specifying no_extension you should add
+# the files are not read by Doxygen. When specifying no_extension you should add
 # * to the FILE_PATTERNS.
 #
 # Note see also the list of default file extension mappings.
 
 EXTENSION_MAPPING      = ino=C++
 
-# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
+# If the MARKDOWN_SUPPORT tag is enabled then Doxygen pre-processes all comments
 # according to the Markdown format, which allows for more readable
 # documentation. See https://daringfireball.net/projects/markdown/ for details.
-# The output of markdown processing is further processed by doxygen, so you can
-# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
+# The output of markdown processing is further processed by Doxygen, so you can
+# mix Doxygen, HTML, and XML commands with Markdown formatting. Disable only in
 # case of backward compatibilities issues.
 # The default value is: YES.
 
@@ -375,12 +381,23 @@ MARKDOWN_SUPPORT       = YES
 # to that level are automatically included in the table of contents, even if
 # they do not have an id attribute.
 # Note: This feature currently applies only to Markdown headings.
-# Minimum value: 0, maximum value: 99, default value: 5.
+# Minimum value: 0, maximum value: 99, default value: 6.
 # This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
 
 TOC_INCLUDE_HEADINGS   = 10
 
-# When enabled doxygen tries to link words that correspond to documented
+# The MARKDOWN_ID_STYLE tag can be used to specify the algorithm used to
+# generate identifiers for the Markdown headings. Note: Every identifier is
+# unique.
+# Possible values are: DOXYGEN use a fixed 'autotoc_md' string followed by a
+# sequence number starting at 0 and GITHUB use the lower case version of title
+# with any whitespace replaced by '-' and punctuation characters removed.
+# The default value is: DOXYGEN.
+# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
+
+MARKDOWN_ID_STYLE      = GITHUB
+
+# When enabled Doxygen tries to link words that correspond to documented
 # classes, or namespaces to their corresponding documentation. Such a link can
 # be prevented in individual cases by putting a % sign in front of the word or
 # globally by setting AUTOLINK_SUPPORT to NO.
@@ -390,10 +407,10 @@ AUTOLINK_SUPPORT       = YES
 
 # If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
 # to include (a tag file for) the STL sources as input, then you should set this
-# tag to YES in order to let doxygen match functions declarations and
+# tag to YES in order to let Doxygen match functions declarations and
 # definitions whose arguments contain STL classes (e.g. func(std::string);
-# versus func(std::string) {}). This also make the inheritance and collaboration
-# diagrams that involve STL classes more complete and accurate.
+# versus func(std::string) {}). This also makes the inheritance and
+# collaboration diagrams that involve STL classes more complete and accurate.
 # The default value is: NO.
 
 BUILTIN_STL_SUPPORT    = NO
@@ -405,16 +422,16 @@ BUILTIN_STL_SUPPORT    = NO
 CPP_CLI_SUPPORT        = NO
 
 # Set the SIP_SUPPORT tag to YES if your project consists of sip (see:
-# https://www.riverbankcomputing.com/software/sip/intro) sources only. Doxygen
-# will parse them like normal C++ but will assume all classes use public instead
-# of private inheritance when no explicit protection keyword is present.
+# https://www.riverbankcomputing.com/software) sources only. Doxygen will parse
+# them like normal C++ but will assume all classes use public instead of private
+# inheritance when no explicit protection keyword is present.
 # The default value is: NO.
 
 SIP_SUPPORT            = NO
 
 # For Microsoft's IDL there are propget and propput attributes to indicate
 # getter and setter methods for a property. Setting this option to YES will make
-# doxygen to replace the get and set methods by a property in the documentation.
+# Doxygen to replace the get and set methods by a property in the documentation.
 # This will only work if the methods are indeed getting or setting a simple
 # type. If this is not the case, or you want to show the methods anyway, you
 # should set this option to NO.
@@ -423,7 +440,7 @@ SIP_SUPPORT            = NO
 IDL_PROPERTY_SUPPORT   = YES
 
 # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
-# tag is set to YES then doxygen will reuse the documentation of the first
+# tag is set to YES then Doxygen will reuse the documentation of the first
 # member in the group (if any) for the other members of the group. By default
 # all members of a group must be documented explicitly.
 # The default value is: NO.
@@ -481,18 +498,18 @@ TYPEDEF_HIDES_STRUCT   = NO
 # The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
 # cache is used to resolve symbols given their name and scope. Since this can be
 # an expensive process and often the same symbol appears multiple times in the
-# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
-# doxygen will become slower. If the cache is too large, memory is wasted. The
+# code, Doxygen keeps a cache of pre-resolved symbols. If the cache is too small
+# Doxygen will become slower. If the cache is too large, memory is wasted. The
 # cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
 # is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
-# symbols. At the end of a run doxygen will report the cache usage and suggest
+# symbols. At the end of a run Doxygen will report the cache usage and suggest
 # the optimal cache size from a speed point of view.
 # Minimum value: 0, maximum value: 9, default value: 0.
 
 LOOKUP_CACHE_SIZE      = 0
 
-# The NUM_PROC_THREADS specifies the number of threads doxygen is allowed to use
-# during processing. When set to 0 doxygen will based this on the number of
+# The NUM_PROC_THREADS specifies the number of threads Doxygen is allowed to use
+# during processing. When set to 0 Doxygen will based this on the number of
 # cores available in the system. You can set it explicitly to a value larger
 # than 0 to get more control over the balance between CPU load and processing
 # speed. At this moment only the input processing can be done using multiple
@@ -504,11 +521,19 @@ LOOKUP_CACHE_SIZE      = 0
 
 NUM_PROC_THREADS       = 1
 
+# If the TIMESTAMP tag is set different from NO then each generated page will
+# contain the date or date and time when the page was generated. Setting this to
+# NO can help when comparing the output of multiple runs.
+# Possible values are: YES, NO, DATETIME and DATE.
+# The default value is: NO.
+
+TIMESTAMP              = YES
+
 #---------------------------------------------------------------------------
 # Build related configuration options
 #---------------------------------------------------------------------------
 
-# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in
+# If the EXTRACT_ALL tag is set to YES, Doxygen will assume all entities in
 # documentation are documented, even if no documentation was available. Private
 # class members and static file members will be hidden unless the
 # EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
@@ -574,7 +599,7 @@ EXTRACT_ANON_NSPACES   = NO
 
 RESOLVE_UNNAMED_PARAMS = YES
 
-# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
+# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
 # undocumented members inside documented classes or files. If set to NO these
 # members will be included in the various overviews, but no documentation
 # section is generated. This option has no effect if EXTRACT_ALL is enabled.
@@ -582,7 +607,7 @@ RESOLVE_UNNAMED_PARAMS = YES
 
 HIDE_UNDOC_MEMBERS     = NO
 
-# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
+# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
 # undocumented classes that are normally visible in the class hierarchy. If set
 # to NO, these classes will be included in the various overviews. This option
 # will also hide undocumented C++ concepts if enabled. This option has no effect
@@ -591,14 +616,14 @@ HIDE_UNDOC_MEMBERS     = NO
 
 HIDE_UNDOC_CLASSES     = NO
 
-# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend
+# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all friend
 # declarations. If set to NO, these declarations will be included in the
 # documentation.
 # The default value is: NO.
 
 HIDE_FRIEND_COMPOUNDS  = NO
 
-# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
+# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any
 # documentation blocks found inside the body of a function. If set to NO, these
 # blocks will be appended to the function's detailed documentation block.
 # The default value is: NO.
@@ -612,7 +637,7 @@ HIDE_IN_BODY_DOCS      = NO
 
 INTERNAL_DOCS          = NO
 
-# With the correct setting of option CASE_SENSE_NAMES doxygen will better be
+# With the correct setting of option CASE_SENSE_NAMES Doxygen will better be
 # able to match the capabilities of the underlying filesystem. In case the
 # filesystem is case sensitive (i.e. it supports files in the same directory
 # whose names only differ in casing), the option must be set to YES to properly
@@ -621,7 +646,7 @@ INTERNAL_DOCS          = NO
 # output files written for symbols that only differ in casing, such as for two
 # classes, one named CLASS and the other named Class, and to also support
 # references to files without having to specify the exact matching casing. On
-# Windows (including Cygwin) and MacOS, users should typically set this option
+# Windows (including Cygwin) and macOS, users should typically set this option
 # to NO, whereas on Linux or other Unix flavors it should typically be set to
 # YES.
 # Possible values are: SYSTEM, NO and YES.
@@ -629,14 +654,14 @@ INTERNAL_DOCS          = NO
 
 CASE_SENSE_NAMES       = NO
 
-# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
+# If the HIDE_SCOPE_NAMES tag is set to NO then Doxygen will show members with
 # their full class and namespace scopes in the documentation. If set to YES, the
 # scope will be hidden.
 # The default value is: NO.
 
 HIDE_SCOPE_NAMES       = NO
 
-# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will
+# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then Doxygen will
 # append additional text to a page's title, such as Class Reference. If set to
 # YES the compound reference will be hidden.
 # The default value is: NO.
@@ -649,7 +674,7 @@ HIDE_COMPOUND_REFERENCE= NO
 
 SHOW_HEADERFILE        = YES
 
-# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
+# If the SHOW_INCLUDE_FILES tag is set to YES then Doxygen will put a list of
 # the files that are included by a file in the documentation of that file.
 # The default value is: YES.
 
@@ -662,7 +687,7 @@ SHOW_INCLUDE_FILES     = YES
 
 SHOW_GROUPED_MEMB_INC  = YES
 
-# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
+# If the FORCE_LOCAL_INCLUDES tag is set to YES then Doxygen will list include
 # files with double quotes in the documentation rather than with sharp brackets.
 # The default value is: NO.
 
@@ -674,14 +699,14 @@ FORCE_LOCAL_INCLUDES   = NO
 
 INLINE_INFO            = YES
 
-# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
+# If the SORT_MEMBER_DOCS tag is set to YES then Doxygen will sort the
 # (detailed) documentation of file and class members alphabetically by member
 # name. If set to NO, the members will appear in declaration order.
 # The default value is: YES.
 
 SORT_MEMBER_DOCS       = NO
 
-# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
+# If the SORT_BRIEF_DOCS tag is set to YES then Doxygen will sort the brief
 # descriptions of file, namespace and class members alphabetically by member
 # name. If set to NO, the members will appear in declaration order. Note that
 # this will also influence the order of the classes in the class list.
@@ -689,7 +714,7 @@ SORT_MEMBER_DOCS       = NO
 
 SORT_BRIEF_DOCS        = NO
 
-# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
+# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then Doxygen will sort the
 # (brief and detailed) documentation of class members so that constructors and
 # destructors are listed first. If set to NO the constructors will appear in the
 # respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
@@ -701,7 +726,7 @@ SORT_BRIEF_DOCS        = NO
 
 SORT_MEMBERS_CTORS_1ST = NO
 
-# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
+# If the SORT_GROUP_NAMES tag is set to YES then Doxygen will sort the hierarchy
 # of group names into alphabetical order. If set to NO the group names will
 # appear in their defined order.
 # The default value is: NO.
@@ -718,11 +743,11 @@ SORT_GROUP_NAMES       = NO
 
 SORT_BY_SCOPE_NAME     = YES
 
-# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
+# If the STRICT_PROTO_MATCHING option is enabled and Doxygen fails to do proper
 # type resolution of all parameters of a function it will reject a match between
 # the prototype and the implementation of a member function even if there is
 # only one candidate or it is obvious which candidate to choose by doing a
-# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
+# simple string match. By disabling STRICT_PROTO_MATCHING Doxygen will still
 # accept a match between prototype and implementation in such cases.
 # The default value is: NO.
 
@@ -792,25 +817,25 @@ SHOW_FILES             = YES
 SHOW_NAMESPACES        = YES
 
 # The FILE_VERSION_FILTER tag can be used to specify a program or script that
-# doxygen should invoke to get the current version for each file (typically from
+# Doxygen should invoke to get the current version for each file (typically from
 # the version control system). Doxygen will invoke the program by executing (via
 # popen()) the command command input-file, where command is the value of the
 # FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
-# by doxygen. Whatever the program writes to standard output is used as the file
+# by Doxygen. Whatever the program writes to standard output is used as the file
 # version. For an example see the documentation.
 
 FILE_VERSION_FILTER    =
 
 # The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
-# by doxygen. The layout file controls the global structure of the generated
+# by Doxygen. The layout file controls the global structure of the generated
 # output files in an output format independent way. To create the layout file
-# that represents doxygen's defaults, run doxygen with the -l option. You can
+# that represents Doxygen's defaults, run Doxygen with the -l option. You can
 # optionally specify a file name after the option, if omitted DoxygenLayout.xml
 # will be used as the name of the layout file. See also section "Changing the
 # layout of pages" for information.
 #
-# Note that if you run doxygen from a directory containing a file called
-# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
+# Note that if you run Doxygen from a directory containing a file called
+# DoxygenLayout.xml, Doxygen will parse it automatically even if the LAYOUT_FILE
 # tag is left empty.
 
 LAYOUT_FILE            = DoxygenLayout.xml
@@ -825,19 +850,35 @@ LAYOUT_FILE            = DoxygenLayout.xml
 
 CITE_BIB_FILES         =
 
+# The EXTERNAL_TOOL_PATH tag can be used to extend the search path (PATH
+# environment variable) so that external tools such as latex and gs can be
+# found.
+# Note: Directories specified with EXTERNAL_TOOL_PATH are added in front of the
+# path already specified by the PATH variable, and are added in the order
+# specified.
+# Note: This option is particularly useful for macOS version 14 (Sonoma) and
+# higher, when running Doxygen from Doxywizard, because in this case any user-
+# defined changes to the PATH are ignored. A typical example on macOS is to set
+# EXTERNAL_TOOL_PATH = /Library/TeX/texbin /usr/local/bin
+# together with the standard path, the full search path used by doxygen when
+# launching external tools will then become
+# PATH=/Library/TeX/texbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
+
+EXTERNAL_TOOL_PATH     =
+
 #---------------------------------------------------------------------------
 # Configuration options related to warning and progress messages
 #---------------------------------------------------------------------------
 
 # The QUIET tag can be used to turn on/off the messages that are generated to
-# standard output by doxygen. If QUIET is set to YES this implies that the
+# standard output by Doxygen. If QUIET is set to YES this implies that the
 # messages are off.
 # The default value is: NO.
 
 QUIET                  = NO
 
 # The WARNINGS tag can be used to turn on/off the warning messages that are
-# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES
+# generated to standard error (stderr) by Doxygen. If WARNINGS is set to YES
 # this implies that the warnings are on.
 #
 # Tip: Turn warnings on while writing the documentation.
@@ -845,14 +886,14 @@ QUIET                  = NO
 
 WARNINGS               = YES
 
-# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate
+# If the WARN_IF_UNDOCUMENTED tag is set to YES then Doxygen will generate
 # warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
 # will automatically be disabled.
 # The default value is: YES.
 
 WARN_IF_UNDOCUMENTED   = YES
 
-# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
+# If the WARN_IF_DOC_ERROR tag is set to YES, Doxygen will generate warnings for
 # potential errors in the documentation, such as documenting some parameters in
 # a documented function twice, or documenting parameters that don't exist or
 # using markup commands wrongly.
@@ -860,8 +901,8 @@ WARN_IF_UNDOCUMENTED   = YES
 
 WARN_IF_DOC_ERROR      = YES
 
-# If WARN_IF_INCOMPLETE_DOC is set to YES, doxygen will warn about incomplete
-# function parameter documentation. If set to NO, doxygen will accept that some
+# If WARN_IF_INCOMPLETE_DOC is set to YES, Doxygen will warn about incomplete
+# function parameter documentation. If set to NO, Doxygen will accept that some
 # parameters have no documentation without warning.
 # The default value is: YES.
 
@@ -869,7 +910,7 @@ WARN_IF_INCOMPLETE_DOC = YES
 
 # This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
 # are documented, but have no documentation for their parameters or return
-# value. If set to NO, doxygen will only warn about wrong parameter
+# value. If set to NO, Doxygen will only warn about wrong parameter
 # documentation, but not about the absence of documentation. If EXTRACT_ALL is
 # set to YES then this flag will automatically be disabled. See also
 # WARN_IF_INCOMPLETE_DOC
@@ -877,24 +918,31 @@ WARN_IF_INCOMPLETE_DOC = YES
 
 WARN_NO_PARAMDOC       = YES
 
-# If WARN_IF_UNDOC_ENUM_VAL option is set to YES, doxygen will warn about
-# undocumented enumeration values. If set to NO, doxygen will accept
+# If WARN_IF_UNDOC_ENUM_VAL option is set to YES, Doxygen will warn about
+# undocumented enumeration values. If set to NO, Doxygen will accept
 # undocumented enumeration values. If EXTRACT_ALL is set to YES then this flag
 # will automatically be disabled.
 # The default value is: NO.
 
 WARN_IF_UNDOC_ENUM_VAL = YES
 
-# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when
+# If the WARN_AS_ERROR tag is set to YES then Doxygen will immediately stop when
 # a warning is encountered. If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS
-# then doxygen will continue running as if WARN_AS_ERROR tag is set to NO, but
-# at the end of the doxygen process doxygen will return with a non-zero status.
-# Possible values are: NO, YES and FAIL_ON_WARNINGS.
+# then Doxygen will continue running as if WARN_AS_ERROR tag is set to NO, but
+# at the end of the Doxygen process Doxygen will return with a non-zero status.
+# If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS_PRINT then Doxygen behaves
+# like FAIL_ON_WARNINGS but in case no WARN_LOGFILE is defined Doxygen will not
+# write the warning messages in between other messages but write them at the end
+# of a run, in case a WARN_LOGFILE is defined the warning messages will be
+# besides being in the defined file also be shown at the end of a run, unless
+# the WARN_LOGFILE is defined as - i.e. standard output (stdout) in that case
+# the behavior will remain as with the setting FAIL_ON_WARNINGS.
+# Possible values are: NO, YES, FAIL_ON_WARNINGS and FAIL_ON_WARNINGS_PRINT.
 # The default value is: NO.
 
 WARN_AS_ERROR          = FAIL_ON_WARNINGS
 
-# The WARN_FORMAT tag determines the format of the warning messages that doxygen
+# The WARN_FORMAT tag determines the format of the warning messages that Doxygen
 # can produce. The string should contain the $file, $line, and $text tags, which
 # will be replaced by the file and line number from which the warning originated
 # and the warning text. Optionally the format may contain $version, which will
@@ -907,7 +955,7 @@ WARN_FORMAT            = "$file:$line: $text"
 
 # In the $text part of the WARN_FORMAT command it is possible that a reference
 # to a more specific place is given. To make it easier to jump to this place
-# (outside of doxygen) the user can define a custom "cut" / "paste" string.
+# (outside of Doxygen) the user can define a custom "cut" / "paste" string.
 # Example:
 # WARN_LINE_FORMAT = "'vi $file +$line'"
 # See also: WARN_FORMAT
@@ -937,7 +985,7 @@ WARN_LOGFILE           = output_doxygen.log
 INPUT                  = ..
 
 # This tag can be used to specify the character encoding of the source files
-# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
+# that Doxygen parses. Internally Doxygen uses the UTF-8 encoding. Doxygen uses
 # libiconv (or the iconv built into libc) for the transcoding. See the libiconv
 # documentation (see:
 # https://www.gnu.org/software/libiconv/) for the list of possible encodings.
@@ -947,12 +995,12 @@ INPUT                  = ..
 INPUT_ENCODING         = UTF-8
 
 # This tag can be used to specify the character encoding of the source files
-# that doxygen parses The INPUT_FILE_ENCODING tag can be used to specify
+# that Doxygen parses The INPUT_FILE_ENCODING tag can be used to specify
 # character encoding on a per file pattern basis. Doxygen will compare the file
 # name with each pattern and apply the encoding instead of the default
 # INPUT_ENCODING) if there is a match. The character encodings are a list of the
-# form: pattern=encoding (like *.php=ISO-8859-1). See cfg_input_encoding
-# "INPUT_ENCODING" for further information on supported encodings.
+# form: pattern=encoding (like *.php=ISO-8859-1).
+# See also: INPUT_ENCODING for further information on supported encodings.
 
 INPUT_FILE_ENCODING    =
 
@@ -962,17 +1010,17 @@ INPUT_FILE_ENCODING    =
 #
 # Note that for custom extensions or not directly supported extensions you also
 # need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# read by doxygen.
+# read by Doxygen.
 #
 # Note the list of default checked file patterns might differ from the list of
 # default file extension mappings.
 #
-# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cpp,
-# *.c++, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h,
-# *.hh, *.hxx, *.hpp, *.h++, *.l, *.cs, *.d, *.php, *.php4, *.php5, *.phtml,
-# *.inc, *.m, *.markdown, *.md, *.mm, *.dox (to be provided as doxygen C
-# comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08, *.f18, *.f, *.for, *.vhd,
-# *.vhdl, *.ucf, *.qsf and *.ice.
+# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cxxm,
+# *.cpp, *.cppm, *.ccm, *.c++, *.c++m, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl,
+# *.idl, *.ddl, *.odl, *.h, *.hh, *.hxx, *.hpp, *.h++, *.ixx, *.l, *.cs, *.d,
+# *.php, *.php4, *.php5, *.phtml, *.inc, *.m, *.markdown, *.md, *.mm, *.dox (to
+# be provided as Doxygen C comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
+# *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
 
 FILE_PATTERNS          = *.c \
                          *.cc \
@@ -1004,7 +1052,7 @@ RECURSIVE              = YES
 # excluded from the INPUT source files. This way you can easily exclude a
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 #
-# Note that relative paths are relative to the directory from which doxygen is
+# Note that relative paths are relative to the directory from which Doxygen is
 # run.
 
 EXCLUDE                = ../src/ReadMe.md \
@@ -1034,9 +1082,6 @@ EXCLUDE_PATTERNS       =
 # output. The symbol name can be a fully qualified name, a word, or if the
 # wildcard * is used, a substring. Examples: ANamespace, AClass,
 # ANamespace::AClass, ANamespace::*Test
-#
-# Note that the wildcards are matched against the file with absolute path, so to
-# exclude all test directories use the pattern */test/*
 
 EXCLUDE_SYMBOLS        =
 
@@ -1073,7 +1118,7 @@ EXAMPLE_RECURSIVE      = YES
 
 IMAGE_PATH             =
 
-# The INPUT_FILTER tag can be used to specify a program that doxygen should
+# The INPUT_FILTER tag can be used to specify a program that Doxygen should
 # invoke to filter for each input file. Doxygen will invoke the filter program
 # by executing (via popen()) the command:
 #
@@ -1088,14 +1133,14 @@ IMAGE_PATH             =
 # code is scanned, but not when the output code is generated. If lines are added
 # or removed, the anchors will not be placed correctly.
 #
-# Note that doxygen will use the data processed and written to standard output
+# Note that Doxygen will use the data processed and written to standard output
 # for further processing, therefore nothing else, like debug statements or used
 # commands (so in case of a Windows batch file always use @echo OFF), should be
 # written to standard output.
 #
 # Note that for custom extensions or not directly supported extensions you also
 # need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# properly processed by doxygen.
+# properly processed by Doxygen.
 
 INPUT_FILTER           =
 
@@ -1108,7 +1153,7 @@ INPUT_FILTER           =
 #
 # Note that for custom extensions or not directly supported extensions you also
 # need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# properly processed by doxygen.
+# properly processed by Doxygen.
 
 FILTER_PATTERNS        = "*.md=python markdown_prefilter.py"
 
@@ -1130,7 +1175,7 @@ FILTER_SOURCE_PATTERNS =
 # If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that
 # is part of the input, its contents will be placed on the main page
 # (index.html). This can be useful if you have a project on for instance GitHub
-# and want to reuse the introduction page also for the doxygen output.
+# and want to reuse the introduction page also for the Doxygen output.
 
 USE_MDFILE_AS_MAINPAGE = README.md
 
@@ -1157,12 +1202,13 @@ FORTRAN_COMMENT_AFTER  = 72
 SOURCE_BROWSER         = YES
 
 # Setting the INLINE_SOURCES tag to YES will include the body of functions,
-# classes and enums directly into the documentation.
+# multi-line macros, enums or list initialized variables directly into the
+# documentation.
 # The default value is: NO.
 
 INLINE_SOURCES         = NO
 
-# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any
+# Setting the STRIP_CODE_COMMENTS tag to YES will instruct Doxygen to hide any
 # special comment blocks from generated source code fragments. Normal C, C++ and
 # Fortran comments will always remain visible.
 # The default value is: YES.
@@ -1200,7 +1246,7 @@ REFERENCES_LINK_SOURCE = YES
 SOURCE_TOOLTIPS        = YES
 
 # If the USE_HTAGS tag is set to YES then the references to source code will
-# point to the HTML generated by the htags(1) tool instead of doxygen built-in
+# point to the HTML generated by the htags(1) tool instead of Doxygen built-in
 # source browser. The htags tool is part of GNU's global source tagging system
 # (see https://www.gnu.org/software/global/global.html). You will need version
 # 4.8.6 or higher.
@@ -1214,14 +1260,14 @@ SOURCE_TOOLTIPS        = YES
 # Doxygen will invoke htags (and that will in turn invoke gtags), so these
 # tools must be available from the command line (i.e. in the search path).
 #
-# The result: instead of the source browser generated by doxygen, the links to
+# The result: instead of the source browser generated by Doxygen, the links to
 # source code will now point to the output of htags.
 # The default value is: NO.
 # This tag requires that the tag SOURCE_BROWSER is set to YES.
 
 USE_HTAGS              = NO
 
-# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a
+# If the VERBATIM_HEADERS tag is set the YES then Doxygen will generate a
 # verbatim copy of the header file for each class for which an include is
 # specified. Set to NO to disable this.
 # See also: Section \class.
@@ -1229,19 +1275,19 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = YES
 
-# If the CLANG_ASSISTED_PARSING tag is set to YES then doxygen will use the
+# If the CLANG_ASSISTED_PARSING tag is set to YES then Doxygen will use the
 # clang parser (see:
 # http://clang.llvm.org/) for more accurate parsing at the cost of reduced
 # performance. This can be particularly helpful with template rich C++ code for
-# which doxygen's built-in parser lacks the necessary type information.
-# Note: The availability of this option depends on whether or not doxygen was
+# which Doxygen's built-in parser lacks the necessary type information.
+# Note: The availability of this option depends on whether or not Doxygen was
 # generated with the -Duse_libclang=ON option for CMake.
 # The default value is: NO.
 
 CLANG_ASSISTED_PARSING = NO
 
 # If the CLANG_ASSISTED_PARSING tag is set to YES and the CLANG_ADD_INC_PATHS
-# tag is set to YES then doxygen will add the directory of each input to the
+# tag is set to YES then Doxygen will add the directory of each input to the
 # include path.
 # The default value is: YES.
 # This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
@@ -1250,7 +1296,7 @@ CLANG_ADD_INC_PATHS    = YES
 
 # If clang assisted parsing is enabled you can provide the compiler with command
 # line options that you would normally use when invoking the compiler. Note that
-# the include paths will already be set by doxygen for the files and directories
+# the include paths will already be set by Doxygen for the files and directories
 # specified with INPUT and INCLUDE_PATH.
 # This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
 
@@ -1264,7 +1310,7 @@ CLANG_OPTIONS          =
 # specifying the -p option to a clang tool, such as clang-check. These options
 # will then be passed to the parser. Any options specified with CLANG_OPTIONS
 # will be added as well.
-# Note: The availability of this option depends on whether or not doxygen was
+# Note: The availability of this option depends on whether or not Doxygen was
 # generated with the -Duse_libclang=ON option for CMake.
 
 CLANG_DATABASE_PATH    =
@@ -1293,7 +1339,7 @@ IGNORE_PREFIX          =
 # Configuration options related to the HTML output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_HTML tag is set to YES, doxygen will generate HTML output
+# If the GENERATE_HTML tag is set to YES, Doxygen will generate HTML output
 # The default value is: YES.
 
 GENERATE_HTML          = NO
@@ -1314,40 +1360,40 @@ HTML_OUTPUT            = html
 HTML_FILE_EXTENSION    = .html
 
 # The HTML_HEADER tag can be used to specify a user-defined HTML header file for
-# each generated HTML page. If the tag is left blank doxygen will generate a
+# each generated HTML page. If the tag is left blank Doxygen will generate a
 # standard header.
 #
 # To get valid HTML the header file that includes any scripts and style sheets
-# that doxygen needs, which is dependent on the configuration options used (e.g.
+# that Doxygen needs, which is dependent on the configuration options used (e.g.
 # the setting GENERATE_TREEVIEW). It is highly recommended to start with a
 # default header using
 # doxygen -w html new_header.html new_footer.html new_stylesheet.css
 # YourConfigFile
 # and then modify the file new_header.html. See also section "Doxygen usage"
-# for information on how to generate the default header that doxygen normally
+# for information on how to generate the default header that Doxygen normally
 # uses.
 # Note: The header is subject to change so you typically have to regenerate the
-# default header when upgrading to a newer version of doxygen. For a description
+# default header when upgrading to a newer version of Doxygen. For a description
 # of the possible markers and block names see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
 HTML_HEADER            =
 
 # The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
-# generated HTML page. If the tag is left blank doxygen will generate a standard
+# generated HTML page. If the tag is left blank Doxygen will generate a standard
 # footer. See HTML_HEADER for more information on how to generate a default
 # footer and what special commands can be used inside the footer. See also
 # section "Doxygen usage" for information on how to generate the default footer
-# that doxygen normally uses.
+# that Doxygen normally uses.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
 HTML_FOOTER            =
 
 # The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
 # sheet that is used by each HTML page. It can be used to fine-tune the look of
-# the HTML output. If left blank doxygen will generate a default style sheet.
+# the HTML output. If left blank Doxygen will generate a default style sheet.
 # See also section "Doxygen usage" for information on how to generate the style
-# sheet that doxygen normally uses.
+# sheet that Doxygen normally uses.
 # Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as
 # it is more robust and this tag (HTML_STYLESHEET) will in the future become
 # obsolete.
@@ -1357,7 +1403,7 @@ HTML_STYLESHEET        =
 
 # The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
 # cascading style sheets that are included after the standard style sheets
-# created by doxygen. Using this option one can overrule certain style aspects.
+# created by Doxygen. Using this option one can overrule certain style aspects.
 # This is preferred over using HTML_STYLESHEET since it does not replace the
 # standard style sheet and is therefore more robust against future updates.
 # Doxygen will copy the style sheet files to the output directory.
@@ -1385,11 +1431,11 @@ HTML_EXTRA_FILES       =
 
 # The HTML_COLORSTYLE tag can be used to specify if the generated HTML output
 # should be rendered with a dark or light theme.
-# Possible values are: LIGHT always generate light mode output, DARK always
-# generate dark mode output, AUTO_LIGHT automatically set the mode according to
-# the user preference, use light mode if no preference is set (the default),
-# AUTO_DARK automatically set the mode according to the user preference, use
-# dark mode if no preference is set and TOGGLE allow to user to switch between
+# Possible values are: LIGHT always generates light mode output, DARK always
+# generates dark mode output, AUTO_LIGHT automatically sets the mode according
+# to the user preference, uses light mode if no preference is set (the default),
+# AUTO_DARK automatically sets the mode according to the user preference, uses
+# dark mode if no preference is set and TOGGLE allows a user to switch between
 # light and dark mode via a button.
 # The default value is: AUTO_LIGHT.
 # This tag requires that the tag GENERATE_HTML is set to YES.
@@ -1426,15 +1472,6 @@ HTML_COLORSTYLE_SAT    = 83
 
 HTML_COLORSTYLE_GAMMA  = 88
 
-# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
-# page will contain the date and time when the page was generated. Setting this
-# to YES can help to show when doxygen was last run and thus if the
-# documentation is up to date.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_TIMESTAMP         = YES
-
 # If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
 # documentation will contain a main index with vertical navigation menus that
 # are dynamically created via JavaScript. If disabled, the navigation index will
@@ -1454,6 +1491,33 @@ HTML_DYNAMIC_MENUS     = YES
 
 HTML_DYNAMIC_SECTIONS  = YES
 
+# If the HTML_CODE_FOLDING tag is set to YES then classes and functions can be
+# dynamically folded and expanded in the generated HTML source code.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_CODE_FOLDING      = YES
+
+# If the HTML_COPY_CLIPBOARD tag is set to YES then Doxygen will show an icon in
+# the top right corner of code and text fragments that allows the user to copy
+# its content to the clipboard. Note this only works if supported by the browser
+# and the web page is served via a secure context (see:
+# https://www.w3.org/TR/secure-contexts/), i.e. using the https: or file:
+# protocol.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COPY_CLIPBOARD    = YES
+
+# Doxygen stores a couple of settings persistently in the browser (via e.g.
+# cookies). By default these settings apply to all HTML pages generated by
+# Doxygen across all projects. The HTML_PROJECT_COOKIE tag can be used to store
+# the settings under a project specific key, such that the user preferences will
+# be stored separately.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_PROJECT_COOKIE    =
+
 # With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
 # shown in the various tree structured indices initially; the user can expand
 # and collapse entries dynamically later on. Doxygen will expand the tree to
@@ -1471,7 +1535,7 @@ HTML_INDEX_NUM_ENTRIES = 500
 # generated that can be used as input for Apple's Xcode 3 integrated development
 # environment (see:
 # https://developer.apple.com/xcode/), introduced with OSX 10.5 (Leopard). To
-# create a documentation set, doxygen will generate a Makefile in the HTML
+# create a documentation set, Doxygen will generate a Makefile in the HTML
 # output directory. Running make will produce the docset in that directory and
 # running make install will install the docset in
 # ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
@@ -1519,7 +1583,7 @@ DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
 
 DOCSET_PUBLISHER_NAME  = Publisher
 
-# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
+# If the GENERATE_HTMLHELP tag is set to YES then Doxygen generates three
 # additional HTML index files: index.hhp, index.hhc, and index.hhk. The
 # index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
 # on Windows. In the beginning of 2021 Microsoft took the original page, with
@@ -1530,7 +1594,7 @@ DOCSET_PUBLISHER_NAME  = Publisher
 # ad/0/A/9/0A939EF6-E31C-430F-A3DF-DFAE7960D564/htmlhelp.exe).
 #
 # The HTML Help Workshop contains a compiler that can convert all HTML output
-# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
+# generated by Doxygen into a single compiled HTML file (.chm). Compiled HTML
 # files are now used as the Windows 98 help format, and will replace the old
 # Windows help format (.hlp) on all Windows platforms in the future. Compressed
 # HTML files also contain an index, a table of contents, and you can search for
@@ -1550,7 +1614,7 @@ CHM_FILE               =
 
 # The HHC_LOCATION tag can be used to specify the location (absolute path
 # including file name) of the HTML help compiler (hhc.exe). If non-empty,
-# doxygen will try to run the HTML help compiler on the generated index.hhp.
+# Doxygen will try to run the HTML help compiler on the generated index.hhp.
 # The file has to be specified with full path.
 # This tag requires that the tag GENERATE_HTMLHELP is set to YES.
 
@@ -1584,6 +1648,16 @@ BINARY_TOC             = NO
 
 TOC_EXPAND             = NO
 
+# The SITEMAP_URL tag is used to specify the full URL of the place where the
+# generated documentation will be placed on the server by the user during the
+# deployment of the documentation. The generated sitemap is called sitemap.xml
+# and placed on the directory specified by HTML_OUTPUT. In case no SITEMAP_URL
+# is specified no sitemap is generated. For information about the sitemap
+# protocol see https://www.sitemaps.org
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+SITEMAP_URL            =
+
 # If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
 # QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
 # can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
@@ -1642,7 +1716,7 @@ QHP_CUST_FILTER_ATTRS  =
 QHP_SECT_FILTER_ATTRS  =
 
 # The QHG_LOCATION tag can be used to specify the location (absolute path
-# including file name) of Qt's qhelpgenerator. If non-empty doxygen will try to
+# including file name) of Qt's qhelpgenerator. If non-empty Doxygen will try to
 # run qhelpgenerator on the generated .qhp file.
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
@@ -1687,7 +1761,7 @@ DISABLE_INDEX          = NO
 # (i.e. any modern browser). Windows users are probably better off using the
 # HTML help feature. Via custom style sheets (see HTML_EXTRA_STYLESHEET) one can
 # further fine tune the look of the index (see "Fine-tuning the output"). As an
-# example, the default style sheet generated by doxygen has an example that
+# example, the default style sheet generated by Doxygen has an example that
 # shows how to put an image at the root of the tree instead of the PROJECT_NAME.
 # Since the tree basically has the same information as the tab index, you could
 # consider setting DISABLE_INDEX to YES when enabling this option.
@@ -1709,7 +1783,7 @@ GENERATE_TREEVIEW      = YES
 FULL_SIDEBAR           = NO
 
 # The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
-# doxygen will group on one line in the generated HTML documentation.
+# Doxygen will group on one line in the generated HTML documentation.
 #
 # Note that a value of 0 will completely suppress the enum values from appearing
 # in the overview section.
@@ -1718,6 +1792,12 @@ FULL_SIDEBAR           = NO
 
 ENUM_VALUES_PER_LINE   = 4
 
+# When the SHOW_ENUM_VALUES tag is set doxygen will show the specified
+# enumeration values besides the enumeration mnemonics.
+# The default value is: NO.
+
+SHOW_ENUM_VALUES       = YES
+
 # If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used
 # to set the initial width (in pixels) of the frame in which the tree is shown.
 # Minimum value: 0, maximum value: 1500, default value: 250.
@@ -1725,21 +1805,21 @@ ENUM_VALUES_PER_LINE   = 4
 
 TREEVIEW_WIDTH         = 200
 
-# If the EXT_LINKS_IN_WINDOW option is set to YES, doxygen will open links to
+# If the EXT_LINKS_IN_WINDOW option is set to YES, Doxygen will open links to
 # external symbols imported via tag files in a separate window.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
 EXT_LINKS_IN_WINDOW    = NO
 
-# If the OBFUSCATE_EMAILS tag is set to YES, doxygen will obfuscate email
+# If the OBFUSCATE_EMAILS tag is set to YES, Doxygen will obfuscate email
 # addresses.
 # The default value is: YES.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
 OBFUSCATE_EMAILS       = YES
 
-# If the HTML_FORMULA_FORMAT option is set to svg, doxygen will use the pdf2svg
+# If the HTML_FORMULA_FORMAT option is set to svg, Doxygen will use the pdf2svg
 # tool (see https://github.com/dawbarton/pdf2svg) or inkscape (see
 # https://inkscape.org) to generate formulas as SVG images instead of PNGs for
 # the HTML output. These images will generally look nicer at scaled resolutions.
@@ -1752,7 +1832,7 @@ HTML_FORMULA_FORMAT    = png
 
 # Use this tag to change the font size of LaTeX formulas included as images in
 # the HTML documentation. When you change the font size after a successful
-# doxygen run you need to manually remove any form_*.png images from the HTML
+# Doxygen run you need to manually remove any form_*.png images from the HTML
 # output directory to force them to be regenerated.
 # Minimum value: 8, maximum value: 50, default value: 10.
 # This tag requires that the tag GENERATE_HTML is set to YES.
@@ -1796,7 +1876,7 @@ MATHJAX_VERSION        = MathJax_2
 # Possible values are: HTML-CSS (which is slower, but has the best
 # compatibility. This is the name for Mathjax version 2, for MathJax version 3
 # this will be translated into chtml), NativeMML (i.e. MathML. Only supported
-# for NathJax 2. For MathJax version 3 chtml will be used instead.), chtml (This
+# for MathJax 2. For MathJax version 3 chtml will be used instead.), chtml (This
 # is the name for Mathjax version 3, for MathJax version 2 this will be
 # translated into HTML-CSS) and SVG.
 # The default value is: HTML-CSS.
@@ -1830,7 +1910,7 @@ MATHJAX_RELPATH        = https://cdn.jsdelivr.net/npm/mathjax@2
 
 MATHJAX_EXTENSIONS     =
 
-# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces
+# The MATHJAX_CODEFILE tag can be used to specify a file with JavaScript pieces
 # of code that will be used on startup of the MathJax code. See the MathJax site
 # (see:
 # http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. For an
@@ -1839,12 +1919,12 @@ MATHJAX_EXTENSIONS     =
 
 MATHJAX_CODEFILE       =
 
-# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
-# the HTML output. The underlying search engine uses javascript and DHTML and
+# When the SEARCHENGINE tag is enabled Doxygen will generate a search box for
+# the HTML output. The underlying search engine uses JavaScript and DHTML and
 # should work on any modern browser. Note that when using HTML help
 # (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
 # there is already a search function so this one should typically be disabled.
-# For large projects the javascript based search engine can be slow, then
+# For large projects the JavaScript based search engine can be slow, then
 # enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to
 # search using the keyboard; to jump to the search box use <access key> + S
 # (what the <access key> is depends on the OS and browser, but it is typically
@@ -1863,7 +1943,7 @@ SEARCHENGINE           = YES
 # When the SERVER_BASED_SEARCH tag is enabled the search engine will be
 # implemented using a web server instead of a web client using JavaScript. There
 # are two flavors of web server based searching depending on the EXTERNAL_SEARCH
-# setting. When disabled, doxygen will generate a PHP script for searching and
+# setting. When disabled, Doxygen will generate a PHP script for searching and
 # an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
 # and searching needs to be provided by external tools. See the section
 # "External Indexing and Searching" for details.
@@ -1872,7 +1952,7 @@ SEARCHENGINE           = YES
 
 SERVER_BASED_SEARCH    = NO
 
-# When EXTERNAL_SEARCH tag is enabled doxygen will no longer generate the PHP
+# When EXTERNAL_SEARCH tag is enabled Doxygen will no longer generate the PHP
 # script for searching. Instead the search results are written to an XML file
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain the
@@ -1917,7 +1997,7 @@ SEARCHDATA_FILE        = searchdata.xml
 
 EXTERNAL_SEARCH_ID     =
 
-# The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through doxygen
+# The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through Doxygen
 # projects other than the one defined by this configuration file, but that are
 # all added to the same external search index. Each project needs to have a
 # unique id set via EXTERNAL_SEARCH_ID. The search mapping then maps the id of
@@ -1931,7 +2011,7 @@ EXTRA_SEARCH_MAPPINGS  =
 # Configuration options related to the LaTeX output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_LATEX tag is set to YES, doxygen will generate LaTeX output.
+# If the GENERATE_LATEX tag is set to YES, Doxygen will generate LaTeX output.
 # The default value is: YES.
 
 GENERATE_LATEX         = NO
@@ -1976,7 +2056,7 @@ MAKEINDEX_CMD_NAME     = makeindex
 
 LATEX_MAKEINDEX_CMD    = makeindex
 
-# If the COMPACT_LATEX tag is set to YES, doxygen generates more compact LaTeX
+# If the COMPACT_LATEX tag is set to YES, Doxygen generates more compact LaTeX
 # documents. This may be useful for small projects and may help to save some
 # trees in general.
 # The default value is: NO.
@@ -2007,15 +2087,15 @@ EXTRA_PACKAGES         =
 
 # The LATEX_HEADER tag can be used to specify a user-defined LaTeX header for
 # the generated LaTeX document. The header should contain everything until the
-# first chapter. If it is left blank doxygen will generate a standard header. It
+# first chapter. If it is left blank Doxygen will generate a standard header. It
 # is highly recommended to start with a default header using
 # doxygen -w latex new_header.tex new_footer.tex new_stylesheet.sty
 # and then modify the file new_header.tex. See also section "Doxygen usage" for
-# information on how to generate the default header that doxygen normally uses.
+# information on how to generate the default header that Doxygen normally uses.
 #
 # Note: Only use a user-defined header if you know what you are doing!
 # Note: The header is subject to change so you typically have to regenerate the
-# default header when upgrading to a newer version of doxygen. The following
+# default header when upgrading to a newer version of Doxygen. The following
 # commands have a special meaning inside the header (and footer): For a
 # description of the possible markers and block names see the documentation.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -2024,10 +2104,10 @@ LATEX_HEADER           =
 
 # The LATEX_FOOTER tag can be used to specify a user-defined LaTeX footer for
 # the generated LaTeX document. The footer should contain everything after the
-# last chapter. If it is left blank doxygen will generate a standard footer. See
+# last chapter. If it is left blank Doxygen will generate a standard footer. See
 # LATEX_HEADER for more information on how to generate a default footer and what
 # special commands can be used inside the footer. See also section "Doxygen
-# usage" for information on how to generate the default footer that doxygen
+# usage" for information on how to generate the default footer that Doxygen
 # normally uses. Note: Only use a user-defined footer if you know what you are
 # doing!
 # This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -2036,7 +2116,7 @@ LATEX_FOOTER           =
 
 # The LATEX_EXTRA_STYLESHEET tag can be used to specify additional user-defined
 # LaTeX style sheets that are included after the standard style sheets created
-# by doxygen. Using this option one can overrule certain style aspects. Doxygen
+# by Doxygen. Using this option one can overrule certain style aspects. Doxygen
 # will copy the style sheet files to the output directory.
 # Note: The order of the extra style sheet files is of importance (e.g. the last
 # style sheet in the list overrules the setting of the previous ones in the
@@ -2062,7 +2142,7 @@ LATEX_EXTRA_FILES      =
 
 PDF_HYPERLINKS         = YES
 
-# If the USE_PDFLATEX tag is set to YES, doxygen will use the engine as
+# If the USE_PDFLATEX tag is set to YES, Doxygen will use the engine as
 # specified with LATEX_CMD_NAME to generate the PDF file directly from the LaTeX
 # files. Set this option to YES, to get a higher quality PDF documentation.
 #
@@ -2072,15 +2152,22 @@ PDF_HYPERLINKS         = YES
 
 USE_PDFLATEX           = YES
 
-# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \batchmode
-# command to the generated LaTeX files. This will instruct LaTeX to keep running
-# if errors occur, instead of asking the user for help.
+# The LATEX_BATCHMODE tag signals the behavior of LaTeX in case of an error.
+# Possible values are: NO same as ERROR_STOP, YES same as BATCH, BATCH In batch
+# mode nothing is printed on the terminal, errors are scrolled as if <return> is
+# hit at every error; missing files that TeX tries to input or request from
+# keyboard input (\read on a not open input stream) cause the job to abort,
+# NON_STOP In nonstop mode the diagnostic message will appear on the terminal,
+# but there is no possibility of user interaction just like in batch mode,
+# SCROLL In scroll mode, TeX will stop only for missing files to input or if
+# keyboard input is necessary and ERROR_STOP In errorstop mode, TeX will stop at
+# each error, asking for user intervention.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
 LATEX_BATCHMODE        = NO
 
-# If the LATEX_HIDE_INDICES tag is set to YES then doxygen will not include the
+# If the LATEX_HIDE_INDICES tag is set to YES then Doxygen will not include the
 # index chapters (such as File Index, Compound Index, etc.) in the output.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
@@ -2095,14 +2182,6 @@ LATEX_HIDE_INDICES     = NO
 
 LATEX_BIB_STYLE        = plain
 
-# If the LATEX_TIMESTAMP tag is set to YES then the footer of each generated
-# page will contain the date and time when the page was generated. Setting this
-# to NO can help when comparing the output of multiple runs.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_LATEX is set to YES.
-
-LATEX_TIMESTAMP        = NO
-
 # The LATEX_EMOJI_DIRECTORY tag is used to specify the (relative or absolute)
 # path from which the emoji images will be read. If a relative path is entered,
 # it will be relative to the LATEX_OUTPUT directory. If left blank the
@@ -2115,7 +2194,7 @@ LATEX_EMOJI_DIRECTORY  =
 # Configuration options related to the RTF output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_RTF tag is set to YES, doxygen will generate RTF output. The
+# If the GENERATE_RTF tag is set to YES, Doxygen will generate RTF output. The
 # RTF output is optimized for Word 97 and may not look too pretty with other RTF
 # readers/editors.
 # The default value is: NO.
@@ -2130,7 +2209,7 @@ GENERATE_RTF           = NO
 
 RTF_OUTPUT             = rtf
 
-# If the COMPACT_RTF tag is set to YES, doxygen generates more compact RTF
+# If the COMPACT_RTF tag is set to YES, Doxygen generates more compact RTF
 # documents. This may be useful for small projects and may help to save some
 # trees in general.
 # The default value is: NO.
@@ -2150,28 +2229,36 @@ COMPACT_RTF            = NO
 
 RTF_HYPERLINKS         = NO
 
-# Load stylesheet definitions from file. Syntax is similar to doxygen's
+# Load stylesheet definitions from file. Syntax is similar to Doxygen's
 # configuration file, i.e. a series of assignments. You only have to provide
 # replacements, missing definitions are set to their default value.
 #
 # See also section "Doxygen usage" for information on how to generate the
-# default style sheet that doxygen normally uses.
+# default style sheet that Doxygen normally uses.
 # This tag requires that the tag GENERATE_RTF is set to YES.
 
 RTF_STYLESHEET_FILE    =
 
 # Set optional variables used in the generation of an RTF document. Syntax is
-# similar to doxygen's configuration file. A template extensions file can be
+# similar to Doxygen's configuration file. A template extensions file can be
 # generated using doxygen -e rtf extensionFile.
 # This tag requires that the tag GENERATE_RTF is set to YES.
 
 RTF_EXTENSIONS_FILE    =
 
+# The RTF_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the RTF_OUTPUT output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+# This tag requires that the tag GENERATE_RTF is set to YES.
+
+RTF_EXTRA_FILES        =
+
 #---------------------------------------------------------------------------
 # Configuration options related to the man page output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_MAN tag is set to YES, doxygen will generate man pages for
+# If the GENERATE_MAN tag is set to YES, Doxygen will generate man pages for
 # classes and files.
 # The default value is: NO.
 
@@ -2202,7 +2289,7 @@ MAN_EXTENSION          = .3
 
 MAN_SUBDIR             =
 
-# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
+# If the MAN_LINKS tag is set to YES and Doxygen generates man output, then it
 # will generate one additional man file for each entity documented in the real
 # man page(s). These additional files only source the real man page, but without
 # them the man command would be unable to find the correct page.
@@ -2215,7 +2302,7 @@ MAN_LINKS              = NO
 # Configuration options related to the XML output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_XML tag is set to YES, doxygen will generate an XML file that
+# If the GENERATE_XML tag is set to YES, Doxygen will generate an XML file that
 # captures the structure of the code including all documentation.
 # The default value is: NO.
 
@@ -2229,7 +2316,7 @@ GENERATE_XML           = YES
 
 XML_OUTPUT             = xml
 
-# If the XML_PROGRAMLISTING tag is set to YES, doxygen will dump the program
+# If the XML_PROGRAMLISTING tag is set to YES, Doxygen will dump the program
 # listings (including syntax highlighting and cross-referencing information) to
 # the XML output. Note that enabling this will significantly increase the size
 # of the XML output.
@@ -2238,7 +2325,7 @@ XML_OUTPUT             = xml
 
 XML_PROGRAMLISTING     = NO
 
-# If the XML_NS_MEMB_FILE_SCOPE tag is set to YES, doxygen will include
+# If the XML_NS_MEMB_FILE_SCOPE tag is set to YES, Doxygen will include
 # namespace members in file scope as well, matching the HTML output.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_XML is set to YES.
@@ -2249,7 +2336,7 @@ XML_NS_MEMB_FILE_SCOPE = YES
 # Configuration options related to the DOCBOOK output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_DOCBOOK tag is set to YES, doxygen will generate Docbook files
+# If the GENERATE_DOCBOOK tag is set to YES, Doxygen will generate Docbook files
 # that can be used to generate PDF.
 # The default value is: NO.
 
@@ -2267,19 +2354,45 @@ DOCBOOK_OUTPUT         = docbook
 # Configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_AUTOGEN_DEF tag is set to YES, doxygen will generate an
-# AutoGen Definitions (see http://autogen.sourceforge.net/) file that captures
+# If the GENERATE_AUTOGEN_DEF tag is set to YES, Doxygen will generate an
+# AutoGen Definitions (see https://autogen.sourceforge.net/) file that captures
 # the structure of the code including all documentation. Note that this feature
 # is still experimental and incomplete at the moment.
 # The default value is: NO.
 
 GENERATE_AUTOGEN_DEF   = NO
 
+#---------------------------------------------------------------------------
+# Configuration options related to Sqlite3 output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_SQLITE3 tag is set to YES Doxygen will generate a Sqlite3
+# database with symbols found by Doxygen stored in tables.
+# The default value is: NO.
+
+GENERATE_SQLITE3       = NO
+
+# The SQLITE3_OUTPUT tag is used to specify where the Sqlite3 database will be
+# put. If a relative path is entered the value of OUTPUT_DIRECTORY will be put
+# in front of it.
+# The default directory is: sqlite3.
+# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
+
+SQLITE3_OUTPUT         = sqlite3
+
+# The SQLITE3_RECREATE_DB tag is set to YES, the existing doxygen_sqlite3.db
+# database file will be recreated with each Doxygen run. If set to NO, Doxygen
+# will warn if a database file is already found and not modify it.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
+
+SQLITE3_RECREATE_DB    = YES
+
 #---------------------------------------------------------------------------
 # Configuration options related to the Perl module output
 #---------------------------------------------------------------------------
 
-# If the GENERATE_PERLMOD tag is set to YES, doxygen will generate a Perl module
+# If the GENERATE_PERLMOD tag is set to YES, Doxygen will generate a Perl module
 # file that captures the structure of the code including all documentation.
 #
 # Note that this feature is still experimental and incomplete at the moment.
@@ -2287,7 +2400,7 @@ GENERATE_AUTOGEN_DEF   = NO
 
 GENERATE_PERLMOD       = NO
 
-# If the PERLMOD_LATEX tag is set to YES, doxygen will generate the necessary
+# If the PERLMOD_LATEX tag is set to YES, Doxygen will generate the necessary
 # Makefile rules, Perl scripts and LaTeX code to be able to generate PDF and DVI
 # output from the Perl module output.
 # The default value is: NO.
@@ -2317,13 +2430,13 @@ PERLMOD_MAKEVAR_PREFIX =
 # Configuration options related to the preprocessor
 #---------------------------------------------------------------------------
 
-# If the ENABLE_PREPROCESSING tag is set to YES, doxygen will evaluate all
+# If the ENABLE_PREPROCESSING tag is set to YES, Doxygen will evaluate all
 # C-preprocessor directives found in the sources and include files.
 # The default value is: YES.
 
 ENABLE_PREPROCESSING   = YES
 
-# If the MACRO_EXPANSION tag is set to YES, doxygen will expand all macro names
+# If the MACRO_EXPANSION tag is set to YES, Doxygen will expand all macro names
 # in the source code. If set to NO, only conditional compilation will be
 # performed. Macro expansion can be done in a controlled way by setting
 # EXPAND_ONLY_PREDEF to YES.
@@ -2434,7 +2547,7 @@ EXPAND_AS_DEFINED      = MS_MODEM_EXTRA_SETUP \
                          MS_PRINT_DEBUG_TIMER \
                          MAKE_VARIABLE_CLASS
 
-# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
+# If the SKIP_FUNCTION_MACROS tag is set to YES then Doxygen's preprocessor will
 # remove all references to function-like macros that are alone on a line, have
 # an all uppercase name, and do not end with a semicolon. Such function macros
 # are typically used for boiler-plate code, and will confuse the parser if not
@@ -2458,26 +2571,26 @@ SKIP_FUNCTION_MACROS   = YES
 # section "Linking to external documentation" for more information about the use
 # of tag files.
 # Note: Each tag file must have a unique name (where the name does NOT include
-# the path). If a tag file is not located in the directory in which doxygen is
+# the path). If a tag file is not located in the directory in which Doxygen is
 # run, you must also specify the path to the tagfile here.
 
 TAGFILES               =
 
-# When a file name is specified after GENERATE_TAGFILE, doxygen will create a
+# When a file name is specified after GENERATE_TAGFILE, Doxygen will create a
 # tag file that is based on the input files it reads. See section "Linking to
 # external documentation" for more information about the usage of tag files.
 
 GENERATE_TAGFILE       =
 
-# If the ALLEXTERNALS tag is set to YES, all external class will be listed in
-# the class index. If set to NO, only the inherited external classes will be
-# listed.
+# If the ALLEXTERNALS tag is set to YES, all external classes and namespaces
+# will be listed in the class and namespace index. If set to NO, only the
+# inherited external classes will be listed.
 # The default value is: NO.
 
 ALLEXTERNALS           = NO
 
 # If the EXTERNAL_GROUPS tag is set to YES, all external groups will be listed
-# in the modules index. If set to NO, only the current project's groups will be
+# in the topic index. If set to NO, only the current project's groups will be
 # listed.
 # The default value is: YES.
 
@@ -2491,33 +2604,26 @@ EXTERNAL_GROUPS        = YES
 EXTERNAL_PAGES         = YES
 
 #---------------------------------------------------------------------------
-# Configuration options related to the dot tool
+# Configuration options related to diagram generator tools
 #---------------------------------------------------------------------------
 
-# You can include diagrams made with dia in doxygen documentation. Doxygen will
-# then run dia to produce the diagram and insert it in the documentation. The
-# DIA_PATH tag allows you to specify the directory where the dia binary resides.
-# If left empty dia is assumed to be found in the default search path.
-
-DIA_PATH               =
-
 # If set to YES the inheritance and collaboration graphs will hide inheritance
 # and usage relations if the target is undocumented or is not a class.
 # The default value is: YES.
 
 HIDE_UNDOC_RELATIONS   = NO
 
-# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
+# If you set the HAVE_DOT tag to YES then Doxygen will assume the dot tool is
 # available from the path. This tool is part of Graphviz (see:
-# http://www.graphviz.org/), a graph visualization toolkit from AT&T and Lucent
+# https://www.graphviz.org/), a graph visualization toolkit from AT&T and Lucent
 # Bell Labs. The other options in this section have no effect if this option is
 # set to NO
 # The default value is: NO.
 
 HAVE_DOT               = YES
 
-# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
-# to run in parallel. When set to 0 doxygen will base this on the number of
+# The DOT_NUM_THREADS specifies the number of dot invocations Doxygen is allowed
+# to run in parallel. When set to 0 Doxygen will base this on the number of
 # processors available in the system. You can set it explicitly to a value
 # larger than 0 to get control over the balance between CPU load and processing
 # speed.
@@ -2528,7 +2634,7 @@ DOT_NUM_THREADS        = 0
 
 # DOT_COMMON_ATTR is common attributes for nodes, edges and labels of
 # subgraphs. When you want a differently looking font in the dot files that
-# doxygen generates you can specify fontname, fontcolor and fontsize attributes.
+# Doxygen generates you can specify fontname, fontcolor and fontsize attributes.
 # For details please see <a href=https://graphviz.org/doc/info/attrs.html>Node,
 # Edge and Graph Attributes specification</a> You need to make sure dot is able
 # to find the font, which can be done by putting it in a standard location or by
@@ -2562,35 +2668,47 @@ DOT_NODE_ATTR          = "shape=box,height=0.2,width=0.4"
 
 DOT_FONTPATH           =
 
-# If the CLASS_GRAPH tag is set to YES (or GRAPH) then doxygen will generate a
-# graph for each documented class showing the direct and indirect inheritance
-# relations. In case HAVE_DOT is set as well dot will be used to draw the graph,
-# otherwise the built-in generator will be used. If the CLASS_GRAPH tag is set
-# to TEXT the direct and indirect inheritance relations will be shown as texts /
-# links.
-# Possible values are: NO, YES, TEXT and GRAPH.
+# If the CLASS_GRAPH tag is set to YES or GRAPH or BUILTIN then Doxygen will
+# generate a graph for each documented class showing the direct and indirect
+# inheritance relations. In case the CLASS_GRAPH tag is set to YES or GRAPH and
+# HAVE_DOT is enabled as well, then dot will be used to draw the graph. In case
+# the CLASS_GRAPH tag is set to YES and HAVE_DOT is disabled or if the
+# CLASS_GRAPH tag is set to BUILTIN, then the built-in generator will be used.
+# If the CLASS_GRAPH tag is set to TEXT the direct and indirect inheritance
+# relations will be shown as texts / links. Explicit enabling an inheritance
+# graph or choosing a different representation for an inheritance graph of a
+# specific class, can be accomplished by means of the command \inheritancegraph.
+# Disabling an inheritance graph can be accomplished by means of the command
+# \hideinheritancegraph.
+# Possible values are: NO, YES, TEXT, GRAPH and BUILTIN.
 # The default value is: YES.
 
 CLASS_GRAPH            = YES
 
-# If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a
+# If the COLLABORATION_GRAPH tag is set to YES then Doxygen will generate a
 # graph for each documented class showing the direct and indirect implementation
 # dependencies (inheritance, containment, and class references variables) of the
-# class with other documented classes.
+# class with other documented classes. Explicit enabling a collaboration graph,
+# when COLLABORATION_GRAPH is set to NO, can be accomplished by means of the
+# command \collaborationgraph. Disabling a collaboration graph can be
+# accomplished by means of the command \hidecollaborationgraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 COLLABORATION_GRAPH    = YES
 
-# If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for
-# groups, showing the direct groups dependencies. See also the chapter Grouping
-# in the manual.
+# If the GROUP_GRAPHS tag is set to YES then Doxygen will generate a graph for
+# groups, showing the direct groups dependencies. Explicit enabling a group
+# dependency graph, when GROUP_GRAPHS is set to NO, can be accomplished by means
+# of the command \groupgraph. Disabling a directory graph can be accomplished by
+# means of the command \hidegroupgraph. See also the chapter Grouping in the
+# manual.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 GROUP_GRAPHS           = YES
 
-# If the UML_LOOK tag is set to YES, doxygen will generate inheritance and
+# If the UML_LOOK tag is set to YES, Doxygen will generate inheritance and
 # collaboration diagrams in a style similar to the OMG's Unified Modeling
 # Language.
 # The default value is: NO.
@@ -2611,10 +2729,10 @@ UML_LOOK               = NO
 
 UML_LIMIT_NUM_FIELDS   = 10
 
-# If the DOT_UML_DETAILS tag is set to NO, doxygen will show attributes and
+# If the DOT_UML_DETAILS tag is set to NO, Doxygen will show attributes and
 # methods without types and arguments in the UML graphs. If the DOT_UML_DETAILS
-# tag is set to YES, doxygen will add type and arguments for attributes and
-# methods in the UML graphs. If the DOT_UML_DETAILS tag is set to NONE, doxygen
+# tag is set to YES, Doxygen will add type and arguments for attributes and
+# methods in the UML graphs. If the DOT_UML_DETAILS tag is set to NONE, Doxygen
 # will not generate fields with class member information in the UML graphs. The
 # class diagrams will look similar to the default class diagrams but using UML
 # notation for the relationships.
@@ -2626,8 +2744,8 @@ DOT_UML_DETAILS        = NO
 
 # The DOT_WRAP_THRESHOLD tag can be used to set the maximum number of characters
 # to display on a single line. If the actual line length exceeds this threshold
-# significantly it will wrapped across multiple lines. Some heuristics are apply
-# to avoid ugly line breaks.
+# significantly it will be wrapped across multiple lines. Some heuristics are
+# applied to avoid ugly line breaks.
 # Minimum value: 0, maximum value: 1000, default value: 17.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
@@ -2642,24 +2760,29 @@ DOT_WRAP_THRESHOLD     = 17
 TEMPLATE_RELATIONS     = YES
 
 # If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
-# YES then doxygen will generate a graph for each documented file showing the
+# YES then Doxygen will generate a graph for each documented file showing the
 # direct and indirect include dependencies of the file with other documented
-# files.
+# files. Explicit enabling an include graph, when INCLUDE_GRAPH is is set to NO,
+# can be accomplished by means of the command \includegraph. Disabling an
+# include graph can be accomplished by means of the command \hideincludegraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 INCLUDE_GRAPH          = YES
 
 # If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
-# set to YES then doxygen will generate a graph for each documented file showing
+# set to YES then Doxygen will generate a graph for each documented file showing
 # the direct and indirect include dependencies of the file with other documented
-# files.
+# files. Explicit enabling an included by graph, when INCLUDED_BY_GRAPH is set
+# to NO, can be accomplished by means of the command \includedbygraph. Disabling
+# an included by graph can be accomplished by means of the command
+# \hideincludedbygraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 INCLUDED_BY_GRAPH      = YES
 
-# If the CALL_GRAPH tag is set to YES then doxygen will generate a call
+# If the CALL_GRAPH tag is set to YES then Doxygen will generate a call
 # dependency graph for every global function or class method.
 #
 # Note that enabling this option will significantly increase the time of a run.
@@ -2671,7 +2794,7 @@ INCLUDED_BY_GRAPH      = YES
 
 CALL_GRAPH             = YES
 
-# If the CALLER_GRAPH tag is set to YES then doxygen will generate a caller
+# If the CALLER_GRAPH tag is set to YES then Doxygen will generate a caller
 # dependency graph for every global function or class method.
 #
 # Note that enabling this option will significantly increase the time of a run.
@@ -2683,17 +2806,20 @@ CALL_GRAPH             = YES
 
 CALLER_GRAPH           = YES
 
-# If the GRAPHICAL_HIERARCHY tag is set to YES then doxygen will graphical
+# If the GRAPHICAL_HIERARCHY tag is set to YES then Doxygen will graphical
 # hierarchy of all classes instead of a textual one.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 GRAPHICAL_HIERARCHY    = YES
 
-# If the DIRECTORY_GRAPH tag is set to YES then doxygen will show the
+# If the DIRECTORY_GRAPH tag is set to YES then Doxygen will show the
 # dependencies a directory has on other directories in a graphical way. The
 # dependency relations are determined by the #include relations between the
-# files in the directories.
+# files in the directories. Explicit enabling a directory graph, when
+# DIRECTORY_GRAPH is set to NO, can be accomplished by means of the command
+# \directorygraph. Disabling a directory graph can be accomplished by means of
+# the command \hidedirectorygraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
@@ -2709,7 +2835,7 @@ DIR_GRAPH_MAX_DEPTH    = 5
 # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
 # generated by dot. For an explanation of the image formats see the section
 # output formats in the documentation of the dot tool (Graphviz (see:
-# http://www.graphviz.org/)).
+# https://www.graphviz.org/)).
 # Note: If you choose svg you need to set HTML_FILE_EXTENSION to xhtml in order
 # to make the SVG files visible in IE 9+ (other browsers do not have this
 # requirement).
@@ -2746,11 +2872,12 @@ DOT_PATH               =
 
 DOTFILE_DIRS           =
 
-# The MSCFILE_DIRS tag can be used to specify one or more directories that
-# contain msc files that are included in the documentation (see the \mscfile
-# command).
+# You can include diagrams made with dia in Doxygen documentation. Doxygen will
+# then run dia to produce the diagram and insert it in the documentation. The
+# DIA_PATH tag allows you to specify the directory where the dia binary resides.
+# If left empty dia is assumed to be found in the default search path.
 
-MSCFILE_DIRS           =
+DIA_PATH               =
 
 # The DIAFILE_DIRS tag can be used to specify one or more directories that
 # contain dia files that are included in the documentation (see the \diafile
@@ -2758,7 +2885,7 @@ MSCFILE_DIRS           =
 
 DIAFILE_DIRS           =
 
-# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
+# When using PlantUML, the PLANTUML_JAR_PATH tag should be used to specify the
 # path where java can find the plantuml.jar file or to the filename of jar file
 # to be used. If left blank, it is assumed PlantUML is not used or called during
 # a preprocessing step. Doxygen will generate a warning when it encounters a
@@ -2766,20 +2893,20 @@ DIAFILE_DIRS           =
 
 PLANTUML_JAR_PATH      =
 
-# When using plantuml, the PLANTUML_CFG_FILE tag can be used to specify a
-# configuration file for plantuml.
+# When using PlantUML, the PLANTUML_CFG_FILE tag can be used to specify a
+# configuration file for PlantUML.
 
 PLANTUML_CFG_FILE      =
 
-# When using plantuml, the specified paths are searched for files specified by
-# the !include statement in a plantuml block.
+# When using PlantUML, the specified paths are searched for files specified by
+# the !include statement in a PlantUML block.
 
 PLANTUML_INCLUDE_PATH  =
 
 # The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
 # that will be shown in the graph. If the number of nodes in a graph becomes
-# larger than this value, doxygen will truncate the graph, which is visualized
-# by representing a node as a red box. Note that doxygen if the number of direct
+# larger than this value, Doxygen will truncate the graph, which is visualized
+# by representing a node as a red box. Note that if the number of direct
 # children of the root node in a graph is already larger than
 # DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note that
 # the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
@@ -2809,17 +2936,17 @@ MAX_DOT_GRAPH_DEPTH    = 0
 
 DOT_MULTI_TARGETS      = NO
 
-# If the GENERATE_LEGEND tag is set to YES doxygen will generate a legend page
+# If the GENERATE_LEGEND tag is set to YES Doxygen will generate a legend page
 # explaining the meaning of the various boxes and arrows in the dot generated
 # graphs.
-# Note: This tag requires that UML_LOOK isn't set, i.e. the doxygen internal
+# Note: This tag requires that UML_LOOK isn't set, i.e. the Doxygen internal
 # graphical representation for inheritance and collaboration diagrams is used.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 GENERATE_LEGEND        = YES
 
-# If the DOT_CLEANUP tag is set to YES, doxygen will remove the intermediate
+# If the DOT_CLEANUP tag is set to YES, Doxygen will remove the intermediate
 # files that are used to generate the various graphs.
 #
 # Note: This setting is not only used for dot files but also for msc temporary
@@ -2827,3 +2954,19 @@ GENERATE_LEGEND        = YES
 # The default value is: YES.
 
 DOT_CLEANUP            = YES
+
+# You can define message sequence charts within Doxygen comments using the \msc
+# command. If the MSCGEN_TOOL tag is left empty (the default), then Doxygen will
+# use a built-in version of mscgen tool to produce the charts. Alternatively,
+# the MSCGEN_TOOL tag can also specify the name an external tool. For instance,
+# specifying prog as the value, Doxygen will call the tool as prog -T
+# <outfile_format> -o <outputfile> <inputfile>. The external tool should support
+# output file formats "png", "eps", "svg", and "ismap".
+
+MSCGEN_TOOL            =
+
+# The MSCFILE_DIRS tag can be used to specify one or more directories that
+# contain msc files that are included in the documentation (see the \mscfile
+# command).
+
+MSCFILE_DIRS           =
diff --git a/examples/example_dependencies.json b/examples/example_dependencies.json
new file mode 100644
index 000000000..787d94b4d
--- /dev/null
+++ b/examples/example_dependencies.json
@@ -0,0 +1,26 @@
+{
+  "action_cache_version": 1,
+  "dependencies": [
+    {
+      "name": "StreamDebugger",
+      "owner": "vshymanskyy",
+      "version": "~1.0.1"
+    },
+    {
+      "name": "NeoSWSerial",
+      "version": "https://github.com/SRGDamia1/NeoSWSerial.git"
+    },
+    {
+      "name": "AltSoftSerial",
+      "version": "https://github.com/PaulStoffregen/AltSoftSerial.git"
+    },
+    {
+      "name": "SoftwareWire",
+      "version": "https://github.com/Testato/SoftwareWire.git#v1.5.1"
+    },
+    {
+      "name": "SoftwareSerial_ExternalInts",
+      "version": "https://github.com/EnviroDIY/SoftwareSerial_ExternalInts.git"
+    }
+  ]
+}

From 5b6ab8411a422db37fea0c8f6b4e243c8e463549 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Fri, 9 Aug 2024 11:11:17 -0400
Subject: [PATCH 05/24] Use build examples workflow

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .github/workflows/build_examples.yaml | 237 +-------------------------
 continuous_integration/platformio.ini |  12 +-
 src/sensors/GroPointGPLP8.h           |   4 +-
 3 files changed, 15 insertions(+), 238 deletions(-)

diff --git a/.github/workflows/build_examples.yaml b/.github/workflows/build_examples.yaml
index bfdc620ee..ec772ba06 100644
--- a/.github/workflows/build_examples.yaml
+++ b/.github/workflows/build_examples.yaml
@@ -8,233 +8,10 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-  generate_matrix:
-    name: Generate build matrices
-    runs-on: ubuntu-latest
-    if: "!contains(github.event.head_commit.message, 'ci skip')"
-    outputs:
-      arduino_job_matrix: ${{ steps.py_matrix.outputs.arduino_job_matrix }}
-      pio_job_matrix: ${{ steps.py_matrix.outputs.pio_job_matrix }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.x'
-          cache: 'pip'
-
-      - name: Install python dependencies, including PlatformIO
-        run: pip install -r continuous_integration/requirements.txt
-
-      - name: Generate Matrices
-        id: py_matrix
-        run: |
-          python continuous_integration/generate_job_matrix.py
-
-      - name: Store generated examples
-        uses: actions/upload-artifact@v4
-        with:
-          name: generated_examples
-          path: |
-            continuous_integration_artifacts/
-
-  print_job_matrix:
-    name: print_job_matrix
-    runs-on: ubuntu-latest
-    needs: generate_matrix
-    steps:
-      - name: Check the generated matrix output
-        run: |
-          echo "Arduino job matrix:"
-          echo "${{ needs.generate_matrix.outputs.arduino_job_matrix }}"
-          echo
-          echo "PlatformIO job matrix"
-          echo "${{ needs.generate_matrix.outputs.pio_job_matrix }}"
-
-  determine_library_source:
-    name: determine_library_source
-    runs-on: ubuntu-latest
-    if: "!contains(github.event.head_commit.message, 'ci skip')"
-    outputs:
-      library_install_zip: ${{ steps.store_vars.outputs.library_install_zip }}
-      library_install_git: ${{ steps.store_vars.outputs.library_install_git }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Set environment variables for pushes to any branch in EnviroDIY/ModularSensors
-        if: github.event_name == 'push'
-        run: |
-          echo "Push to commit ${GITHUB_SHA}"
-          echo "LIBRARY_INSTALL_ZIP=https://github.com/${GITHUB_REPOSITORY}/archive/${GITHUB_SHA}.zip" >> $GITHUB_ENV
-          echo "LIBRARY_INSTALL_GIT=https://github.com/${GITHUB_REPOSITORY}.git#${GITHUB_SHA}" >> $GITHUB_ENV
-
-      - name: Set environment variable for PR's from any branch in EnviroDIY/ModularSensors
-        if: github.event_name == 'pull_request' && github.event.pull_request.head.repo.name == github.repository
-        run: |
-          echo "Pull Request from the ${GITHUB_HEAD_REF} branch"
-          echo "LIBRARY_INSTALL_ZIP=https://github.com/${GITHUB_REPOSITORY}/archive/${GITHUB_HEAD_REF}.zip" >> $GITHUB_ENV
-          echo "LIBRARY_INSTALL_GIT=https://github.com/${GITHUB_REPOSITORY}.git#${GITHUB_HEAD_REF}" >> $GITHUB_ENV
-
-      - name: Set environment variable for PR's from any branch in EnviroDIY/ModularSensors
-        if: github.event_name == 'pull_request' && github.event.pull_request.head.repo.name != github.repository
-        run: |
-          echo "Pull Request from the fork ${{ github.event.pull_request.head.repo.full_name }} at ${{ github.event.pull_request.head.ref }}"
-          echo "LIBRARY_INSTALL_ZIP=https://github.com/${{ github.event.pull_request.head.repo.full_name }}/archive/${{ github.event.pull_request.head.ref }}.zip" >> $GITHUB_ENV
-          echo "LIBRARY_INSTALL_GIT=https://github.com/${{ github.event.pull_request.head.repo.full_name }}.git#${{ github.event.pull_request.head.ref }}" >> $GITHUB_ENV
-
-      - name: store enviroment variables as output
-        id: store_vars
-        run: |
-          echo "library_install_zip=${{ env.LIBRARY_INSTALL_ZIP }}" >> $GITHUB_OUTPUT
-          echo "library_install_git=${{ env.LIBRARY_INSTALL_GIT }}" >> $GITHUB_OUTPUT
-
-  print_library_source:
-    name: print_library_source
-    runs-on: ubuntu-latest
-    needs: determine_library_source
-    steps:
-      - name: Check the library installation source
-        run: |
-          echo "Link to zip for Arduino CLI testing install:"
-          echo "${{ needs.determine_library_source.outputs.library_install_zip }}"
-          echo
-          echo "Git reference for PlatformIO testing install"
-          echo "${{ needs.determine_library_source.outputs.library_install_git }}"
-
-  build_ex_arduino:
-    name: ${{ matrix.job_info.job_name }}
-    runs-on: ubuntu-latest
-    needs: [generate_matrix, determine_library_source]
-    env:
-      LIBRARY_INSTALL_ZIP: ${{ needs.determine_library_source.outputs.library_install_zip }}
-    strategy:
-      matrix:
-        job_info: ${{ fromJSON(needs.generate_matrix.outputs.arduino_job_matrix) }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Unused Step
-        run: echo "This is needed to make the step number match with the PlatformIO jobs. =)"
-
-      # We use the `arduino/setup-arduino-cli` action to install and
-      # configure the Arduino CLI on the system.
-      - name: Setup Arduino CLI
-        uses: arduino/setup-arduino-cli@v1.1.2
-
-      - name: Restore Arduino platforms and libraries
-        uses: actions/cache@v4
-        id: cache_libraries
-        with:
-          path: |
-            home/arduino
-          # if nothing in the dependencies.json file has changed, then it will
-          # be a "cache hit" and we can restore libraries from cache and not
-          # download them.  If it has changed we have to re-download.
-          key: ${{ hashFiles('./continuous_integration/dependencies.json','continuous_integration/install-deps-arduino-cli.sh') }}
-
-      # Install cores and library dependencies for the Arduino CLI, iff no cache
-      - name: Install the Arduino libraries
-        if: steps.cache_libraries.outputs.cache-hit != 'true'
-        run: |
-          chmod +x continuous_integration/install-deps-arduino-cli.sh
-          sh continuous_integration/install-deps-arduino-cli.sh
-
-      # Install ModularSensors for the Arduino CLI
-      - name: Install the testing version of Modular Sensors for the Arduino CLI
-        run: |
-          chmod +x continuous_integration/install-test-version-arduino-cli.sh
-          sh continuous_integration/install-test-version-arduino-cli.sh
-
-      - name: Download the prepared examples
-        uses: actions/download-artifact@v4
-        with:
-          name: generated_examples
-          path: |
-            continuous_integration_artifacts/
-
-      - name: Include problem matcher
-        uses: ammaraskar/gcc-problem-matcher@master
-
-      # Run the script to compile the examples
-      - name: Compile
-        env:
-          ACTION_RUN_ID: ${{ github.run_id }}
-        run: |
-          chmod +x ${{ matrix.job_info.script }}
-          bash ${{ matrix.job_info.script }}
-
-      # NOTE:  Don't uninstall for PlatformIO because the library manager will clean up the
-      # dependencies leaving nothing for the cache
-      # pio pkg uninstall --library -g EnviroDIY_ModularSensors
-      - name: Uninstall testing version of Modular Sensors before caching
-        run: |
-          arduino-cli --config-file continuous_integration/arduino_cli.yaml lib uninstall ModularSensors
-
-  build_pio:
-    name: ${{ matrix.job_info.job_name }}
-    runs-on: ubuntu-latest
-    needs: [generate_matrix, determine_library_source]
-    env:
-      LIBRARY_INSTALL_GIT: ${{ needs.determine_library_source.outputs.library_install_git }}
-    strategy:
-      matrix:
-        job_info: ${{ fromJSON(needs.generate_matrix.outputs.pio_job_matrix) }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.x'
-          cache: 'pip'
-
-      - name: Install python dependencies, including PlatformIO
-        run: pip install -r continuous_integration/requirements.txt
-
-      - name: Restore PlatformIO platforms and libraries
-        uses: actions/cache@v4
-        id: cache_libraries
-        with:
-          path: |
-            ~/.platformio
-          # if nothing in the dependencies.json file has changed, then it will
-          # be a "cache hit" and we can restore libraries from cache and not
-          # download them.  If it has changed we have to re-download.
-          key: ${{ hashFiles('./continuous_integration/dependencies.json','continuous_integration/install-deps-platformio.sh') }}
-
-      # Install the dependencies for PlatformIO
-      - name: Install the PlatformIO dependencies at global level
-        if: steps.cache_libraries.outputs.cache-hit != 'true'
-        run: |
-          chmod +x continuous_integration/install-deps-platformio.sh
-          sh continuous_integration/install-deps-platformio.sh
-          cp -a /home/runner/.platformio/lib/. $GITHUB_WORKSPACE/lib/
-
-      # Install ModularSensors at the Global level for PlatformIO
-      # Force install to get the right version
-      - name: Install the testing version of Modular Sensors for PlatformIO
-        run: |
-          pio pkg install -g --library ${{ env.LIBRARY_INSTALL_GIT }}
-
-      - name: Download the prepared examples
-        uses: actions/download-artifact@v4
-        with:
-          name: generated_examples
-          path: |
-            continuous_integration_artifacts/
-
-      - name: Include problem matcher
-        uses: ammaraskar/gcc-problem-matcher@master
-
-      # Run the script to compile the examples
-      - name: Compile
-        env:
-          ACTION_RUN_ID: ${{ github.run_id }}
-        run: |
-          chmod +x ${{ matrix.job_info.script }}
-          bash ${{ matrix.job_info.script }}
+  build_examples:
+    name: Build all examples with PlatformIO and the Arduino CLI
+    if: ${{ ! contains(github.event.head_commit.message, 'ci skip') }}
+    uses: EnviroDIY/workflows/.github/workflows/build_examples.yaml@main
+    with:
+      boards_to_build: 'mayfly,megaatmega2560,zeroUSB,adafruit_feather_m0'
+    secrets: inherit
diff --git a/continuous_integration/platformio.ini b/continuous_integration/platformio.ini
index 263173d30..6b56d0d53 100644
--- a/continuous_integration/platformio.ini
+++ b/continuous_integration/platformio.ini
@@ -26,7 +26,7 @@ build_flags =
     -D SDI12_EXTERNAL_PCINT
     -D NEOSWSERIAL_EXTERNAL_PCINT
 
-[env:Mayfly]
+[env:mayfly]
 board = mayfly
 platform = atmelavr
 lib_ignore =
@@ -36,7 +36,7 @@ lib_ignore =
 build_flags =
     ${env.build_flags}
 
-[env:Mega]
+[env:mega]
 platform = atmelavr
 board = megaatmega2560
 lib_ignore =
@@ -46,7 +46,7 @@ lib_ignore =
 build_flags =
     ${env.build_flags}
 
-[env:Zero]
+[env:zero]
 platform = atmelsam
 board = zeroUSB
 lib_ignore =
@@ -58,7 +58,7 @@ lib_ignore =
 build_flags =
     ${env.build_flags}
 
-[env:FeatherM0]
+[env:feather_m0]
 platform = atmelsam
 board = adafruit_feather_m0
 lib_ignore =
@@ -71,7 +71,7 @@ build_flags =
     ${env.build_flags}
 build_unflags = -D USE_TINYUSB
 
-; [env:FeatherM4]
+; [env:feather_m4]
 ; platform = atmelsam
 ; board = adafruit_feather_m4
 ; lib_ignore =
@@ -86,7 +86,7 @@ build_unflags = -D USE_TINYUSB
 ;     -D MS_SAMD_DS3231
 ; build_unflags = -D USE_TINYUSB
 
-; [env:GrandCentralM4]
+; [env:grandcentral_m4]
 ; platform = atmelsam
 ; board = adafruit_grandcentral_m4
 ; lib_ignore =
diff --git a/src/sensors/GroPointGPLP8.h b/src/sensors/GroPointGPLP8.h
index 869ea74b3..c73a34244 100644
--- a/src/sensors/GroPointGPLP8.h
+++ b/src/sensors/GroPointGPLP8.h
@@ -26,7 +26,7 @@
  * Profiling Probe. Classes for the GroPoint Profile GPLP-8 Soil Moisture &
  * Temperature Probe.
  *
- * @ingroup GroPoint_group
+ * @ingroup gropoint_group
  *
  * @tableofcontents
  * @m_footernavigation
@@ -34,7 +34,7 @@
  * @section sensor_gplp8_datasheet Sensor Datasheet
  * - [GroPoint Profile User Manual](https://www.gropoint.com/s/2625-N-T-GroPoint-Profile-User-Manual-V113.pdf), including Modbus Instructions.
  * - [GroPoint Profile Technical Info](https://www.gropoint.com/s/GroPoint-Profile-Technical-Info.pdf)
- * *
+ *
  * @section sensor_gplp8_ctor Sensor Constructor
  * {{ @ref GroPointGPLP8::GroPointGPLP8 }}
  *

From f09491d32505610a340ead79558056d6682cebe7 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 12:53:35 -0400
Subject: [PATCH 06/24] Update doxyfile

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 docs/Doxyfile                                 |   57 +-
 .../m-EnviroDIY+documentation.compiled.css    | 4397 -----------------
 docs/markdown_prefilter.py                    |  355 --
 3 files changed, 30 insertions(+), 4779 deletions(-)
 delete mode 100644 docs/css/m-EnviroDIY+documentation.compiled.css
 delete mode 100644 docs/markdown_prefilter.py

diff --git a/docs/Doxyfile b/docs/Doxyfile
index f6ceb512d..3b2217a8f 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -67,7 +67,7 @@ PROJECT_LOGO           = ModularSensors_ubuntu_264x55.png
 # when the HTML document is shown. Doxygen will copy the logo to the output
 # directory.
 
-PROJECT_ICON           =
+PROJECT_ICON           = enviroDIY_Favicon.png
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
@@ -135,7 +135,7 @@ BRIEF_MEMBER_DESC      = YES
 # brief descriptions will be completely suppressed.
 # The default value is: YES.
 
-REPEAT_BRIEF           = YES
+REPEAT_BRIEF           = NO
 
 # This tag implements a quasi-intelligent brief description abbreviator that is
 # used to form the text in various listings. Each string in this list, if found
@@ -245,7 +245,7 @@ QT_AUTOBRIEF           = NO
 # not recognized any more.
 # The default value is: NO.
 
-MULTILINE_CPP_IS_BRIEF = NO
+MULTILINE_CPP_IS_BRIEF = YES
 
 # By default Python docstrings are displayed as preformatted text and Doxygen's
 # special commands cannot be used. By setting PYTHON_DOCSTRING to NO the
@@ -289,9 +289,9 @@ TAB_SIZE               = 4
 # with the commands \{ and \} for these it is advised to use the version @{ and
 # @} or use a double escape (\\{ and \\})
 
-ALIASES                = "license=@par License:\n" \
-                         "environment=@par Development Environment:\n" \
-                         "platform=@par Hardware Platform:\n" \
+ALIASES                = "license=@par License^^" \
+                         "environment=@par Development Environment^^" \
+                         "platform=@par Hardware Platform^^" \
                          "m_div{1}=@xmlonly<mcss:div xmlns:mcss=\"http://mcss.mosra.cz/doxygen/\" mcss:class=\"\1\">@endxmlonly" \
                          "m_enddiv=@xmlonly</mcss:div>@endxmlonly" \
                          "m_span{1}=@xmlonly<mcss:span xmlns:mcss=\"http://mcss.mosra.cz/doxygen/\" mcss:class=\"\1\">@endxmlonly" \
@@ -541,19 +541,19 @@ TIMESTAMP              = YES
 # normally produced when WARNINGS is set to YES.
 # The default value is: NO.
 
-EXTRACT_ALL            = YES
+EXTRACT_ALL            = NO
 
 # If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will
 # be included in the documentation.
 # The default value is: NO.
 
-EXTRACT_PRIVATE        = NO
+EXTRACT_PRIVATE        = YES
 
 # If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual
 # methods of a class will be included in the documentation.
 # The default value is: NO.
 
-EXTRACT_PRIV_VIRTUAL   = NO
+EXTRACT_PRIV_VIRTUAL   = YES
 
 # If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal
 # scope will be included in the documentation.
@@ -565,7 +565,7 @@ EXTRACT_PACKAGE        = NO
 # included in the documentation.
 # The default value is: NO.
 
-EXTRACT_STATIC         = NO
+EXTRACT_STATIC         = YES
 
 # If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined
 # locally in source files will be included in the documentation. If set to NO,
@@ -940,7 +940,7 @@ WARN_IF_UNDOC_ENUM_VAL = YES
 # Possible values are: NO, YES, FAIL_ON_WARNINGS and FAIL_ON_WARNINGS_PRINT.
 # The default value is: NO.
 
-WARN_AS_ERROR          = FAIL_ON_WARNINGS
+WARN_AS_ERROR          = FAIL_ON_WARNINGS_PRINT
 
 # The WARN_FORMAT tag determines the format of the warning messages that Doxygen
 # can produce. The string should contain the $file, $line, and $text tags, which
@@ -1032,6 +1032,7 @@ FILE_PATTERNS          = *.c \
                          *.hxx \
                          *.hpp \
                          *.h++ \
+                         *.tpp \
                          *.inc \
                          *.m \
                          *.markdown \
@@ -1039,8 +1040,7 @@ FILE_PATTERNS          = *.c \
                          *.mm \
                          *.dox \
                          *.doc \
-                         *.txt \
-                         *.tpp
+                         *.txt
 
 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.
@@ -1059,7 +1059,10 @@ EXCLUDE                = ../src/ReadMe.md \
                          ../examples/logger_test \
                          ../examples/logger_test_nonew \
                          ../examples/YosemitechDO \
-                         ../src/sensors/table.md
+                         ../src/sensors/table.md \
+                         ../lib \
+                         ../boards \
+                         ../variants
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -1177,7 +1180,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the Doxygen output.
 
-USE_MDFILE_AS_MAINPAGE = README.md
+USE_MDFILE_AS_MAINPAGE =
 
 # The Fortran standard specifies that for fixed formatted Fortran code all
 # characters from position 72 are to be considered as comment. A common
@@ -2620,7 +2623,7 @@ HIDE_UNDOC_RELATIONS   = NO
 # set to NO
 # The default value is: NO.
 
-HAVE_DOT               = YES
+HAVE_DOT               = NO
 
 # The DOT_NUM_THREADS specifies the number of dot invocations Doxygen is allowed
 # to run in parallel. When set to 0 Doxygen will base this on the number of
@@ -2683,7 +2686,7 @@ DOT_FONTPATH           =
 # Possible values are: NO, YES, TEXT, GRAPH and BUILTIN.
 # The default value is: YES.
 
-CLASS_GRAPH            = YES
+CLASS_GRAPH            = NO
 
 # If the COLLABORATION_GRAPH tag is set to YES then Doxygen will generate a
 # graph for each documented class showing the direct and indirect implementation
@@ -2695,7 +2698,7 @@ CLASS_GRAPH            = YES
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-COLLABORATION_GRAPH    = YES
+COLLABORATION_GRAPH    = NO
 
 # If the GROUP_GRAPHS tag is set to YES then Doxygen will generate a graph for
 # groups, showing the direct groups dependencies. Explicit enabling a group
@@ -2706,7 +2709,7 @@ COLLABORATION_GRAPH    = YES
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-GROUP_GRAPHS           = YES
+GROUP_GRAPHS           = NO
 
 # If the UML_LOOK tag is set to YES, Doxygen will generate inheritance and
 # collaboration diagrams in a style similar to the OMG's Unified Modeling
@@ -2757,7 +2760,7 @@ DOT_WRAP_THRESHOLD     = 17
 # The default value is: NO.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-TEMPLATE_RELATIONS     = YES
+TEMPLATE_RELATIONS     = NO
 
 # If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
 # YES then Doxygen will generate a graph for each documented file showing the
@@ -2768,7 +2771,7 @@ TEMPLATE_RELATIONS     = YES
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-INCLUDE_GRAPH          = YES
+INCLUDE_GRAPH          = NO
 
 # If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
 # set to YES then Doxygen will generate a graph for each documented file showing
@@ -2780,7 +2783,7 @@ INCLUDE_GRAPH          = YES
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-INCLUDED_BY_GRAPH      = YES
+INCLUDED_BY_GRAPH      = NO
 
 # If the CALL_GRAPH tag is set to YES then Doxygen will generate a call
 # dependency graph for every global function or class method.
@@ -2792,7 +2795,7 @@ INCLUDED_BY_GRAPH      = YES
 # The default value is: NO.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-CALL_GRAPH             = YES
+CALL_GRAPH             = NO
 
 # If the CALLER_GRAPH tag is set to YES then Doxygen will generate a caller
 # dependency graph for every global function or class method.
@@ -2804,14 +2807,14 @@ CALL_GRAPH             = YES
 # The default value is: NO.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-CALLER_GRAPH           = YES
+CALLER_GRAPH           = NO
 
 # If the GRAPHICAL_HIERARCHY tag is set to YES then Doxygen will graphical
 # hierarchy of all classes instead of a textual one.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-GRAPHICAL_HIERARCHY    = YES
+GRAPHICAL_HIERARCHY    = NO
 
 # If the DIRECTORY_GRAPH tag is set to YES then Doxygen will show the
 # dependencies a directory has on other directories in a graphical way. The
@@ -2823,7 +2826,7 @@ GRAPHICAL_HIERARCHY    = YES
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-DIRECTORY_GRAPH        = YES
+DIRECTORY_GRAPH        = NO
 
 # The DIR_GRAPH_MAX_DEPTH tag can be used to limit the maximum number of levels
 # of child directories generated in directory dependency graphs by dot.
@@ -2845,7 +2848,7 @@ DIR_GRAPH_MAX_DEPTH    = 5
 # The default value is: png.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-DOT_IMAGE_FORMAT       = png
+DOT_IMAGE_FORMAT       = svg
 
 # If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
 # enable generation of interactive SVG images that allow zooming and panning.
diff --git a/docs/css/m-EnviroDIY+documentation.compiled.css b/docs/css/m-EnviroDIY+documentation.compiled.css
deleted file mode 100644
index ce5c1158e..000000000
--- a/docs/css/m-EnviroDIY+documentation.compiled.css
+++ /dev/null
@@ -1,4397 +0,0 @@
-/* Generated using `./postprocess.py m-EnviroDIY.css m-documentation.css -o m-EnviroDIY+documentation.compiled.css`. Do not edit. */
-
-/*
-    This file is part of m.css.
-
-    Copyright © 2017, 2018, 2019, 2020, 2021, 2022
-              Vladimír Vondruš <mosra@centrum.cz>
-
-    Permission is hereby granted, free of charge, to any person obtaining a
-    copy of this software and associated documentation files (the "Software"),
-    to deal in the Software without restriction, including without limitation
-    the rights to use, copy, modify, merge, publish, distribute, sublicense,
-    and/or sell copies of the Software, and to permit persons to whom the
-    Software is furnished to do so, subject to the following conditions:
-
-    The above copyright notice and this permission notice shall be included
-    in all copies or substantial portions of the Software.
-
-    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
-    THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
-    FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
-    DEALINGS IN THE SOFTWARE.
-*/
-
-*, ::before, ::after { box-sizing: border-box; }
-body { margin: 0; }
-.m-container {
-  width: 100%;
-  margin: auto;
-  padding-left: 1rem;
-  padding-right: 1rem;
-}
-.m-row {
-  margin-left: -1rem;
-  margin-right: -1rem;
-}
-.m-row::after {
-  content: ' ';
-  clear: both;
-  display: table;
-}
-.m-row > [class*='m-col-'] {
-  position: relative;
-  padding: 1rem;
-}
-[class*='m-clearfix-']::after {
-  display: block;
-  content: ' ';
-  clear: both;
-}
-[class*='m-show-'] {
-  display: none;
-}
-.m-container-inflate, :not(.m-row) > [class*='m-col-'] {
-  margin-bottom: 1rem;
-}
-.m-container-inflate:last-child, :not(.m-row) > [class*='m-col-']:last-child {
-  margin-bottom: 0;
-}
-.m-container.m-nopad, [class*='m-col-'].m-nopad,
-.m-container.m-nopadx, [class*='m-col-'].m-nopadx,
-.m-container.m-nopadl, [class*='m-col-'].m-nopadl {
-  padding-left: 0;
-}
-.m-container.m-nopad, [class*='m-col-'].m-nopad,
-.m-container.m-nopadx, [class*='m-col-'].m-nopadx,
-.m-container.m-nopadr, [class*='m-col-'].m-nopadr {
-  padding-right: 0;
-}
-[class*='m-col-'].m-nopad, [class*='m-col-'].m-nopady, [class*='m-col-'].m-nopadt {
-  padding-top: 0;
-}
-[class*='m-col-'].m-nopad, [class*='m-col-'].m-nopady, [class*='m-col-'].m-nopadb,
-.m-container-inflate.m-nopadb {
-  padding-bottom: 0;
-}
-[class*='m-col-t-'] { float: left; }
-.m-left-t {
-  padding-right: 1rem;
-  float: left;
-}
-.m-right-t, [class*='m-col-t-'].m-right-t {
-  padding-left: 1rem;
-  float: right;
-}
-.m-center-t, [class*='m-col-t-'].m-center-t {
-  float: none;
-}
-.m-center-t, [class*='m-col-t-'].m-center-t {
-  margin-left: auto;
-  margin-right: auto;
-  float: none;
-}
-.m-col-t-1  { width: calc(1  * 100% / 12); }
-.m-col-t-2  { width: calc(2  * 100% / 12); }
-.m-col-t-3  { width: calc(3  * 100% / 12); }
-.m-col-t-4  { width: calc(4  * 100% / 12); }
-.m-col-t-5  { width: calc(5  * 100% / 12); }
-.m-col-t-6  { width: calc(6  * 100% / 12); }
-.m-col-t-7  { width: calc(7  * 100% / 12); }
-.m-col-t-8  { width: calc(8  * 100% / 12); }
-.m-col-t-9  { width: calc(9  * 100% / 12); }
-.m-col-t-10 { width: calc(10 * 100% / 12); }
-.m-col-t-11 { width: calc(11 * 100% / 12); }
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-.m-pull-t-9  { right: calc(9  * 100% / 12); }
-.m-pull-t-10 { right: calc(10 * 100% / 12); }
-.m-pull-t-11 { right: calc(11 * 100% / 12); }
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-  .m-container { width: 560px; }
-  .m-container-inflatable .m-col-s-10 .m-container-inflate:not([class*='m-left-']):not([class*='m-right-']) {
-    margin-left: -10%;
-    margin-right: -10%;
-  }
-  .m-container-inflatable .m-col-s-10 .m-container-inflate.m-left-s {
-    margin-left: -10%;
-  }
-  .m-container-inflatable .m-col-s-10 .m-container-inflate.m-right-s {
-    margin-right: -10%;
-  }
-  [class*='m-col-s-'] { float: left; }
-  .m-left-s {
-    padding-right: 1rem;
-    float: left;
-  }
-  .m-right-s, [class*='m-col-s-'].m-right-s {
-    padding-left: 1rem;
-    float: right;
-  }
-  .m-center-s, [class*='m-col-s-'].m-center-s {
-    margin-left: auto;
-    margin-right: auto;
-    float: none;
-  }
-  .m-col-s-1  { width: calc(1  * 100% / 12); }
-  .m-col-s-2  { width: calc(2  * 100% / 12); }
-  .m-col-s-3  { width: calc(3  * 100% / 12); }
-  .m-col-s-4  { width: calc(4  * 100% / 12); }
-  .m-col-s-5  { width: calc(5  * 100% / 12); }
-  .m-col-s-6  { width: calc(6  * 100% / 12); }
-  .m-col-s-7  { width: calc(7  * 100% / 12); }
-  .m-col-s-8  { width: calc(8  * 100% / 12); }
-  .m-col-s-9  { width: calc(9  * 100% / 12); }
-  .m-col-s-10 { width: calc(10 * 100% / 12); }
-  .m-col-s-11 { width: calc(11 * 100% / 12); }
-  .m-col-s-12 { width: calc(12 * 100% / 12); }
-  .m-push-s-0  { left: calc(0  * 100% / 12); }
-  .m-push-s-1  { left: calc(1  * 100% / 12); }
-  .m-push-s-2  { left: calc(2  * 100% / 12); }
-  .m-push-s-3  { left: calc(3  * 100% / 12); }
-  .m-push-s-4  { left: calc(4  * 100% / 12); }
-  .m-push-s-5  { left: calc(5  * 100% / 12); }
-  .m-push-s-6  { left: calc(6  * 100% / 12); }
-  .m-push-s-7  { left: calc(7  * 100% / 12); }
-  .m-push-s-8  { left: calc(8  * 100% / 12); }
-  .m-push-s-9  { left: calc(9  * 100% / 12); }
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-  .m-pull-s-1  { right: calc(1  * 100% / 12); }
-  .m-pull-s-2  { right: calc(2  * 100% / 12); }
-  .m-pull-s-3  { right: calc(3  * 100% / 12); }
-  .m-pull-s-4  { right: calc(4  * 100% / 12); }
-  .m-pull-s-5  { right: calc(5  * 100% / 12); }
-  .m-pull-s-6  { right: calc(6  * 100% / 12); }
-  .m-pull-s-7  { right: calc(7  * 100% / 12); }
-  .m-pull-s-8  { right: calc(8  * 100% / 12); }
-  .m-pull-s-9  { right: calc(9  * 100% / 12); }
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-  .m-container { width: 750px; }
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-    margin-left: -10%;
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-    margin-left: -10%;
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-    margin-right: -10%;
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-  .m-push-m-3  { left: calc(3  * 100% / 12); }
-  .m-push-m-4  { left: calc(4  * 100% / 12); }
-  .m-push-m-5  { left: calc(5  * 100% / 12); }
-  .m-push-m-6  { left: calc(6  * 100% / 12); }
-  .m-push-m-7  { left: calc(7  * 100% / 12); }
-  .m-push-m-8  { left: calc(8  * 100% / 12); }
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-}
-@media screen and (min-width: 992px) {
-  .m-container { width: 960px; }
-  .m-container-inflatable .m-col-l-10 .m-container-inflate:not([class*='m-left-']):not([class*='m-right-']) {
-    margin-left: -10%;
-    margin-right: -10%;
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-  .m-container-inflatable .m-col-l-10 .m-container-inflate.m-left-l {
-    margin-left: -10%;
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-  .m-container-inflatable .m-col-l-10 .m-container-inflate.m-right-l {
-    margin-right: -10%;
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-  [class*='m-col-l-'] { float: left; }
-  .m-left-l {
-    padding-right: 1rem;
-    float: left;
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-    padding-left: 1rem;
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-    margin-left: auto;
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-  .m-col-l-1  { width: calc(1  * 100% / 12); }
-  .m-col-l-2  { width: calc(2  * 100% / 12); }
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-  .m-col-l-5  { width: calc(5  * 100% / 12); }
-  .m-col-l-6  { width: calc(6  * 100% / 12); }
-  .m-col-l-7  { width: calc(7  * 100% / 12); }
-  .m-col-l-8  { width: calc(8  * 100% / 12); }
-  .m-col-l-9  { width: calc(9  * 100% / 12); }
-  .m-col-l-10 { width: calc(10 * 100% / 12); }
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-  .m-col-l-12 { width: calc(12 * 100% / 12); }
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-  .m-push-l-2  { left: calc(2  * 100% / 12); }
-  .m-push-l-3  { left: calc(3  * 100% / 12); }
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-  .m-push-l-5  { left: calc(5  * 100% / 12); }
-  .m-push-l-6  { left: calc(6  * 100% / 12); }
-  .m-push-l-7  { left: calc(7  * 100% / 12); }
-  .m-push-l-8  { left: calc(8  * 100% / 12); }
-  .m-push-l-9  { left: calc(9  * 100% / 12); }
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-  .m-pull-l-3  { right: calc(3  * 100% / 12); }
-  .m-pull-l-4  { right: calc(4  * 100% / 12); }
-  .m-pull-l-5  { right: calc(5  * 100% / 12); }
-  .m-pull-l-6  { right: calc(6  * 100% / 12); }
-  .m-pull-l-7  { right: calc(7  * 100% / 12); }
-  .m-pull-l-8  { right: calc(8  * 100% / 12); }
-  .m-pull-l-9  { right: calc(9  * 100% / 12); }
-  .m-pull-l-10 { right: calc(10 * 100% / 12); }
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-}
-
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-}
-body {
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-pre {
-  padding: 0.5rem 1rem;
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-.m-fullwidth {
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-.m-spacing-150 {
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-.m-text-center,
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-}
-.m-text-left,
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-}
-.m-text-right,
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-}
-.m-text-top,
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-}
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-}
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-}
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-  ul.m-block-bar-s,
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-    padding-left: 2rem;
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-  ul.m-block-bar-s li,
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-}
-@media screen and (min-width: 768px) {
-  ul.m-block-bar-m,
-  ol.m-block-bar-m,
-  ul.m-block-dot-m,
-  ol.m-block-dot-m {
-    padding-left: 2rem;
-  }
-  ul.m-block-bar-m li,
-  ol.m-block-bar-m li,
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-  ol.m-block-dot-m li {
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-  }
-  ul.m-block-bar-m li:not(:last-child)::after,
-  ol.m-block-bar-m li:not(:last-child)::after,
-  ul.m-block-dot-m li:not(:last-child)::after,
-  ol.m-block-dot-m li:not(:last-child)::after {
-    content: "";
-  }
-}
-@media screen and (min-width: 992px) {
-  ul.m-block-bar-l,
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-  ol.m-block-dot-l {
-    padding-left: 2rem;
-  }
-  ul.m-block-bar-l li,
-  ol.m-block-bar-l li,
-  ul.m-block-dot-l li,
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-  }
-  ul.m-block-bar-l li:not(:last-child)::after,
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-  ul.m-block-dot-l li:not(:last-child)::after,
-  ol.m-block-dot-l li:not(:last-child)::after {
-    content: "";
-  }
-}
-p.m-poem {
-  text-indent: 0;
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-  margin-left: 1.5rem;
-}
-p.m-transition {
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-}
-dl.m-diary {
-  margin-bottom: 1.25rem;
-}
-dl.m-diary:last-child {
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-dl.m-diary dt {
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-dl.m-diary dd {
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-}
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-  top: -0.35rem;
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-a.m-footnote,
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-}
-a.m-footnote::before {
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-dl.m-footnote dt {
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-}
-dl.m-footnote dd {
-  margin-left: 1.5rem;
-}
-dl.m-footnote {
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-dl.m-footnote dd span.m-footnote a {
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-.m-container-inflatable {
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-}
-.m-frame {
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-  padding: 0.875rem;
-}
-.m-block {
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diff --git a/docs/markdown_prefilter.py b/docs/markdown_prefilter.py
deleted file mode 100644
index 2ab05e26f..000000000
--- a/docs/markdown_prefilter.py
+++ /dev/null
@@ -1,355 +0,0 @@
-#!/usr/bin/env python
-#%%
-import enum
-import fileinput
-import re
-import sys
-import string
-
-# a helper function to go from snake back to camel
-def snake_to_camel(snake_str):
-    components = snake_str.strip().split("_")
-    # We capitalize the first letter of each component except the first one
-    # with the 'title' method and join them together.
-    camel_str = components[0] + "".join(x.title() for x in components[1:])
-    if camel_str.startswith("_"):
-        return camel_str[1:]
-    else:
-        return camel_str
-
-
-def camel_to_snake(name):
-    name = name.strip().replace(" ", "_")
-    name = re.sub("(.)([A-Z][a-z]+)", r"\1_\2", name.strip())
-    return re.sub("([a-z0-9])([A-Z])", r"\1_\2", name).lower()
-
-
-def github_slugify(name):
-    return (
-        name.strip()
-        .lower()
-        .replace(
-            "-", " "
-        )  # convert dashes to spaces so they don't get lost with other punctuation
-        .translate(str.maketrans("", "", string.punctuation))
-        .replace("  ", " ")
-        .replace("  ", " ")
-        .replace(" ", "-")
-    )
-
-
-# Add a start comment to make the entire markdown file function as a comment block
-# Without this doxygen sometimes recognizes its own special commands, but mostly doesn't
-# Not needed anymore with doxygen 1.9.3?
-# try:
-#     sys.stdout.buffer.write("\n/**\n".encode("utf-8"))
-# except Exception as e:
-#     print("\n*/\n\n")
-
-#%%
-print_me = True
-skip_me = False
-i = 1
-
-# when testing use:
-# with fileinput.FileInput("..\\ChangeLog.md",
-#     openhook=fileinput.hook_encoded("utf-8", "surrogateescape")
-# ) as input:
-
-with fileinput.FileInput(
-    openhook=fileinput.hook_encoded("utf-8", "surrogateescape")
-) as input:
-    for line in input:
-        if input.isfirstline():
-            # Get the file name and directory
-            # We'll use this to create the section id comment
-            file_name_dir = input.filename()
-            if "\\" in file_name_dir:
-                seper = "\\"
-            else:
-                seper = "/"
-            # sys.stdout.buffer.write("Separator: '{}'\n".format(seper).encode("utf-8"))
-            file_dir = file_name_dir.rsplit(sep=seper, maxsplit=1)[0]
-            file_name_ext = file_name_dir.rsplit(sep=seper, maxsplit=1)[1]
-            file_name = file_name_ext.rsplit(sep=".", maxsplit=1)[0]
-            file_ext = file_name_ext.rsplit(sep=".", maxsplit=1)[1]
-            # sys.stdout.buffer.write(
-            #     "File Directory: {}, File Name: {}, File Extension: {}\n".format(
-            #         file_dir, file_name, file_ext
-            #     ).encode("utf-8")
-            # )
-            # For the example walk-throughs, written in the ReadMe files,
-            # we want the example name, which is part of the directory.
-            if "examples" in file_dir and file_name == "ReadMe":
-                file_name = "example_" + file_dir.rsplit(sep=seper, maxsplit=1)[-1]
-
-        # print(i, print_me, skip_me, line)
-
-        # I'm using these comments to fence off content that is only intended for
-        # github mardown rendering
-        if "[//]: # ( Start GitHub Only )" in line:
-            print_me = False
-
-        # copy the original line to work with
-        massaged_line = line
-        # Convert markdown comment tags to c++/dox style comment tags
-        massaged_line = re.sub(r"\[//\]: # \( @(\w+?.*) \)", r"@\1", massaged_line)
-        # allow thank you tags
-        massaged_line = massaged_line.replace("thanks to @", r"thanks to \@")
-
-        # Convert GitHub pages url's to refs
-        # I'm putting the long URL in the markdown because I want the links there to
-        # work and go to the pages.  But when feeding it to Doxygen, I want them to be
-        # ref's so Doxygen will both check the existence of the refs and create new
-        # links for them.
-
-        # For links to sections, doxygen cuts off the first letter of the section name
-        # in the examples (UGH), so some acrobatics to find them
-        massaged_line = re.sub(
-            r"https://envirodiy.github.io/ModularSensors/[\w/-]+\.html#enu_walk_(?P<section_name>[\w/-]+)",
-            r"@ref menu_walk_\g<section_name>",
-            massaged_line,
-        )
-        # for classes, we need to switch camel and snake cases
-        class_link = re.search(
-            r"https://envirodiy.github.io/ModularSensors/(?:class)(?P<class_link>[\w/-]+)\.html",
-            massaged_line,
-        )
-        if class_link is not None:
-            camel_link = snake_to_camel(class_link.group("class_link"))
-            massaged_line = re.sub(
-                r"https://envirodiy.github.io/ModularSensors/(?:class)(?P<class_link>[\w/-]+)\.html",
-                r"@ref #" + camel_link,
-                massaged_line,
-            )
-        # for groups, we need to clean out extra underscores
-        group_link = re.search(
-            r"https://envirodiy.github.io/ModularSensors/(?:group__)(?P<group_link>[\w/-]+)\.html",
-            massaged_line,
-        )
-        if group_link is not None:
-            camel_link = group_link.group("group_link").replace("__", "_")
-            massaged_line = re.sub(
-                r"https://envirodiy.github.io/ModularSensors/(?:group__)(?P<group_link>[\w/-]+)\.html",
-                r"@ref #" + camel_link,
-                massaged_line,
-            )
-        # for examples, we need to clean out extra underscores
-        example_link = re.search(
-            r"https://envirodiy.github.io/ModularSensors/(?P<example_name>[\w/-]+)_8ino-example\.html",
-            massaged_line,
-        )
-        if example_link is not None:
-            camel_link = snake_to_camel(example_link.group("example_name"))
-            massaged_line = re.sub(
-                r"https://envirodiy.github.io/ModularSensors/(?P<example_name>[\w/-]+)_8ino-example\.html",
-                "@ref " + snake_to_camel(example_link.group("example_name")) + ".ino",
-                massaged_line,
-            )
-
-        # If it's the index itself, we want to replace with a reference to the mainpage
-        massaged_line = re.sub(
-            r"https://envirodiy.github.io/ModularSensors/index.html#(?P<section_name>[\w/-]+)",
-            r"@ref \g<section_name>",
-            massaged_line,
-        )
-        massaged_line = re.sub(
-            r"https://envirodiy.github.io/ModularSensors/index.html",
-            "@ref mainpage",
-            massaged_line,
-        )
-
-        # for anything other link to the docs, we the text as it is and hope it
-        # lines up with a real reference
-        massaged_line = re.sub(
-            r"https://envirodiy.github.io/ModularSensors/(?P<section_name>[\w/-]+)\.html",
-            r"@ref \g<section_name>",
-            massaged_line,
-        )
-
-        # Add a PHP Markdown Extra style header id to the end of header sections
-        # use the GitHub anchor plus the file name as the section id.
-        # GitHub anchors for headers are the text, stripped of punctuation,
-        # with the spaces replaced by hyphens.
-        markdown_header = re.match(
-            r"(?P<heading_pounds>#{1,6})\s+(?P<section_name>[^<>\{\}\#]+)",
-            massaged_line,
-        )
-        php_extra_header_label = re.search(r"\{#(.+)\}", massaged_line)
-        anchor_header = re.search(
-            r"<a name=\"(?P<section_anchor>\w+)\"></a>", massaged_line
-        )
-        if (
-            file_name is not None
-            and file_name != "ChangeLog"
-            and markdown_header is not None
-            and php_extra_header_label is None
-            and anchor_header is None
-        ):
-            massaged_line = (
-                markdown_header.group("heading_pounds")
-                + " "
-                + markdown_header.group("section_name").strip()
-                + "  {#"
-                + camel_to_snake(file_name)
-                + "_"
-                + github_slugify(markdown_header.group("section_name"))
-                + "}\n"
-            )
-
-        elif (
-            file_name is not None
-            and file_name != "ChangeLog"
-            and markdown_header is not None
-            and php_extra_header_label is not None
-        ):
-            # unhide PHP Markdown Extra header id's hidding in GitHub flavored markdown comments
-            massaged_line = re.sub(r"<!-- \{#(.+)\} -->", r"{#\1}", massaged_line,)
-            # if input.isfirstline():
-            # else:
-            #     massaged_line = (
-            #         markdown_header.group("heading_pounds")
-            #         + " "
-            #         + markdown_header.group("section_name").strip()
-            #         + "  {#"
-            #         + camel_to_snake(file_name)
-            #         + "_"
-            #         + github_slugify(markdown_header.group("section_name"))
-            #         + "}\n"
-            #     )
-
-        elif (
-            file_name is not None
-            and file_name != "ChangeLog"
-            and markdown_header is not None
-            and anchor_header is not None
-        ):
-            # convert anchors to section names
-            massaged_line = re.sub(
-                r"<a name=\"(?P<section_anchor>\w+)\"></a>",
-                r"{#\g<section_anchor>}",
-                massaged_line,
-            )
-
-        # Special work-arounds for the change log
-        if file_name is not None and file_name == "ChangeLog":
-            if line.startswith("# ChangeLog"):
-                massaged_line = "# ChangeLog {#change_log}\n"
-            version_re = re.match(
-                r"#{2}\s+(?P<changelog_link>\[(?P<version_number>[^\{\}\#]+?)\])(?P<version_info>.*)",
-                massaged_line,
-            )
-            version_action_re = re.match(
-                r"#{3}\s+(?P<section_name>(?:Changed)|(?:Added)|(?:Removed)|(?:Fixed)|(?:Known Issues))",
-                massaged_line,
-            )
-            if version_re is not None:
-                change_log_version = (
-                    version_re.group("version_number").strip().lower().replace(".", "-")
-                )
-                change_log_link = version_re.group("changelog_link")
-                massaged_line = (
-                    "@section "
-                    + camel_to_snake(file_name)
-                    + "_"
-                    + change_log_version
-                    + " "
-                    + version_re.group("version_number")
-                    + version_re.group("version_info")
-                    + "\n"
-                    + "GitHub Release: "
-                    + change_log_link
-                    # + "\n" #NOTE:  Adding the new line here would offset all doxygen line numbers
-                )
-            if version_action_re is not None:
-                massaged_line = (
-                    massaged_line.rstrip()
-                    + "  {#"
-                    + camel_to_snake(file_name)
-                    + "_"
-                    + change_log_version
-                    + "_"
-                    + camel_to_snake(version_action_re.group("section_name"))
-                    + "}\n"
-                )
-
-        # convert internal hash-tag links to reference links
-        internal_hash_link = re.search(
-            r"\]\(#(?P<internal_anchor>[\w/-]+)\)", massaged_line,
-        )
-        if internal_hash_link is not None:
-            massaged_line = re.sub(
-                r"\]\(#(?P<internal_anchor>[\w/-]+)\)",
-                "](@ref "
-                + camel_to_snake(file_name)
-                + "_"
-                + github_slugify(internal_hash_link.group("internal_anchor"))
-                + ")",
-                massaged_line,
-            )
-
-        # finally replace code blocks with doxygen's prefered code block
-        massaged_line = (
-            massaged_line.replace("```ini", "@code{.ini}")
-            .replace("```cpp", "@code{.cpp}")
-            .replace("```", "@endcode")
-        )
-
-        # hide lines that are not printed or skipped
-        # write out an empty comment line to keep the line numbers identical
-        if skip_me or not print_me:
-            massaged_line = "<!--" + massaged_line.strip() + "-->\n"
-
-        if (
-            massaged_line.count("\n") != line.count("\n")
-            or line.count("\n") != 1
-            or massaged_line.count("\n") != 1
-        ):
-            raise Exception(
-                '\n\nNot exactly one new lines\nFile:{}\nLine Number:{}\nNew Lines in Original: {}\nOriginal Line:\n"{}"\nNew Lines after Massage: {}\nMassaged Line:\n"{}"\n\n'.format(
-                    input.filename(),
-                    input.filelineno(),
-                    line.count("\n"),
-                    line,
-                    massaged_line.count("\n"),
-                    massaged_line,
-                )
-            )
-
-        # write out the result
-        try:
-            sys.stdout.buffer.write(massaged_line.encode("utf-8"))
-        except Exception as e:
-            print(massaged_line, end="")
-
-        # using skip_me to skip single lines, so unset it after reading a line
-        if skip_me:
-            skip_me = False
-
-        # a page, section, subsection, or subsubsection commands followed
-        # immediately with by a markdown header leads to that section appearing
-        # twice in the doxygen html table of contents.
-        # I'm putting the section markers right above the header and then will skip the header.
-        if re.match(r"\[//\]: # \( @mainpage", line) is not None:
-            skip_me = True
-        if re.match(r"\[//\]: # \( @page", line) is not None:
-            skip_me = True
-        if re.match(r"\[//\]: # \( @.*section", line) is not None:
-            skip_me = True
-        if re.match(r"\[//\]: # \( @paragraph", line) is not None:
-            skip_me = True
-
-        # I'm using these comments to fence off content that is only intended for
-        # github mardown rendering
-        if "[//]: # ( End GitHub Only )" in line:
-            print_me = True
-
-        i += 1
-
-#%%
-# Close the comment for doxygen
-# Not needed anymore with doxygen 1.9.3?
-# try:
-#     sys.stdout.buffer.write("\n*/\n\n".encode("utf-8"))
-# except Exception as e:
-#     print("\n*/\n\n")

From 8ecaa7f009b4554e328973cd4b3182101dae3bc1 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 12:58:06 -0400
Subject: [PATCH 07/24] Reorder example headers

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 ChangeLog.md                                     |  6 +++---
 examples/DRWI_2G/DRWI_2G.ino                     | 14 ++++----------
 examples/DRWI_DigiLTE/DRWI_DigiLTE.ino           | 14 ++++----------
 examples/DRWI_Mayfly1/DRWI_Mayfly1.ino           | 16 +++++-----------
 examples/DRWI_Mayfly1_WiFi/DRWI_Mayfly1_WiFi.ino | 16 +++++-----------
 examples/DRWI_NoCellular/DRWI_NoCellular.ino     | 14 ++++----------
 examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino     | 16 +++++-----------
 .../baro_rho_correction/baro_rho_correction.ino  | 14 ++++----------
 examples/data_saving/data_saving.ino             | 14 ++++----------
 examples/double_logger/double_logger.ino         | 14 ++++----------
 examples/logging_to_MMW/logging_to_MMW.ino       | 14 ++++----------
 .../logging_to_ThingSpeak.ino                    | 14 ++++----------
 examples/menu_a_la_carte/menu_a_la_carte.ino     | 14 ++++----------
 examples/simple_logging/simple_logging.ino       | 14 ++++----------
 .../simple_logging_LearnEnviroDIY.ino            | 14 ++++----------
 examples/single_sensor/single_sensor.ino         | 14 ++++----------
 16 files changed, 66 insertions(+), 156 deletions(-)

diff --git a/ChangeLog.md b/ChangeLog.md
index 54f53cbc7..02115b910 100644
--- a/ChangeLog.md
+++ b/ChangeLog.md
@@ -1,9 +1,9 @@
 # ChangeLog
 All notable changes to this project will be documented in this file.
 
-The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
-and its stricter, better defined, brother [Common Changelog](https://common-changelog.org/),
-and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and its stricter, better defined, brother [Common Changelog](https://common-changelog.org/).
+
+This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ***
 
diff --git a/examples/DRWI_2G/DRWI_2G.ino b/examples/DRWI_2G/DRWI_2G.ino
index f87e4d531..c901f66bb 100644
--- a/examples/DRWI_2G/DRWI_2G.ino
+++ b/examples/DRWI_2G/DRWI_2G.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file DRWI_2G.ino
- * @brief Example for DRWI CitSci 2G sites.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} DRWI_2G.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example for DRWI CitSci 2G sites.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino b/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino
index c051cf25f..49f6e8890 100644
--- a/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino
+++ b/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file DRWI_DigiLTE.ino
- * @brief Example for DRWI CitSci LTE sites.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} DRWI_DigiLTE.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example for DRWI CitSci LTE sites.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino b/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino
index 469752715..02cff99de 100644
--- a/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino
+++ b/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino
@@ -1,5 +1,9 @@
 /** =========================================================================
- * @file DRWI_Mayfly1.ino
+ * @example{lineno} DRWI_Mayfly1.ino
+ * @copyright Stroud Water Research Center
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ *
  * @brief Example for DRWI CitSci LTE sites.
  *
  * This example shows proper settings for the following configuration:
@@ -7,16 +11,6 @@
  * Mayfly v1.0 board
  * EnviroDIY SIM7080 LTE module (with Hologram SIM card)
  * Hydros21 CTD sensor
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
- * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
-
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
- *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_Mayfly1_WiFi/DRWI_Mayfly1_WiFi.ino b/examples/DRWI_Mayfly1_WiFi/DRWI_Mayfly1_WiFi.ino
index 5ca4cb510..022cc0638 100644
--- a/examples/DRWI_Mayfly1_WiFi/DRWI_Mayfly1_WiFi.ino
+++ b/examples/DRWI_Mayfly1_WiFi/DRWI_Mayfly1_WiFi.ino
@@ -1,5 +1,9 @@
 /** =========================================================================
- * @file DRWI_Mayfly1_WiFi.ino
+ * @example{lineno} DRWI_Mayfly1_WiFi.ino
+ * @copyright Stroud Water Research Center
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ *
  * @brief Example for DRWI CitSci LTE sites.
  *
  * This example shows proper settings for the following configuration:
@@ -7,16 +11,6 @@
  * Mayfly v1.x board
  * EnviroDIY ESP32 Wifi Bee module
  * Hydros21 CTD sensor
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
- * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
-
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
- *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_NoCellular/DRWI_NoCellular.ino b/examples/DRWI_NoCellular/DRWI_NoCellular.ino
index e5928cedb..ec301d231 100644
--- a/examples/DRWI_NoCellular/DRWI_NoCellular.ino
+++ b/examples/DRWI_NoCellular/DRWI_NoCellular.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file DRWI_NoCellular.ino
- * @brief Example for DRWI CitSci without cellular service.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} DRWI_NoCellular.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example for DRWI CitSci without cellular service.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino b/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino
index 3b08000e3..bb1d48a69 100644
--- a/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino
+++ b/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino
@@ -1,5 +1,9 @@
 /** =========================================================================
- * @file DRWI_SIM7080LTE.ino
+ * @example{lineno} DRWI_SIM7080LTE.ino
+ * @copyright Stroud Water Research Center
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ *
  * @brief Example for DRWI CitSci LTE sites.
  *
  * This example shows proper settings for the following configuration:
@@ -8,16 +12,6 @@
  * EnviroDIY SIM7080 LTE module (with Hologram SIM card)
  * Hydros21 CTD sensor
  * Campbell Scientific OBS3+ Turbidity sensor
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
- * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
-
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
- *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/baro_rho_correction/baro_rho_correction.ino b/examples/baro_rho_correction/baro_rho_correction.ino
index 929f08184..a41c31317 100644
--- a/examples/baro_rho_correction/baro_rho_correction.ino
+++ b/examples/baro_rho_correction/baro_rho_correction.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file baro_rho_correction.ino
- * @brief Example demonstrating calculated variables.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} baro_rho_correction.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example demonstrating calculated variables.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/data_saving/data_saving.ino b/examples/data_saving/data_saving.ino
index ce4e179ac..0878f2e2d 100644
--- a/examples/data_saving/data_saving.ino
+++ b/examples/data_saving/data_saving.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file data_saving.ino
- * @brief Example publishing only a portion of the logged variables.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} data_saving.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example publishing only a portion of the logged variables.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/double_logger/double_logger.ino b/examples/double_logger/double_logger.ino
index 85f7f2f63..c9bfef8ee 100644
--- a/examples/double_logger/double_logger.ino
+++ b/examples/double_logger/double_logger.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file double_logger.ino
- * @brief Example logging at two different timing intervals
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} double_logger.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example logging at two different timing intervals
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/logging_to_MMW/logging_to_MMW.ino b/examples/logging_to_MMW/logging_to_MMW.ino
index d48d98046..18620f659 100644
--- a/examples/logging_to_MMW/logging_to_MMW.ino
+++ b/examples/logging_to_MMW/logging_to_MMW.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file logging_to_MMW.ino
- * @brief Example logging data and publishing to Monitor My Watershed.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} logging_to_MMW.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example logging data and publishing to Monitor My Watershed.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino b/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino
index 7a0044662..d490ad05a 100644
--- a/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino
+++ b/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file logging_to_ThingSpeak.ino
- * @brief Example logging data and publishing to ThingSpeak.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} logging_to_ThingSpeak.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example logging data and publishing to ThingSpeak.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/menu_a_la_carte/menu_a_la_carte.ino b/examples/menu_a_la_carte/menu_a_la_carte.ino
index 89ceb7e85..63a951df3 100644
--- a/examples/menu_a_la_carte/menu_a_la_carte.ino
+++ b/examples/menu_a_la_carte/menu_a_la_carte.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file menu_a_la_carte.ino
- * @brief Example with all possible functionality.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} menu_a_la_carte.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief Example with all possible functionality.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/simple_logging/simple_logging.ino b/examples/simple_logging/simple_logging.ino
index a31804449..f6332d89f 100644
--- a/examples/simple_logging/simple_logging.ino
+++ b/examples/simple_logging/simple_logging.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file simple_logging.ino
- * @brief A simple data logging example.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} simple_logging.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief A simple data logging example.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino b/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino
index 5edeaa3ab..6b0cfd4c6 100644
--- a/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino
+++ b/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file simple_logging_LearnEnviroDIY.ino
- * @brief A data logging example for the Learn EnviroDIY tutorial.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} simple_logging_LearnEnviroDIY.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief A data logging example for the Learn EnviroDIY tutorial.
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/single_sensor/single_sensor.ino b/examples/single_sensor/single_sensor.ino
index 76d3863df..d33d755bb 100644
--- a/examples/single_sensor/single_sensor.ino
+++ b/examples/single_sensor/single_sensor.ino
@@ -1,16 +1,10 @@
 /** =========================================================================
- * @file single_sensor.ino
- * @brief An example using only sensor functions and no logging.
- *
- * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
+ * @example{lineno} single_sensor.ino
  * @copyright Stroud Water Research Center
- * This example is published under the BSD-3 license.
- *
- * Build Environment: Visual Studio Code with PlatformIO
- * Hardware Platform: EnviroDIY Mayfly Arduino Datalogger
+ * @license This example is published under the BSD-3 license.
+ * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
- * DISCLAIMER:
- * THIS CODE IS PROVIDED "AS IS" - NO WARRANTY IS GIVEN.
+ * @brief An example using only sensor functions and no logging.
  * ======================================================================= */
 
 // ==========================================================================

From da58b30256458a64037cfaf062b803a3c51b7551 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 13:28:52 -0400
Subject: [PATCH 08/24] Remove redundant example docs

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 docs/Doxyfile                                 |  6 +-
 examples/DRWI_2G/DRWI_2G.ino                  |  4 +
 examples/DRWI_DigiLTE/DRWI_DigiLTE.ino        |  5 ++
 examples/DRWI_Mayfly1/DRWI_Mayfly1.ino        |  5 ++
 examples/DRWI_NoCellular/DRWI_NoCellular.ino  |  5 ++
 examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino  |  5 ++
 .../baro_rho_correction.ino                   |  4 +
 examples/data_saving/data_saving.ino          |  5 ++
 examples/double_logger/double_logger.ino      |  5 ++
 examples/examples.dox                         | 74 -------------------
 examples/logging_to_MMW/logging_to_MMW.ino    |  4 +
 .../logging_to_ThingSpeak.ino                 |  5 ++
 examples/menu_a_la_carte/menu_a_la_carte.ino  |  4 +
 examples/simple_logging/simple_logging.ino    |  5 ++
 .../simple_logging_LearnEnviroDIY.ino         |  5 ++
 examples/single_sensor/single_sensor.ino      |  5 ++
 16 files changed, 70 insertions(+), 76 deletions(-)

diff --git a/docs/Doxyfile b/docs/Doxyfile
index 3b2217a8f..cd9b07517 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -547,13 +547,13 @@ EXTRACT_ALL            = NO
 # be included in the documentation.
 # The default value is: NO.
 
-EXTRACT_PRIVATE        = YES
+EXTRACT_PRIVATE        = NO
 
 # If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual
 # methods of a class will be included in the documentation.
 # The default value is: NO.
 
-EXTRACT_PRIV_VIRTUAL   = YES
+EXTRACT_PRIV_VIRTUAL   = NO
 
 # If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal
 # scope will be included in the documentation.
@@ -1059,6 +1059,8 @@ EXCLUDE                = ../src/ReadMe.md \
                          ../examples/logger_test \
                          ../examples/logger_test_nonew \
                          ../examples/YosemitechDO \
+                         ../examples/DRWI_2024_CTDandClarivue_LTE_20240724 \
+                         ../examples/DRWI_Mayfly1_Wifi_5tm_ds18b20_1 \
                          ../src/sensors/table.md \
                          ../lib \
                          ../boards \
diff --git a/examples/DRWI_2G/DRWI_2G.ino b/examples/DRWI_2G/DRWI_2G.ino
index c901f66bb..60b5aaab0 100644
--- a/examples/DRWI_2G/DRWI_2G.ino
+++ b/examples/DRWI_2G/DRWI_2G.ino
@@ -5,6 +5,10 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example for DRWI CitSci 2G sites.
+ *
+ * See [the walkthrough page](@ref example_drwi_2g) for detailed instructions.
+ *
+ * @m_examplenavigation{example_drwi_2g,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino b/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino
index 49f6e8890..10d18f5ee 100644
--- a/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino
+++ b/examples/DRWI_DigiLTE/DRWI_DigiLTE.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example for DRWI CitSci LTE sites.
+ *
+ * See [the walkthrough page](@ref example_drwi_digilte) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_drwi_digilte,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino b/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino
index 02cff99de..da12af231 100644
--- a/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino
+++ b/examples/DRWI_Mayfly1/DRWI_Mayfly1.ino
@@ -11,6 +11,11 @@
  * Mayfly v1.0 board
  * EnviroDIY SIM7080 LTE module (with Hologram SIM card)
  * Hydros21 CTD sensor
+ *
+ * See [the walkthrough page](@ref example_drwi_mayfly1) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_drwi_mayfly1,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_NoCellular/DRWI_NoCellular.ino b/examples/DRWI_NoCellular/DRWI_NoCellular.ino
index ec301d231..e132cf530 100644
--- a/examples/DRWI_NoCellular/DRWI_NoCellular.ino
+++ b/examples/DRWI_NoCellular/DRWI_NoCellular.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example for DRWI CitSci without cellular service.
+ *
+ * See [the walkthrough page](@ref example_drwi_no_cell) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_drwi_no_cell,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino b/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino
index bb1d48a69..b0bddb992 100644
--- a/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino
+++ b/examples/DRWI_SIM7080LTE/DRWI_SIM7080LTE.ino
@@ -12,6 +12,11 @@
  * EnviroDIY SIM7080 LTE module (with Hologram SIM card)
  * Hydros21 CTD sensor
  * Campbell Scientific OBS3+ Turbidity sensor
+ *
+ * See [the walkthrough page](@ref example_drwi_ediylte) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_drwi_ediylte,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/baro_rho_correction/baro_rho_correction.ino b/examples/baro_rho_correction/baro_rho_correction.ino
index a41c31317..790ac9b94 100644
--- a/examples/baro_rho_correction/baro_rho_correction.ino
+++ b/examples/baro_rho_correction/baro_rho_correction.ino
@@ -5,6 +5,10 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example demonstrating calculated variables.
+ *
+ * See [the walkthrough page](@ref example_baro_rho) for detailed instructions.
+ *
+ * @m_examplenavigation{example_baro_rho,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/data_saving/data_saving.ino b/examples/data_saving/data_saving.ino
index 0878f2e2d..e6f445415 100644
--- a/examples/data_saving/data_saving.ino
+++ b/examples/data_saving/data_saving.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example publishing only a portion of the logged variables.
+ *
+ * See [the walkthrough page](@ref example_data_saving) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_data_saving,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/double_logger/double_logger.ino b/examples/double_logger/double_logger.ino
index c9bfef8ee..d202fe2c4 100644
--- a/examples/double_logger/double_logger.ino
+++ b/examples/double_logger/double_logger.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example logging at two different timing intervals
+ *
+ * See [the walkthrough page](@ref example_double_log) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_double_log,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/examples.dox b/examples/examples.dox
index 864fcf6be..a7397cfa4 100644
--- a/examples/examples.dox
+++ b/examples/examples.dox
@@ -7,22 +7,6 @@
  * @m_innerpage{example_simple_logging}
  * @m_innerpage{example_learn_envirodiy}
  */
-/**
- * @example{lineno} single_sensor.ino @m_examplenavigation{example_single_sensor,} @m_footernavigation
- * @brief An example using only sensor functions and no logging.
- * See [the walkthrough page](@ref example_single_sensor) for detailed instructions.
- */
-/**
- * @example{lineno} simple_logging.ino @m_examplenavigation{example_simple_logging,} @m_footernavigation
- * @brief A simple data logging example.
- * See [the walkthrough page](@ref example_simple_logging) for detailed instructions.
- */
-/**
- * @example{lineno} simple_logging_LearnEnviroDIY.ino @m_examplenavigation{example_learn_envirodiy,} @m_footernavigation
- * @brief A data logging example for the Learn EnviroDIY tutorial.
- * See [the walkthrough page](@ref example_learn_envirodiy) for detailed instructions.
- */
-
 
 /**
  * @page page_the_examples
@@ -32,17 +16,6 @@
  * @m_innerpage{example_mmw}
  * @m_innerpage{example_thingspeak}
  */
-/**
- * @example{lineno} logging_to_MMW.ino @m_examplenavigation{example_mmw,} @m_footernavigation
- * @brief Example logging data and publishing to Monitor My Watershed.
- * See [the walkthrough page](@ref example_mmw) for detailed instructions.
- */
-/**
- * @example{lineno} logging_to_ThingSpeak.ino @m_examplenavigation{example_thingspeak,} @m_footernavigation
- * @brief Example logging data and publishing to ThingSpeak.
- * See [the walkthrough page](@ref example_thingspeak) for detailed instructions.
- */
-
 
 /**
  * @page page_the_examples
@@ -53,22 +26,6 @@
  * @m_innerpage{example_double_log}
  * @m_innerpage{example_data_saving}
  */
-/**
- * @example{lineno} baro_rho_correction.ino @m_examplenavigation{example_baro_rho,} @m_footernavigation
- * @brief Example demonstrating calculated variables.
- * See [the walkthrough page](@ref example_baro_rho) for detailed instructions.
- */
-/**
- * @example{lineno} double_logger.ino @m_examplenavigation{example_double_log,} @m_footernavigation
- * @brief Example logging at two different timing intervals
- * See [the walkthrough page](@ref example_double_log) for detailed instructions.
- */
-/**
- * @example{lineno} data_saving.ino @m_examplenavigation{example_data_saving,} @m_footernavigation
- * @brief Example publishing only a portion of the logged variables.
- * See [the walkthrough page](@ref example_data_saving) for detailed instructions.
- */
-
 
 /**
  * @page page_the_examples
@@ -81,32 +38,6 @@
  * @m_innerpage{example_drwi_2g}
  * @m_innerpage{example_drwi_no_cell}
  */
-/**
- * @example{lineno} DRWI_Mayfly1.ino @m_examplenavigation{example_drwi_mayfly1,} @m_footernavigation
- * @brief Example for DRWI CitSci LTE sites with a Mayfly 1.x utilizing on-board sensors.
- * See [the walkthrough page](@ref example_drwi_mayfly1) for detailed instructions.
- */
-/**
- * @example{lineno} DRWI_SIM7080LTE.ino @m_examplenavigation{example_drwi_ediylte,} @m_footernavigation
- * @brief Example for DRWI CitSci LTE sites.
- * See [the walkthrough page](@ref example_drwi_ediylte) for detailed instructions.
- */
-/**
- * @example{lineno} DRWI_DigiLTE.ino @m_examplenavigation{example_drwi_digilte,} @m_footernavigation
- * @brief Example for DRWI CitSci LTE sites.
- * See [the walkthrough page](@ref example_drwi_digilte) for detailed instructions.
- */
-/**
- * @example{lineno} DRWI_2G.ino @m_examplenavigation{example_drwi_2g,} @m_footernavigation
- * @brief Example for DRWI CitSci 2G sites.
- * See [the walkthrough page](@ref example_drwi_2g) for detailed instructions.
- */
-/**
- * @example{lineno} DRWI_NoCellular.ino @m_examplenavigation{example_drwi_no_cell,} @m_footernavigation
- * @brief Example for DRWI CitSci without cellular service.
- * See [the walkthrough page](@ref example_drwi_no_cell) for detailed instructions.
- */
-
 
 /**
  * @page page_the_examples
@@ -115,8 +46,3 @@
  * [Everything at Once - a la carte](@ref examples_everything)
  * @m_innerpage{example_menu}
  */
-/**
- * @example{lineno} menu_a_la_carte.ino @m_examplenavigation{example_menu,} @m_footernavigation
- * @brief Example with all possible functionality.
- * See [the walkthrough page](@ref example_menu) for detailed instructions.
- */
diff --git a/examples/logging_to_MMW/logging_to_MMW.ino b/examples/logging_to_MMW/logging_to_MMW.ino
index 18620f659..eece23667 100644
--- a/examples/logging_to_MMW/logging_to_MMW.ino
+++ b/examples/logging_to_MMW/logging_to_MMW.ino
@@ -5,6 +5,10 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example logging data and publishing to Monitor My Watershed.
+ *
+ * See [the walkthrough page](@ref example_mmw) for detailed instructions.
+ *
+ * @m_examplenavigation{example_mmw,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino b/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino
index d490ad05a..e61adb42c 100644
--- a/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino
+++ b/examples/logging_to_ThingSpeak/logging_to_ThingSpeak.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example logging data and publishing to ThingSpeak.
+ *
+ * See [the walkthrough page](@ref example_thingspeak) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_thingspeak,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/menu_a_la_carte/menu_a_la_carte.ino b/examples/menu_a_la_carte/menu_a_la_carte.ino
index 63a951df3..28a888ea2 100644
--- a/examples/menu_a_la_carte/menu_a_la_carte.ino
+++ b/examples/menu_a_la_carte/menu_a_la_carte.ino
@@ -5,6 +5,10 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief Example with all possible functionality.
+ *
+ * See [the walkthrough page](@ref example_menu) for detailed instructions.
+ *
+ * @m_examplenavigation{example_menu,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/simple_logging/simple_logging.ino b/examples/simple_logging/simple_logging.ino
index f6332d89f..36fe79d8e 100644
--- a/examples/simple_logging/simple_logging.ino
+++ b/examples/simple_logging/simple_logging.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief A simple data logging example.
+ *
+ * See [the walkthrough page](@ref example_simple_logging) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_simple_logging,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino b/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino
index 6b0cfd4c6..4cb6db5d9 100644
--- a/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino
+++ b/examples/simple_logging_LearnEnviroDIY/simple_logging_LearnEnviroDIY.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief A data logging example for the Learn EnviroDIY tutorial.
+ *
+ * See [the walkthrough page](@ref example_learn_envirodiy) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_learn_envirodiy,}
  * ======================================================================= */
 
 // ==========================================================================
diff --git a/examples/single_sensor/single_sensor.ino b/examples/single_sensor/single_sensor.ino
index d33d755bb..acfb50978 100644
--- a/examples/single_sensor/single_sensor.ino
+++ b/examples/single_sensor/single_sensor.ino
@@ -5,6 +5,11 @@
  * @author Sara Geleskie Damiano <sdamiano@stroudcenter.org>
  *
  * @brief An example using only sensor functions and no logging.
+ *
+ * See [the walkthrough page](@ref example_single_sensor) for detailed
+ * instructions.
+ *
+ * @m_examplenavigation{example_single_sensor,}
  * ======================================================================= */
 
 // ==========================================================================

From 186b5bf6efacbaa032b4ad133e4c1d63e1380218 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 13:59:01 -0400
Subject: [PATCH 09/24] Remove files redundant with workflow repo, update doxy
 fil

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .../beautify_arduino_lint_log.py              |  42 --------
 .../build-install-doxygen.sh                  |  61 -----------
 docs/Doxyfile                                 |   7 +-
 docs/copyFunctions.py                         | 101 ------------------
 docs/mcss-Doxyfile                            |   8 +-
 5 files changed, 10 insertions(+), 209 deletions(-)
 delete mode 100644 continuous_integration/beautify_arduino_lint_log.py
 delete mode 100644 continuous_integration/build-install-doxygen.sh
 delete mode 100644 docs/copyFunctions.py

diff --git a/continuous_integration/beautify_arduino_lint_log.py b/continuous_integration/beautify_arduino_lint_log.py
deleted file mode 100644
index 726f573bc..000000000
--- a/continuous_integration/beautify_arduino_lint_log.py
+++ /dev/null
@@ -1,42 +0,0 @@
-#%%
-import json
-import os
-
-in_json = open(os.environ["GITHUB_WORKSPACE"] + "/arduino_lint.json")
-arduino_lint_results = json.load(in_json)
-
-out_md = open(os.environ["GITHUB_WORKSPACE"] + "/arduino_lint.md", "w+")
-
-out_md.write("## Results of testing examples\n\n")
-out_md.write(" | Path | Project Type | Result | Problems | \n")
-out_md.write(" | --- | --- | --- | --- | \n")
-for project in arduino_lint_results["projects"]:
-    fail_list = "<ul>"
-    for failed_rule in project["rules"]:
-        if failed_rule["result"] != "pass":
-            fail_list += "<li>{}{}<ul>".format(
-                failed_rule["ID"],
-                " - {}".format(failed_rule["brief"])
-                if failed_rule["brief"] != ""
-                else "",
-            )
-            fail_list += "<li> **{}**{}</li>".format(
-                failed_rule["level"],
-                " - {}".format(failed_rule["message"].replace("\n", "<br/><br/>"))
-                if failed_rule["message"] != ""
-                else "",
-            )
-            fail_list += "</ul></li>"
-    fail_list += "</ul>"
-    out_md.write(
-        " | {} | {} | {} | {} | \n".format(
-            project["path"]
-            .replace(os.environ.get("GITHUB_WORKSPACE"), "")
-            .replace("examples\\", ""),
-            project["projectType"],
-            ":white_check_mark:" if project["summary"]["pass"] else ":x:",
-            fail_list,
-        )
-    )
-
-#%%
diff --git a/continuous_integration/build-install-doxygen.sh b/continuous_integration/build-install-doxygen.sh
deleted file mode 100644
index f67d8cd51..000000000
--- a/continuous_integration/build-install-doxygen.sh
+++ /dev/null
@@ -1,61 +0,0 @@
-#!/bin/bash
-
-# Makes the bash script print out every command before it is executed, except echo
-trap '[[ $BASH_COMMAND != echo* ]] && echo $BASH_COMMAND' DEBUG
-
-# Exit with nonzero exit code if anything fails
-set -e
-
-# install all the dependencies for make for Doxygen and m.css
-sudo apt-get update
-sudo apt-get -y install build-essential
-sudo apt-get -y install flex
-sudo apt-get -y install bison
-
-# install TeX Live for LaTeX formula rendering
-sudo apt-get -y install texlive-base
-sudo apt-get -y install texlive-latex-extra
-sudo apt-get -y install texlive-fonts-extra
-sudo apt-get -y install texlive-fonts-recommended
-
-echo "\e[32m\n\n\nCurrent TeX version...\e[0m"
-tex --version
-echo "\n\n\n"
-
-# install Graphviz for DOT class diagrams
-sudo apt-get -y install graphviz
-
-echo "\e[32m\n\n\nCurrent graphviz version...\e[0m"
-dot -v
-echo "\n\n\n"
-
-cd $GITHUB_WORKSPACE
-
-if [ ! -f $GITHUB_WORKSPACE/doxygen-src/build/bin/doxygen ]; then
-    
-    # Build instructions from: https://www.stack.nl/~dimitri/doxygen/download.html
-    echo "\e[32mCloning doxygen repository...\e[0m"
-    git clone https://github.com/doxygen/doxygen.git doxygen-src --branch $DOXYGEN_VERSION --depth 1
-    
-    cd doxygen-src
-    
-    echo "\e[32mCreate build folder...\e[0m"
-    mkdir build
-    cd build
-    
-    echo "\e[32mMake...\e[0m"
-    cmake -G "Unix Makefiles" ..
-    make
-    echo "\e[32mDone building doxygen.\e[0m"
-    echo "\e[32mdoxygen path: \e[0m" $(pwd)
-fi
-
-echo "\e[32m\n\n\nCurrent Doxygen version...\e[0m"
-$GITHUB_WORKSPACE/doxygen-src/build/bin/doxygen -v
-echo "\n\n\n"
-
-# echo "\e[32mMove Doxygen to working directory"
-# cp $GITHUB_WORKSPACE/doxygen-src/build/bin/* $GITHUB_WORKSPACE/code_docs/ModularSensors
-# #make install
-
-cd $GITHUB_WORKSPACE/code_docs/ModularSensors
diff --git a/docs/Doxyfile b/docs/Doxyfile
index cd9b07517..f1c5914d1 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -74,7 +74,7 @@ PROJECT_ICON           = enviroDIY_Favicon.png
 # entered, it will be relative to the location where Doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = ../../ModularSensorsDoxygen
+OUTPUT_DIRECTORY       = ../../ModularSensors_Doxygen
 
 # If the CREATE_SUBDIRS tag is set to YES then Doxygen will create up to 4096
 # sub-directories (in 2 levels) under the output directory of each output format
@@ -1064,7 +1064,8 @@ EXCLUDE                = ../src/ReadMe.md \
                          ../src/sensors/table.md \
                          ../lib \
                          ../boards \
-                         ../variants
+                         ../variants \
+                         ../continuous_integration_artifacts
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -1347,7 +1348,7 @@ IGNORE_PREFIX          =
 # If the GENERATE_HTML tag is set to YES, Doxygen will generate HTML output
 # The default value is: YES.
 
-GENERATE_HTML          = NO
+GENERATE_HTML          = YES
 
 # The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a
 # relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
diff --git a/docs/copyFunctions.py b/docs/copyFunctions.py
deleted file mode 100644
index 3e0c64f56..000000000
--- a/docs/copyFunctions.py
+++ /dev/null
@@ -1,101 +0,0 @@
-#!/usr/bin/env python
-import fileinput
-import re
-import os
-import glob
-import xml.etree.ElementTree as ET
-from html.parser import HTMLParser
-from bs4 import BeautifulSoup
-
-fileDir = os.path.dirname(os.path.realpath("__file__"))
-# print("Program Directory: {}".format(fileDir))
-relative_dir = "../../ModularSensorsDoxygen/m.css/"
-abs_file_path = os.path.join(fileDir, relative_dir)
-abs_file_path = os.path.abspath(os.path.realpath(abs_file_path))
-# print("XML Directory: {}".format(fileDir))
-
-all_files = [
-    f
-    for f in os.listdir(abs_file_path)
-    if os.path.isfile(os.path.join(abs_file_path, f))
-    and f.endswith(".html")
-    and not f.endswith("fixed")
-]
-
-
-def get_section_to_paste(match: re.Match) -> str:
-    source_file = match.group("copy_source_file")
-    # print(source_file)
-    source_section = match.group("copy_section_id")
-    # print(source_section)
-    with open(os.path.join(abs_file_path, source_file), encoding="utf8") as fp:
-        soup = BeautifulSoup(fp, "html.parser")
-        details = soup.find(id=source_section)
-        # print("Details:", details, "\n\n")
-        link = details.find("a", class_="m-doc-self")
-        # print("Link:", link, "\n\n")
-        link["href"] = source_file + "#" + source_section
-        # print("Link:", link, "\n\n")
-        # print("Details:", details, "\n\n")
-        return str(details)
-
-    # tree = ET.parse()
-    # root = tree.getroot()
-
-    # for definition in root.iter("compounddef"):
-    #     # print(definition.attrib)
-    #     compound_id = definition.attrib["id"]
-    #     # print(compound_id)
-    #     # print("---")
-
-
-# {{ <a href="class_a_o_song_a_m2315___humidity.html#ab201cd06c49eec79df6263b8da8f10e3" class="m-doc">AOSongAM2315_Humidity::<wbr />AOSongAM2315_Humidity</a> }}
-files_to_copy_to = []
-for filename in all_files:
-    abs_in = os.path.join(abs_file_path, filename)
-    abs_out = os.path.join(abs_file_path, filename + "_fixed")
-    copy_paste_needed = False
-    # with open(os.path.join(abs_file_path, filename)) as fp:
-    #     soup = BeautifulSoup(fp, "html.parser")
-    #     for find in soup.find_all(string=[re.compile("\{\{")]):
-    #         print(find.find_parent("p").a.get("href"))
-
-    with open(abs_in, "r", encoding="utf8") as in_file:  # open in readonly mode
-        lines = in_file.readlines()
-        i = 0
-        new_lines = []
-        for line in lines:
-            i += 1
-            new_line = line
-            match = re.search(
-                r'{{ <a href="(?P<copy_source_file>.*?)#(?P<copy_section_id>.*?)" .*? }}',
-                line,
-            )
-            if match is not None:
-                copy_paste_needed = True
-                new_line = re.sub(
-                    r'{{ <a href="(?P<copy_source_file>.*?)#(?P<copy_section_id>.*?)" .*? }}',
-                    get_section_to_paste,
-                    line,
-                )
-                print(
-                    filename,
-                    i,
-                    match.group("copy_source_file"),
-                    match.group("copy_section_id"),
-                )
-            new_lines.append(new_line)
-
-    if copy_paste_needed:
-        with open(abs_out, "w+", encoding="utf8") as out_file:
-            for line in new_lines:
-                out_file.write(line)
-
-        os.rename(
-            os.path.join(abs_file_path, filename),
-            os.path.join(abs_file_path, filename + "_original"),
-        )
-        os.rename(
-            os.path.join(abs_file_path, filename + "_fixed"),
-            os.path.join(abs_file_path, filename),
-        )
diff --git a/docs/mcss-Doxyfile b/docs/mcss-Doxyfile
index a260c6f97..b120aa329 100644
--- a/docs/mcss-Doxyfile
+++ b/docs/mcss-Doxyfile
@@ -2,7 +2,7 @@
 GENERATE_HTML           = NO
 GENERATE_XML            = YES
 XML_PROGRAMLISTING      = NO
-HTML_OUTPUT             = ../ModularSensorsDoxygen/m.css
+HTML_OUTPUT             = ../ModularSensors_Doxygen/m.css
 SHOW_INCLUDE_FILES = YES
 WARN_LOGFILE           = mcssDoxygenOutput.log
 PROJECT_REPOSITORY = https://github.com/EnviroDIY/ModularSensors
@@ -18,4 +18,8 @@ ALIASES += \
     "m_keyword{3}=@xmlonly<mcss:search xmlns:mcss=\"http://mcss.mosra.cz/doxygen/\" mcss:keyword=\"\1\" mcss:title=\"\2\" mcss:suffix-length=\"\3\" />@endxmlonly" \
     "m_enum_values_as_keywords=@xmlonly<mcss:search xmlns:mcss=\"http://mcss.mosra.cz/doxygen/\" mcss:enum-values-as-keywords=\"true\" />@endxmlonly" \
     "m_since{2}=@since @m_class{m-label m-success m-flat} @ref changelog-\1-\2 \"since v\1.\2\"" \
-    "m_deprecated_since{3}=@since deprecated in v\1.\2.\3 @deprecated"
\ No newline at end of file
+    "m_deprecated_since{3}=@since deprecated in v\1.\2.\3 @deprecated"
+
+HAVE_DOT = NO
+DOT_FONTNAME = Source Sans Pro
+DOT_FONTSIZE = 16

From 1144626d9c99807e16c36ecf7d2db7839c98ddc9 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 14:03:36 -0400
Subject: [PATCH 10/24] Add example dependency file

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .github/workflows/verify_library_structure.yaml | 2 +-
 examples/example_dependencies.json              | 5 +++++
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/verify_library_structure.yaml b/.github/workflows/verify_library_structure.yaml
index bf9958771..9c72b21cf 100644
--- a/.github/workflows/verify_library_structure.yaml
+++ b/.github/workflows/verify_library_structure.yaml
@@ -13,5 +13,5 @@ jobs:
     if: ${{ ! contains(github.event.head_commit.message, 'ci skip') }}
     uses: EnviroDIY/workflows/.github/workflows/verify_library_structure.yaml@main
     with:
-      library-manager: 'update'
+      library-manager: 'submit'
       library-compliance: 'strict'
diff --git a/examples/example_dependencies.json b/examples/example_dependencies.json
index 787d94b4d..d547bf4f4 100644
--- a/examples/example_dependencies.json
+++ b/examples/example_dependencies.json
@@ -21,6 +21,11 @@
     {
       "name": "SoftwareSerial_ExternalInts",
       "version": "https://github.com/EnviroDIY/SoftwareSerial_ExternalInts.git"
+    },
+    {
+      "name": "SDI-12_ExtInts",
+      "owner": "envirodiy",
+      "version": "https://github.com/EnviroDIY/Arduino-SDI-12#ExtInts"
     }
   ]
 }

From 477192b702f90973ccb35d5f56e46d9983f680f5 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 14:15:45 -0400
Subject: [PATCH 11/24] Fix example env names

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .github/workflows/build_examples.yaml         | 2 +-
 continuous_integration/generate_job_matrix.py | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_examples.yaml b/.github/workflows/build_examples.yaml
index ec772ba06..b7432716c 100644
--- a/.github/workflows/build_examples.yaml
+++ b/.github/workflows/build_examples.yaml
@@ -13,5 +13,5 @@ jobs:
     if: ${{ ! contains(github.event.head_commit.message, 'ci skip') }}
     uses: EnviroDIY/workflows/.github/workflows/build_examples.yaml@main
     with:
-      boards_to_build: 'mayfly,megaatmega2560,zeroUSB,adafruit_feather_m0'
+      boards_to_build: 'mayfly,mega,zero,feather_m0'
     secrets: inherit
diff --git a/continuous_integration/generate_job_matrix.py b/continuous_integration/generate_job_matrix.py
index b8c12ebde..f2cd322d6 100644
--- a/continuous_integration/generate_job_matrix.py
+++ b/continuous_integration/generate_job_matrix.py
@@ -28,6 +28,7 @@
 workspace_path = os.path.abspath(os.path.realpath(workspace_dir))
 print(f"Workspace Path: {workspace_path}")
 
+# %%
 # The examples directory
 examples_dir = "./examples/"
 examples_path = os.path.join(workspace_dir, examples_dir)
@@ -652,7 +653,7 @@ def extend_pio_config(added_envs):
 
 # %%
 # Tack on a few more extra build configurations for the software serial libraries
-for pio_env in ["Mayfly"]:
+for pio_env in ["mayfly"]:
     arduino_serial_commands = [
         start_job_commands,
         # 'echo "## [Extra Serials on {} with the Arduino CLI](https://github.com/EnviroDIY/ModularSensors/runs/$ACTION_RUN_ID?check_suite_focus=true#step:10:1)" >> $GITHUB_STEP_SUMMARY'.format(

From 34ef181010d34ef6cbe82dfb2432d41ac6614993 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Thu, 15 Aug 2024 14:18:24 -0400
Subject: [PATCH 12/24] revert build_examples.yaml

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .github/workflows/build_examples.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_examples.yaml b/.github/workflows/build_examples.yaml
index b7432716c..ec772ba06 100644
--- a/.github/workflows/build_examples.yaml
+++ b/.github/workflows/build_examples.yaml
@@ -13,5 +13,5 @@ jobs:
     if: ${{ ! contains(github.event.head_commit.message, 'ci skip') }}
     uses: EnviroDIY/workflows/.github/workflows/build_examples.yaml@main
     with:
-      boards_to_build: 'mayfly,mega,zero,feather_m0'
+      boards_to_build: 'mayfly,megaatmega2560,zeroUSB,adafruit_feather_m0'
     secrets: inherit

From 746c2ef657c88b18ed70a85cb02da19a12a128ed Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Fri, 23 Aug 2024 14:14:14 -0400
Subject: [PATCH 13/24] Fix extra flags evn name

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 continuous_integration/platformio_extra_flags.ini | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/continuous_integration/platformio_extra_flags.ini b/continuous_integration/platformio_extra_flags.ini
index 2215cf110..e623e5d8a 100644
--- a/continuous_integration/platformio_extra_flags.ini
+++ b/continuous_integration/platformio_extra_flags.ini
@@ -9,7 +9,7 @@
 ; http://docs.platformio.org/page/projectconf.html
 
 [env:software_wire]
-extends = env:Mayfly
+extends = env:mayfly
 build_flags =
     -D SDI12_EXTERNAL_PCINT
     -D MS_PALEOTERRA_SOFTWAREWIRE
@@ -18,19 +18,19 @@ lib_deps =
 	https://github.com/Testato/SoftwareWire.git#v1.5.1
 
 [env:ads1015]
-extends = env:Mayfly
+extends = env:mayfly
 build_flags =
     -D SDI12_EXTERNAL_PCINT
     -D MS_USE_ADS1015
 
 [env:sdi12_non_concurrent]
-extends = env:Mayfly
+extends = env:mayfly
 build_flags =
     -D SDI12_EXTERNAL_PCINT
 	-D MS_SDI12_NON_CONCURRENT
 
 [env:AltSoftSerial]
-extends = env:Mayfly
+extends = env:mayfly
 build_flags =
     -D SDI12_EXTERNAL_PCINT
     -D BUILD_TEST_ALTSOFTSERIAL
@@ -38,7 +38,7 @@ lib_deps =
 	https://github.com/PaulStoffregen/AltSoftSerial.git
 
 [env:NeoSWSerial]
-extends = env:Mayfly
+extends = env:mayfly
 build_flags =
     -D SDI12_EXTERNAL_PCINT
     -D NEOSWSERIAL_EXTERNAL_PCINT
@@ -47,7 +47,7 @@ lib_deps =
 	https://github.com/SRGDamia1/NeoSWSerial.git
 
 [env:SoftwareSerial]
-extends = env:Mayfly
+extends = env:mayfly
 build_flags =
     -D SDI12_EXTERNAL_PCINT
     -D BUILD_TEST_SOFTSERIAL

From 9b684b4a7e3a35f592696e99c64e0765877db1cc Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Fri, 23 Aug 2024 14:19:38 -0400
Subject: [PATCH 14/24] Update changelog

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 ChangeLog.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/ChangeLog.md b/ChangeLog.md
index 02115b910..fc8f7d2ec 100644
--- a/ChangeLog.md
+++ b/ChangeLog.md
@@ -12,6 +12,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 ### Changed
 
+- Switched to reusable workflows for CI
+
 ### Added
 
 ### Removed

From e34e87b471632cac11fd244ced03fc123546a99b Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Fri, 23 Aug 2024 17:09:58 -0400
Subject: [PATCH 15/24] Watch-dog and sleep changes based on sleepy dog

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/LoggerBase.cpp             | 74 +++++++++++++++++++++-------------
 src/LoggerBase.h               | 72 +++++++++++++++++++++++++++++++--
 src/WatchDogs/WatchDogAVR.cpp  | 31 ++++++++------
 src/WatchDogs/WatchDogSAMD.cpp | 18 ++++-----
 4 files changed, 143 insertions(+), 52 deletions(-)

diff --git a/src/LoggerBase.cpp b/src/LoggerBase.cpp
index cfe4db7bc..6da0472a3 100644
--- a/src/LoggerBase.cpp
+++ b/src/LoggerBase.cpp
@@ -36,6 +36,7 @@ volatile bool Logger::isTestingNow = false;
 volatile bool Logger::startTesting = false;
 
 // Initialize the RTC for the SAMD boards using build in RTC
+// Needed for static instances
 #if not defined(MS_SAMD_DS3231) && defined(ARDUINO_ARCH_SAMD)
 RTCZero Logger::zero_sleep_rtc;
 #endif
@@ -56,10 +57,6 @@ Logger::Logger(const char* loggerID, uint16_t loggingIntervalMinutes,
     isTestingNow = false;
     startTesting = false;
 
-    // Set the initial pin values
-    // NOTE: Only setting values here, not the pin mode.
-    // The pin mode can only be set at run time, not here at compile time.
-
     // Clear arrays
     for (uint8_t i = 0; i < MAX_NUMBER_SENDERS; i++) {
         dataPublishers[i] = nullptr;
@@ -428,7 +425,6 @@ int8_t Logger::getTZOffset(void) {
 
 // This gets the current epoch time (unix time, ie, the number of seconds
 // from January 1, 1970 00:00:00 UTC) and corrects it to the specified time zone
-
 uint32_t Logger::getNowEpoch(void) {
     // Depreciated in 0.33.0, left in for compatiblity
     return getNowLocalEpoch();
@@ -523,14 +519,14 @@ bool Logger::setRTClock(uint32_t UTCEpochSeconds) {
     // the user
     uint32_t set_logTZ = UTCEpochSeconds +
         ((uint32_t)getLoggerTimeZone()) * 3600;
-    MS_DBG(F("    Time for Logger supplied by NIST:"), set_logTZ, F("->"),
+    MS_DBG(F("    Time for Logger supplied as input:"), set_logTZ, F("->"),
            formatDateTime_ISO8601(set_logTZ));
 
     // Check the current RTC time
     uint32_t cur_logTZ = getNowLocalEpoch();
     MS_DBG(F("    Current Time on RTC:"), cur_logTZ, F("->"),
            formatDateTime_ISO8601(cur_logTZ));
-    MS_DBG(F("    Offset between NIST and RTC:"), abs(set_logTZ - cur_logTZ));
+    MS_DBG(F("    Offset between input and RTC:"), abs(set_logTZ - cur_logTZ));
 
     // NOTE:  Because we take the time to do some UTC/Local conversions and
     // print stuff out, the clock might end up being set up to a few
@@ -762,29 +758,44 @@ void Logger::systemSleep(void) {
     // Disable the watch-dog timer
     watchDogTimer.disableWatchDog();
 
-    // Sleep code from ArduinoLowPowerClass::sleep()
-    bool restoreUSBDevice = false;
-    // if (SERIAL_PORT_USBVIRTUAL)
-    // {
-    //     USBDevice.standby();
-    // }
-    // else
-    // {
 #ifndef USE_TINYUSB
+    // Detach the USB, iff not using TinyUSB
+    MS_DEEP_DBG(F("USBDevice.detach"));
     USBDevice.detach();
+    MS_DEEP_DBG(F("USBDevice.end"));
+    USBDevice.end();
+    USBDevice.standby();
 #endif
-    restoreUSBDevice = true;
-    // }
+
+#if defined(__SAMD51__)
+    // PM_SLEEPCFG_SLEEPMODE_BACKUP = 0x4
+    PM->SLEEPCFG.bit.SLEEPMODE = 0x4;
+    while (PM->SLEEPCFG.bit.SLEEPMODE != 0x4)
+        ;  // Wait for it to take
+#else
     // Disable systick interrupt:  See
     // https://www.avrfreaks.net/forum/samd21-samd21e16b-sporadically-locks-and-does-not-wake-standby-sleep-mode
+    // Due to a hardware bug on the SAMD21, the SysTick interrupts become active
+    // before the flash has powered up from sleep, causing a hard fault. To
+    // prevent this the SysTick interrupts are disabled before entering sleep
+    // mode.
     SysTick->CTRL &= ~SysTick_CTRL_TICKINT_Msk;
     // Now go to sleep
     SCB->SCR |= SCB_SCR_SLEEPDEEP_Msk;
-    __DSB();
-    __WFI();
+#endif
+
+    __DSB();  // Data sync to ensure outgoing memory accesses complete
+    __WFI();  // Wait for interrupt (places device in sleep mode)
 
 #elif defined ARDUINO_ARCH_AVR
 
+// Disable USB if it exists
+#ifdef USBCON
+    USBCON |= _BV(FRZCLK);  // freeze USB clock
+    PLLCSR &= ~_BV(PLLE);   // turn off USB PLL
+    USBCON &= ~_BV(USBE);   // disable USB
+#endif
+
     // Set the sleep mode
     // In the avr/sleep.h file, the call names of these 5 sleep modes are:
     // SLEEP_MODE_IDLE         -the least power savings
@@ -839,18 +850,16 @@ void Logger::systemSleep(void) {
     // -- The portion below this happens on wake up, after any wake ISR's --
 
 #if defined ARDUINO_ARCH_SAMD
+#if (SAMD20_SERIES || SAMD21_SERIES)
     // Reattach the USB after waking
     // Enable systick interrupt
     SysTick->CTRL |= SysTick_CTRL_TICKINT_Msk;
-    if (restoreUSBDevice) {
+#endif
+    // Reattach the USB
 #ifndef USE_TINYUSB
-        USBDevice.attach();
+    USBDevice.init();
+    USBDevice.attach();
 #endif
-        uint32_t startTimer = millis();
-        while (!SERIAL_PORT_USBVIRTUAL && ((millis() - startTimer) < 1000L)) {
-            // wait
-        }
-    }
 #endif
 
 #if defined ARDUINO_ARCH_AVR
@@ -1323,8 +1332,19 @@ void Logger::begin() {
     MS_DBG(F("Logger is set to record at"), _loggingIntervalMinutes,
            F("minute intervals."));
 
+#if defined(ARDUINO_ARCH_SAMD)
+    MS_DBG(F("Disabling the USB on stnadby to lower sleep current"));
+    USB->DEVICE.CTRLA.bit.ENABLE = 0;  // Disable the USB peripheral
+    while (USB->DEVICE.SYNCBUSY.bit.ENABLE)
+        ;                                // Wait for synchronization
+    USB->DEVICE.CTRLA.bit.RUNSTDBY = 0;  // Deactivate run on standby
+    USB->DEVICE.CTRLA.bit.ENABLE   = 1;  // Enable the USB peripheral
+    while (USB->DEVICE.SYNCBUSY.bit.ENABLE)
+        ;  // Wait for synchronization
+#endif
+
     MS_DBG(F(
-        "Setting up a watch-dog timer to fire after 5 minutes of inactivity"));
+        "Setting up a watch-dog timer to fire after 15 minutes of inactivity"));
     watchDogTimer.setupWatchDog((uint32_t)(5 * 60 * 3));
     // Enable the watchdog
     watchDogTimer.enableWatchDog();
diff --git a/src/LoggerBase.h b/src/LoggerBase.h
index 57556b40e..295190924 100644
--- a/src/LoggerBase.h
+++ b/src/LoggerBase.h
@@ -679,9 +679,6 @@ class Logger {
      */
     static int8_t getTZOffset(void);
 
-// This gets the current epoch time (unix time, ie, the number of seconds
-// from January 1, 1970 00:00:00 UTC) and corrects it for the specified time
-// zone
 #if (defined(ARDUINO_ARCH_SAMD) || defined(ARDUINO_SAMD_ZERO)) && \
     not defined(MS_SAMD_DS3231)
     /**
@@ -853,6 +850,75 @@ class Logger {
      * @anchor logger_sleep
      * @name Clock and Timezones
      * Public Functions for sleeping the logger
+     *
+     * # AVR Sleep modes
+     *
+     * In the avr/sleep.h file, the call names of these 5 sleep modes are:
+     * SLEEP_MODE_IDLE         - the least power savings
+     * SLEEP_MODE_ADC
+     * SLEEP_MODE_PWR_SAVE
+     * SLEEP_MODE_STANDBY
+     * SLEEP_MODE_PWR_DOWN     - the most power savings
+     *
+     * # SAMD21 Sleep Modes
+     *
+     * > The SAM D21/DA1 have two software-selectable sleep modes, Idle and
+     * > Stand-by.
+     * > In Idle mode, the CPU is stopped while all other functions can be kept
+     * > running.
+     * > In Stand-by mode, all clocks and functions are stopped, expect those
+     * > selected to continue running.
+     * > The device supports SleepWalking.
+     * > This feature allows the peripheral to wake up from sleep based on
+     * > predefined conditions, and thus allows the CPU to wake up only when
+     * > needed, e.g., when a threshold is crossed or a result is ready.
+     * > The Event System supports synchronous and asynchronous events, allowing
+     * > peripherals to receive, react to and send events even in Stand-by mode.
+     *
+     * # SAMD51 Sleep Modes
+     *
+     * > The device can be set in a sleep mode. In sleep mode, the CPU is
+     * > stopped and the peripherals are either active or idle, according to the
+     * > sleep mode depth:
+     * >
+     * >  - Idle sleep mode:
+     * >    - The CPU is stopped.
+     * >    - Synchronous clocks are stopped except when requested.
+     * >    - The logic is retained.
+     * >  - Standby sleep mode:
+     * >    - The CPU is stopped as well as the peripherals.
+     * >    - The logic is retained, and power domain gating can be used to
+     * > fully or partially turn off the PDSYSRAM power domain.
+     * >  - Hibernate sleep mode:
+     * >    - PDCORESW power domain is turned OFF.
+     * >    - The backup power domain is kept powered to allow few features to
+     * > run (RTC, 32KHz clock sources, and wake-up from external pins).
+     * >    - The PDSYSRAM power domain can be retained according to software
+     * > configuration.
+     * >  - Backup sleep mode:
+     * >    - Only the backup domain is kept powered to allow few features to
+     * > run (RTC, 32KHz clock sources, and wake-up from external pins).
+     * >    - The PDBKUPRAM power domain can be retained according to software
+     * > configuration.
+     * >  - Off sleep mode:
+     * >    - The entire device is powered off.
+     *
+     * ## Bit Settings
+     * | Value |    Name   |                 Definition                 |
+     * |:-----:|:---------:|:------------------------------------------:|
+     * | 0x0   | Reserved  | -                                          |
+     * | 0x1   | Reserved  | -                                          |
+     * | 0x2   | IDLE      | CPU, AHBx, and APBx clocks are OFF         |
+     * | 0x3   | Reserved  | Reserved                                   |
+     * | 0x4   | STANDBY   | All Clocks are OFF                         |
+     * | 0x5   | HIBERNATE | Backup domain is ON as well as some PDRAMs |
+     * | 0x6   | BACKUP    | Only Backup domain is powered ON           |
+     * | 0x7   | OFF       | All power domains are powered OFF          |
+     *
+     * @note For the SAMD51, hibernate, backup, and off modes cause a full
+     * system reset on wake. Because we don't want to fully reset the device
+     * (and go back to the setup) on wake, the lowest power mode we can use is
+     * standby.
      */
     /**@{*/
     // ===================================================================== //
diff --git a/src/WatchDogs/WatchDogAVR.cpp b/src/WatchDogs/WatchDogAVR.cpp
index b3614b88f..ade6956a6 100644
--- a/src/WatchDogs/WatchDogAVR.cpp
+++ b/src/WatchDogs/WatchDogAVR.cpp
@@ -39,26 +39,28 @@ void extendedWatchDogAVR::setupWatchDog(uint32_t resetTime_s) {
 void extendedWatchDogAVR::enableWatchDog() {
     MS_DBG(F("Enabling watch dog..."));
 
-    cli();  // disable interrupts
-
-    MCUSR = 0;  // reset status register flags
+    // The next section is timing critical so interrupts are disabled.
+    cli();
+    // First clear any previous watchdog reset.
+    MCUSR &= ~(1 << WDRF);
 
     // Put timer in interrupt-only mode:
     // WDTCSR - Watchdog Timer Control Register
+
+    // Set WDCE and WDE to enable changes.
+    // If changes aren't enabled, we cannot change the prescaler
     WDTCSR |= 0b00011000;  // Set Bit 4 – WDCE: Watchdog Change Enable
                            // Set Bit 3 – WDE: Watchdog System Reset Enable
     // bitwise OR assignment (leaves other bits unchanged)
-    // Need to set the change and reset enables before changing the prescaler
 
-    WDTCSR = 0b01100001;  // Set Bit 6 – WDIE: Watchdog Interrupt Enable
-                          // Unset Bit 4 – WDCE: Watchdog Change Enable
-                          // Unset Bit 3 – WDE: Watchdog System Reset Enable
-                          // Set Bit 5 - WDP[3] and Bit 0 – WDP[0]:
-    // Watchdog Timer Prescalers 3 and 0 - 1024K cycles = 8.0s
-    // bitwise OR assignment (leaves other bits unchanged)
-
-    sei();  // re-enable interrupts
-    // wdt_reset();  // this is not needed...timer starts without it
+    // Now can set the full register including the prescaler
+    WDTCSR = 0b01100001;
+    // Bit 7: WDIF (Watchdog Interrupt Flag) - 0 (Read only)
+    // Bit 6: WDIE (Watchdog Interrupt Enable) - 1 (Enabled)
+    // Bit 5: WDP3 (Watchdog Timer Prescaler) - see delay interval patterns
+    // Bit 4: WDCE (Watchdog Change Enable) - 0 (disable further changes)
+    // Bit 3: WDE  (Watchdog System Reset Enable) - 0 (Clear?)
+    // Bits 2:0 Watchdog timer prescaler [WDP2:0] - see delay interval patterns
 
     // delay interval patterns:
     //  16 ms:     0bxx0xx000
@@ -68,6 +70,9 @@ void extendedWatchDogAVR::enableWatchDog() {
     //  4 seconds: 0bxx1xx000
     //  8 seconds: 0bxx1xx001
 
+    sei();  // re-enable interrupts
+    // wdt_reset();  // this is not needed...timer starts without it
+
     extendedWatchDogAVR::_barksUntilReset = _resetTime_s / 8;
     MS_DBG(F("The watch dog is enabled in interrupt-only mode."));
     MS_DBG(F("The interrupt will fire"), extendedWatchDogAVR::_barksUntilReset,
diff --git a/src/WatchDogs/WatchDogSAMD.cpp b/src/WatchDogs/WatchDogSAMD.cpp
index ff63e78bd..7163ac823 100644
--- a/src/WatchDogs/WatchDogSAMD.cpp
+++ b/src/WatchDogs/WatchDogSAMD.cpp
@@ -33,12 +33,6 @@ void extendedWatchDogSAMD::setupWatchDog(uint32_t resetTime_s) {
            extendedWatchDogSAMD::_barksUntilReset,
            F("times before the reset."));
 
-    // Enable WDT early-warning interrupt
-    NVIC_DisableIRQ(WDT_IRQn);
-    NVIC_ClearPendingIRQ(WDT_IRQn);
-    NVIC_SetPriority(WDT_IRQn, 1);  // Priority behind RTC!
-    NVIC_EnableIRQ(WDT_IRQn);
-
 // Disable watchdog for config
 #if defined(__SAMD51__)
     WDT->CTRLA.reg = 0;
@@ -97,27 +91,33 @@ void extendedWatchDogSAMD::setupWatchDog(uint32_t resetTime_s) {
 
 #endif
 
+    // Enable WDT early-warning interrupt
+    NVIC_DisableIRQ(WDT_IRQn);
+    NVIC_ClearPendingIRQ(WDT_IRQn);
+    NVIC_SetPriority(WDT_IRQn, 1);  // Priority behind RTC!
+    NVIC_EnableIRQ(WDT_IRQn);
+
     // Set up the watch dog control parameters
 #if defined(__SAMD51__)
     WDT->CTRLA.bit.WEN = 0;  // Disable window mode
 #else
     WDT->CTRL.bit.WEN      = 0;  // Disable window mode
 #endif
-    waitForWDTBitSync();  // ?? Needed here ??
+    waitForWDTBitSync();
 #if defined(__SAMD51__)
     WDT->CTRLA.bit.ALWAYSON = 0;  // NOT always on!
 #else
     WDT->CTRL.bit.ALWAYSON = 0;  // NOT always on!
 #endif
 
-    waitForWDTBitSync();  // ?? Needed here ??
+    waitForWDTBitSync();
 
     WDT->CONFIG.bit.PER =
         0xB;  // Period = 16384 clockcycles @ 1024hz = 16 seconds
     WDT->EWCTRL.bit.EWOFFSET = 0xA;  // Early Warning Interrupt Time Offset 0xA
                                      // = 8192 clockcycles @ 1024hz = 8 seconds
     WDT->INTENSET.bit.EW = 1;        // Enable early warning interrupt
-    waitForWDTBitSync();             // ?? Needed here ??
+    waitForWDTBitSync();
 
     /*In normal mode, the Early Warning interrupt generation is defined by the
     Early Warning Offset in the Early Warning Control register

From f36e83b25dc764411f6cbacde3de981f5dd3ac50 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Fri, 23 Aug 2024 17:10:44 -0400
Subject: [PATCH 16/24] Move board definition, fix define for Feather M0

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/sensors/ProcessorStats.cpp | 107 +++++----------------------------
 src/sensors/ProcessorStats.h   |  84 ++++++++++++++++++++++++++
 2 files changed, 99 insertions(+), 92 deletions(-)

diff --git a/src/sensors/ProcessorStats.cpp b/src/sensors/ProcessorStats.cpp
index 2a964fadd..eb149027d 100644
--- a/src/sensors/ProcessorStats.cpp
+++ b/src/sensors/ProcessorStats.cpp
@@ -10,99 +10,17 @@
 
 #include "ProcessorStats.h"
 
-// EnviroDIY boards
-#if defined(ARDUINO_AVR_ENVIRODIY_MAYFLY)
-/// @brief Pretty text for the board name derived from the board's compiler
-/// define.
-#define BOARD "EnviroDIY Mayfly"
-
-// Sodaq boards
-#elif defined(ARDUINO_SODAQ_EXPLORER)
-#define BOARD "SODAQ ExpLoRer"
-#elif defined(ARDUINO_SODAQ_AUTONOMO)
-#define BOARD "SODAQ Autonomo"
-#elif defined(ARDUINO_SODAQ_ONE_BETA)
-#define BOARD "SODAQ ONE Beta"
-#elif defined(ARDUINO_SODAQ_ONE)
-#define BOARD "SODAQ ONE"
-#elif defined(ARDUINO_AVR_SODAQ_MBILI)
-#define BOARD "SODAQ Mbili"
-#elif defined(ARDUINO_AVR_SODAQ_NDOGO)
-#define BOARD "SODAQ Ndogo"
-#elif defined(ARDUINO_AVR_SODAQ_TATU)
-#define BOARD "SODAQ Tatu"
-#elif defined(ARDUINO_AVR_SODAQ_MOJA)
-#define BOARD "SODAQ Moja"
-
-// Adafruit boards
-#elif defined(ARDUINO_AVR_FEATHER32U4)
-#define BOARD "Feather 32u4"
-#elif defined(ARDUINO_SAMD_FEATHER_M0)
-#define BOARD "Feather M0"
-#elif defined(ARDUINO_SAMD_FEATHER_M0_EXPRESS)
-#define BOARD "Feather M0 Express"
-
-// Arduino boards
-#elif defined(ARDUINO_AVR_ADK)
-#define BOARD "Mega Adk"
-#elif defined(ARDUINO_AVR_BT)  // Bluetooth
-#define BOARD "Bt"
-#elif defined(ARDUINO_AVR_DUEMILANOVE)
-#define BOARD "Duemilanove"
-#elif defined(ARDUINO_AVR_ESPLORA)
-#define BOARD "Esplora"
-#elif defined(ARDUINO_AVR_ETHERNET)
-#define BOARD "Ethernet"
-#elif defined(ARDUINO_AVR_FIO)
-#define BOARD "Fio"
-#elif defined(ARDUINO_AVR_GEMMA)
-#define BOARD "Gemma"
-#elif defined(ARDUINO_AVR_LEONARDO)
-#define BOARD "Leonardo"
-#elif defined(ARDUINO_AVR_LILYPAD)
-#define BOARD "Lilypad"
-#elif defined(ARDUINO_AVR_LILYPAD_USB)
-#define BOARD "Lilypad Usb"
-#elif defined(ARDUINO_AVR_MEGA)
-#define BOARD "Mega"
-#elif defined(ARDUINO_AVR_MEGA2560)
-#define BOARD "Mega 2560"
-#elif defined(ARDUINO_AVR_MICRO)
-#define BOARD "Micro"
-#elif defined(ARDUINO_AVR_MINI)
-#define BOARD "Mini"
-#elif defined(ARDUINO_AVR_NANO)
-#define BOARD "Nano"
-#elif defined(ARDUINO_AVR_NG)
-#define BOARD "NG"
-#elif defined(ARDUINO_AVR_PRO)
-#define BOARD "Pro"
-#elif defined(ARDUINO_AVR_ROBOT_CONTROL)
-#define BOARD "Robot Ctrl"
-#elif defined(ARDUINO_AVR_ROBOT_MOTOR)
-#define BOARD "Robot Motor"
-#elif defined(ARDUINO_AVR_UNO)
-#define BOARD "Uno"
-#elif defined(ARDUINO_AVR_YUN)
-#define BOARD "Yun"
-#elif defined(ARDUINO_SAMD_ZERO)
-#define BOARD "Zero"
-
-#else
-#define BOARD "Unknown"
-#endif
-
-
 // Need to know the Mayfly version because the battery resistor depends on it
 ProcessorStats::ProcessorStats(const char* version)
-    : Sensor(BOARD, PROCESSOR_NUM_VARIABLES, PROCESSOR_WARM_UP_TIME_MS,
+    : Sensor(LOGGER_BOARD, PROCESSOR_NUM_VARIABLES, PROCESSOR_WARM_UP_TIME_MS,
              PROCESSOR_STABILIZATION_TIME_MS, PROCESSOR_MEASUREMENT_TIME_MS, -1,
              -1, 1, PROCESSOR_INC_CALC_VARIABLES),
       _version(version) {
 #if defined(ARDUINO_AVR_ENVIRODIY_MAYFLY) || defined(ARDUINO_AVR_SODAQ_MBILI)
     _batteryPin = A6;
 #elif defined(ARDUINO_AVR_FEATHER32U4) || defined(ARDUINO_SAMD_FEATHER_M0) || \
-    defined(ARDUINO_SAMD_FEATHER_M0_EXPRESS)
+    defined(SAMD_FEATHER_M0) || defined(ARDUINO_SAMD_FEATHER_M0_EXPRESS) ||   \
+    defined(SAMD_FEATHER_M0_EXPRESS)
     _batteryPin        = 9;
 #elif defined(ARDUINO_SODAQ_ONE) || defined(ARDUINO_SODAQ_ONE_BETA) || \
     defined(ARDUINO_AVR_SODAQ_NDOGO)
@@ -121,7 +39,7 @@ ProcessorStats::~ProcessorStats() {}
 
 
 String ProcessorStats::getSensorLocation(void) {
-    return BOARD;
+    return LOGGER_BOARD;
 }
 
 
@@ -140,6 +58,7 @@ bool ProcessorStats::addSingleMeasurementResult(void) {
     MS_DBG(F("Getting battery voltage from pin"), _batteryPin);
 
     float sensorValue_battery = -9999;
+    analogRead(_batteryPin);  // priming reading
 
 #if defined(ARDUINO_AVR_ENVIRODIY_MAYFLY)
     if (strcmp(_version, "v0.3") == 0 || strcmp(_version, "v0.4") == 0) {
@@ -166,6 +85,7 @@ bool ProcessorStats::addSingleMeasurementResult(void) {
 
 #elif defined(ARDUINO_AVR_FEATHER32U4) || defined(ARDUINO_SAMD_FEATHER_M0) || \
     defined(ARDUINO_SAMD_FEATHER_M0_EXPRESS)
+    analogRead(_batteryPin);  // priming reading
     float measuredvbat = analogRead(_batteryPin);
     measuredvbat *= 2;     // we divided by 2, so multiply back
     measuredvbat *= 3.3;   // Multiply by 3.3V, our reference voltage
@@ -175,22 +95,25 @@ bool ProcessorStats::addSingleMeasurementResult(void) {
 #elif defined(ARDUINO_SODAQ_ONE) || defined(ARDUINO_SODAQ_ONE_BETA)
     if (strcmp(_version, "v0.1") == 0) {
         // Get the battery voltage
+        analogRead(_batteryPin);  // priming reading
         float rawBattery = analogRead(_batteryPin);
         MS_DBG(F("Raw battery pin reading in bits:"), rawBattery);
         sensorValue_battery = (3.3 / 1023.) * 2 * rawBattery;
         MS_DBG(F("Battery in Volts:"), sensorValue_battery);
     }
-    if (strcmp(_version, "v0.2") == 0) {
-        // Get the battery voltage
-        float rawBattery = analogRead(_batteryPin);
-        MS_DBG(F("Raw battery pin reading in bits:"), rawBattery);
-        sensorValue_battery = (3.3 / 1023.) * 1.47 * rawBattery;
-        MS_DBG(F("Battery in Volts:"), sensorValue_battery);
+    if (strcmp(_version, "v0.2") == 0)
+        analogRead(_batteryPin);  // priming reading{
+    // Get the battery voltage
+    float rawBattery = analogRead(_batteryPin);
+    MS_DBG(F("Raw battery pin reading in bits:"), rawBattery);
+    sensorValue_battery = (3.3 / 1023.) * 1.47 * rawBattery;
+    MS_DBG(F("Battery in Volts:"), sensorValue_battery);
     }
 
 #elif defined(ARDUINO_AVR_SODAQ_NDOGO) || defined(ARDUINO_SODAQ_AUTONOMO) || \
     defined(ARDUINO_AVR_SODAQ_MBILI)
     // Get the battery voltage
+    analogRead(_batteryPin);  // priming reading
     float rawBattery = analogRead(_batteryPin);
     MS_DBG(F("Raw battery pin reading in bits:"), rawBattery);
     sensorValue_battery = (3.3 / 1023.) * 1.47 * rawBattery;
diff --git a/src/sensors/ProcessorStats.h b/src/sensors/ProcessorStats.h
index 34b4d95ff..ec9eb68d0 100644
--- a/src/sensors/ProcessorStats.h
+++ b/src/sensors/ProcessorStats.h
@@ -192,6 +192,90 @@
 /**@}*/
 
 
+// EnviroDIY boards
+#if defined(ARDUINO_AVR_ENVIRODIY_MAYFLY)
+/// @brief Pretty text for the board name derived from the board's compiler
+/// define.
+#define LOGGER_BOARD "EnviroDIY Mayfly"
+
+// Sodaq boards
+#elif defined(ARDUINO_SODAQ_EXPLORER)
+#define LOGGER_BOARD "SODAQ ExpLoRer"
+#elif defined(ARDUINO_SODAQ_AUTONOMO)
+#define LOGGER_BOARD "SODAQ Autonomo"
+#elif defined(ARDUINO_SODAQ_ONE_BETA)
+#define LOGGER_BOARD "SODAQ ONE Beta"
+#elif defined(ARDUINO_SODAQ_ONE)
+#define LOGGER_BOARD "SODAQ ONE"
+#elif defined(ARDUINO_AVR_SODAQ_MBILI)
+#define LOGGER_BOARD "SODAQ Mbili"
+#elif defined(ARDUINO_AVR_SODAQ_NDOGO)
+#define LOGGER_BOARD "SODAQ Ndogo"
+#elif defined(ARDUINO_AVR_SODAQ_TATU)
+#define LOGGER_BOARD "SODAQ Tatu"
+#elif defined(ARDUINO_AVR_SODAQ_MOJA)
+#define LOGGER_BOARD "SODAQ Moja"
+
+// Adafruit boards
+#elif defined(ARDUINO_AVR_FEATHER32U4)
+#define LOGGER_BOARD "Feather 32u4"
+#elif defined(ARDUINO_SAMD_FEATHER_M0_EXPRESS) || \
+    defined(ADAFRUIT_FEATHER_M0_EXPRESS)
+#define LOGGER_BOARD "Feather M0 Express"
+#elif defined(ARDUINO_SAMD_FEATHER_M0) || defined(ADAFRUIT_FEATHER_M0)
+#define LOGGER_BOARD "Feather M0"
+
+// Arduino boards
+#elif defined(ARDUINO_AVR_ADK)
+#define LOGGER_BOARD "Mega Adk"
+#elif defined(ARDUINO_AVR_BT)  // Bluetooth
+#define LOGGER_BOARD "Bt"
+#elif defined(ARDUINO_AVR_DUEMILANOVE)
+#define LOGGER_BOARD "Duemilanove"
+#elif defined(ARDUINO_AVR_ESPLORA)
+#define LOGGER_BOARD "Esplora"
+#elif defined(ARDUINO_AVR_ETHERNET)
+#define LOGGER_BOARD "Ethernet"
+#elif defined(ARDUINO_AVR_FIO)
+#define LOGGER_BOARD "Fio"
+#elif defined(ARDUINO_AVR_GEMMA)
+#define LOGGER_BOARD "Gemma"
+#elif defined(ARDUINO_AVR_LEONARDO)
+#define LOGGER_BOARD "Leonardo"
+#elif defined(ARDUINO_AVR_LILYPAD)
+#define LOGGER_BOARD "Lilypad"
+#elif defined(ARDUINO_AVR_LILYPAD_USB)
+#define LOGGER_BOARD "Lilypad Usb"
+#elif defined(ARDUINO_AVR_MEGA)
+#define LOGGER_BOARD "Mega"
+#elif defined(ARDUINO_AVR_MEGA2560)
+#define LOGGER_BOARD "Mega 2560"
+#elif defined(ARDUINO_AVR_MICRO)
+#define LOGGER_BOARD "Micro"
+#elif defined(ARDUINO_AVR_MINI)
+#define LOGGER_BOARD "Mini"
+#elif defined(ARDUINO_AVR_NANO)
+#define LOGGER_BOARD "Nano"
+#elif defined(ARDUINO_AVR_NG)
+#define LOGGER_BOARD "NG"
+#elif defined(ARDUINO_AVR_PRO)
+#define LOGGER_BOARD "Pro"
+#elif defined(ARDUINO_AVR_ROBOT_CONTROL)
+#define LOGGER_BOARD "Robot Ctrl"
+#elif defined(ARDUINO_AVR_ROBOT_MOTOR)
+#define LOGGER_BOARD "Robot Motor"
+#elif defined(ARDUINO_AVR_UNO)
+#define LOGGER_BOARD "Uno"
+#elif defined(ARDUINO_AVR_YUN)
+#define LOGGER_BOARD "Yun"
+#elif defined(ARDUINO_SAMD_ZERO)
+#define LOGGER_BOARD "Zero"
+
+#else
+#define LOGGER_BOARD "Unknown"
+#endif
+
+
 // The main class for the Processor
 // Only need a sleep and wake since these DON'T use the default of powering
 // up and down

From cdff86720cdc0c485c49a3b61ca75fe5fcd3178f Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Fri, 23 Aug 2024 17:48:01 -0400
Subject: [PATCH 17/24] Made ds3231 default for SAMD21

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/LoggerBase.h | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/src/LoggerBase.h b/src/LoggerBase.h
index 295190924..31902dd30 100644
--- a/src/LoggerBase.h
+++ b/src/LoggerBase.h
@@ -18,6 +18,9 @@
 // Debugging Statement
 // #define MS_LOGGERBASE_DEBUG
 
+// Set default clock for SAMD21 as DS3231 instead of built-in RTC
+#define MS_SAMD_DS3231
+
 #ifdef MS_LOGGERBASE_DEBUG
 #define MS_DEBUGGING_STD "LoggerBase"
 #endif

From b5fdb543eabfe152b694ab90cea249bc4f9f06e7 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Sun, 25 Aug 2024 23:25:56 -0400
Subject: [PATCH 18/24] Save wake pin mode

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/LoggerBase.cpp | 11 +++++++++--
 src/LoggerBase.h   |  9 +++++++++
 2 files changed, 18 insertions(+), 2 deletions(-)

diff --git a/src/LoggerBase.cpp b/src/LoggerBase.cpp
index 6da0472a3..303730ce3 100644
--- a/src/LoggerBase.cpp
+++ b/src/LoggerBase.cpp
@@ -167,7 +167,8 @@ void Logger::setSDCardPins(int8_t SDCardSSPin, int8_t SDCardPowerPin) {
 // Sets up the wake up pin for an RTC interrupt
 // NOTE:  This sets the pin mode but does NOT enable the interrupt!
 void Logger::setRTCWakePin(int8_t mcuWakePin, uint8_t wakePinMode) {
-    _mcuWakePin = mcuWakePin;
+    _mcuWakePin  = mcuWakePin;
+    _wakePinMode = wakePinMode;
     if (_mcuWakePin >= 0) {
         pinMode(_mcuWakePin, wakePinMode);
         MS_DBG(F("Pin"), _mcuWakePin, F("set as RTC wake up pin"));
@@ -687,6 +688,9 @@ void Logger::systemSleep(void) {
         return;
     }
 
+    // Send a message that we're getting ready
+    MS_DBG(F("Preparing processor for  sleep.  ZZzzz..."));
+
 #if defined(MS_SAMD_DS3231) || not defined(ARDUINO_ARCH_SAMD)
 
     // Unfortunately, because of the way the alarm on the DS3231 is set up, it
@@ -703,7 +707,10 @@ void Logger::systemSleep(void) {
     rtc.clearINTStatus();
 
     // Set up a pin to hear clock interrupt and attach the wake ISR to it
-    pinMode(_mcuWakePin, INPUT_PULLUP);
+    MS_DBG(F("Enabling interrupts on pin"), _mcuWakePin);
+    // Set the pin mode, although this shouldn't really need to be re-set here
+    pinMode(_mcuWakePin, _wakePinMode);
+    // attach the interrupt
     enableInterrupt(_mcuWakePin, wakeISR, CHANGE);
 
 #elif defined ARDUINO_ARCH_SAMD
diff --git a/src/LoggerBase.h b/src/LoggerBase.h
index 31902dd30..22463960b 100644
--- a/src/LoggerBase.h
+++ b/src/LoggerBase.h
@@ -413,6 +413,15 @@ class Logger {
      * deep-sleep.
      */
     int8_t _mcuWakePin = -1;
+    /**
+     * @brief The pin mode used for wake up on the clock alert pin.
+     *
+     * Must be either `INPUT` OR `INPUT_PULLUP` with an AVR board.  On a SAM/D
+     * board `INPUT_PULLDOWN` is also an option.  Optional with a default value
+     * of `INPUT_PULLUP`.  The DS3231 has an active low interrupt, so the
+     * pull-up resistors should be enabled.
+     */
+    uint8_t _wakePinMode = INPUT_PULLUP;
     /**
      * @brief Digital pin number on the mcu used to output an alert that the
      * logger is measuring.

From f683dd8b58861e3d884c9fc6a49aeb6f2742433f Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Sun, 25 Aug 2024 23:26:28 -0400
Subject: [PATCH 19/24] Only actualy use Enable Interrupt for AVR. It's just a
 macro re-write for others.

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/ModSensorInterrupts.h | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/ModSensorInterrupts.h b/src/ModSensorInterrupts.h
index cb3650f81..dbb89c7cf 100644
--- a/src/ModSensorInterrupts.h
+++ b/src/ModSensorInterrupts.h
@@ -14,9 +14,7 @@
 #ifndef SRC_MODSENSORINTERRUPTS_H_
 #define SRC_MODSENSORINTERRUPTS_H_
 
-#if defined(__AVR__) || defined(ARDUINO_ARCH_AVR) || defined __SAM3U4E__ ||    \
-    defined __SAM3X8E__ || defined __SAM3X8H__ || defined ARDUINO_SAMD_ZERO || \
-    defined __SAMD21G18A__ || defined __SAMD21J18A__
+#if defined(__AVR__)
 // #define LIBCALL_ENABLEINTERRUPT  // To prevent compiler/linker crashes
 #include <EnableInterrupt.h>  // To handle external and pin change interrupts
 #else

From ea7449ef3ad17aac19bf2141c1dc5997e4b3c510 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Sun, 25 Aug 2024 23:30:32 -0400
Subject: [PATCH 20/24] Re-wrote SAMD clock configs

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/LoggerBase.cpp             | 101 +++++++++++++++--------
 src/WatchDogs/WatchDogSAMD.cpp | 143 ++++++++++++++++++++++++++++-----
 2 files changed, 192 insertions(+), 52 deletions(-)

diff --git a/src/LoggerBase.cpp b/src/LoggerBase.cpp
index 303730ce3..0d4ff60de 100644
--- a/src/LoggerBase.cpp
+++ b/src/LoggerBase.cpp
@@ -713,6 +713,26 @@ void Logger::systemSleep(void) {
     // attach the interrupt
     enableInterrupt(_mcuWakePin, wakeISR, CHANGE);
 
+#if defined ARDUINO_ARCH_SAMD && not defined(__SAMD51__)
+    // Reconfigure the clock after attaching the interrupt
+    // This is needed because the attachInterrupt function will reconfigure the
+    // clock source for the EIC to GCLK0 every time a new interrupt is attached
+    // - and after being detached, reattaching the same interrupt is just like a
+    // new one). We need to switch the EIC source back to our configured GCLK2.
+    Serial.println(F("Re-attaching the EIC to GCLK2"));
+    GCLK->CLKCTRL.reg = GCLK_CLKCTRL_GEN(2) |  // Select generic clock 2
+        GCLK_CLKCTRL_CLKEN |       // Enable the generic clock clontrol
+        GCLK_CLKCTRL_ID(GCM_EIC);  // Feed the GCLK to the EIC
+    while (GCLK->STATUS.bit.SYNCBUSY) {
+        // Wait for synchronization
+    }
+
+    // get the interrupt number associated with the pin
+    EExt_Interrupts in = g_APinDescription[_mcuWakePin].ulExtInt;
+    // Enable wakeup capability on pin in case being used during sleep
+    EIC->WAKEUP.reg |= (1 << in);
+#endif  // defined ARDUINO_ARCH_SAMD && not defined(__SAMD51__)
+
 #elif defined ARDUINO_ARCH_SAMD
 
     // Make sure interrupts are enabled for the clock
@@ -729,22 +749,11 @@ void Logger::systemSleep(void) {
     zero_sleep_rtc.setAlarmSeconds(59);
     zero_sleep_rtc.enableAlarm(zero_sleep_rtc.MATCH_SS);
 
-#endif
-
-    // Send one last message before shutting down serial ports
-    MS_DBG(F("Putting processor to sleep.  ZZzzz..."));
+#endif  // defined(MS_SAMD_DS3231) || not defined(ARDUINO_ARCH_SAMD)
 
-// Wait until the serial ports have finished transmitting
-// This does not clear their buffers, it just waits until they are finished
-// TODO(SRGDamia1):  Make sure can find all serial ports
-#if defined(STANDARD_SERIAL_OUTPUT)
-    STANDARD_SERIAL_OUTPUT.flush();  // for debugging
-#endif
-#if defined DEBUGGING_SERIAL_OUTPUT
-    DEBUGGING_SERIAL_OUTPUT.flush();  // for debugging
-#endif
 
     // Stop any I2C connections
+    MS_DEEP_DBG(F("Ending I2C"));
     // This function actually disables the two-wire pin functionality and
     // turns off the internal pull-up resistors.
     Wire.end();
@@ -760,37 +769,65 @@ void Logger::systemSleep(void) {
     digitalWrite(SCL, LOW);
 #endif
 
-#if defined ARDUINO_ARCH_SAMD
-
     // Disable the watch-dog timer
+    MS_DEEP_DBG(F("Disabling the watchdog"));
     watchDogTimer.disableWatchDog();
 
-#ifndef USE_TINYUSB
+// Wait until the serial ports have finished transmitting
+// This does not clear their buffers, it just waits until they are finished
+// TODO(SRGDamia1):  Make sure can find all serial ports
+#if defined(STANDARD_SERIAL_OUTPUT)
+    STANDARD_SERIAL_OUTPUT.flush();  // for debugging
+#endif
+#if defined DEBUGGING_SERIAL_OUTPUT
+    DEBUGGING_SERIAL_OUTPUT.flush();  // for debugging
+#endif
+
+#if defined ARDUINO_ARCH_SAMD
+
+#ifndef USE_TINYUSB&& defined(USBCON)
     // Detach the USB, iff not using TinyUSB
-    MS_DEEP_DBG(F("USBDevice.detach"));
+    MS_DEEP_DBG(F("Detaching USB"));
+    Serial.flush();  // wait for any outgoing messages on Serial = USB
     USBDevice.detach();
-    MS_DEEP_DBG(F("USBDevice.end"));
     USBDevice.end();
     USBDevice.standby();
 #endif
 
+    // Copied from Adafruit SleepDog
+    // Enable standby sleep mode (deepest sleep) and activate.
+    // Insights from Atmel ASF library.
+
+    // NOTE: The macros SAMD20_SERIES and SAMD21_SERIES capture all of the MCU
+    // defines for all processors in that series.
+
 #if defined(__SAMD51__)
+    // Set the sleep config
     // PM_SLEEPCFG_SLEEPMODE_BACKUP = 0x4
     PM->SLEEPCFG.bit.SLEEPMODE = 0x4;
     while (PM->SLEEPCFG.bit.SLEEPMODE != 0x4)
         ;  // Wait for it to take
 #else
-    // Disable systick interrupt:  See
-    // https://www.avrfreaks.net/forum/samd21-samd21e16b-sporadically-locks-and-does-not-wake-standby-sleep-mode
+    // Don't fully power down flash when in sleep
+    // Adafruit SleepDog and ArduinoLowPower both do this.
+    // TODO: Figure out if this is really necessary
+    // NVMCTRL->CTRLB.bit.SLEEPPRM = NVMCTRL_CTRLB_SLEEPPRM_DISABLED_Val;
+
+    // Disable systick interrupt
     // Due to a hardware bug on the SAMD21, the SysTick interrupts become active
     // before the flash has powered up from sleep, causing a hard fault. To
     // prevent this the SysTick interrupts are disabled before entering sleep
     // mode.
     SysTick->CTRL &= ~SysTick_CTRL_TICKINT_Msk;
-    // Now go to sleep
+    // Set the sleep config
+    // SCB = System Control Space Base Address
+    // SCR = System Control Register
+    // SCB_SCR_SLEEPDEEP_Msk = (1UL << 2U), the position of the deep sleep bit
+    // in the system control register
     SCB->SCR |= SCB_SCR_SLEEPDEEP_Msk;
 #endif
 
+    // Actually sleep
     __DSB();  // Data sync to ensure outgoing memory accesses complete
     __WFI();  // Wait for interrupt (places device in sleep mode)
 
@@ -812,9 +849,6 @@ void Logger::systemSleep(void) {
     // SLEEP_MODE_PWR_DOWN     -the most power savings
     set_sleep_mode(SLEEP_MODE_PWR_DOWN);
 
-    // Disable the watch-dog timer
-    watchDogTimer.disableWatchDog();
-
     // Temporarily disables interrupts, so no mistakes are made when writing
     // to the processor registers
     noInterrupts();
@@ -857,13 +891,12 @@ void Logger::systemSleep(void) {
     // -- The portion below this happens on wake up, after any wake ISR's --
 
 #if defined ARDUINO_ARCH_SAMD
-#if (SAMD20_SERIES || SAMD21_SERIES)
-    // Reattach the USB after waking
+#if not defined(__SAMD51__)
     // Enable systick interrupt
     SysTick->CTRL |= SysTick_CTRL_TICKINT_Msk;
 #endif
     // Reattach the USB
-#ifndef USE_TINYUSB
+#ifndef USE_TINYUSB&& defined(USBCON)
     USBDevice.init();
     USBDevice.attach();
 #endif
@@ -891,10 +924,15 @@ void Logger::systemSleep(void) {
 
 #endif
 
+    // Wake-up message
+    MS_DBG(F("\n\n\n... zzzZZ Processor is now awake!"));
+
     // Re-enable the watch-dog timer
+    MS_DEEP_DBG(F("Re-enabling the watchdog"));
     watchDogTimer.enableWatchDog();
 
-// Re-start the I2C interface
+    // Re-start the I2C interface
+    MS_DEEP_DBG(F("Restarting I2C"));
 #ifdef SDA
     pinMode(SDA, INPUT_PULLUP);  // set as input with the pull-up on
 #endif
@@ -915,17 +953,16 @@ void Logger::systemSleep(void) {
     // Stop the clock from sending out any interrupts while we're awake.
     // There's no reason to waste thought on the clock interrupt if it
     // happens while the processor is awake and doing other things.
+    MS_DEEP_DBG(F("Unsetting the alarm on the DS2321"));
     rtc.disableInterrupts();
     // Detach the from the pin
     disableInterrupt(_mcuWakePin);
 
 #elif defined ARDUINO_ARCH_SAMD
+    MS_DEEP_DBG(F("Unsetting the alarm on the built in RTC"));
     zero_sleep_rtc.disableAlarm();
 #endif
 
-    // Wake-up message
-    MS_DBG(F("\n\n\n... zzzZZ Processor is now awake!"));
-
     // The logger will now start the next function after the systemSleep
     // function in either the loop or setup
 }
@@ -1340,7 +1377,7 @@ void Logger::begin() {
            F("minute intervals."));
 
 #if defined(ARDUINO_ARCH_SAMD)
-    MS_DBG(F("Disabling the USB on stnadby to lower sleep current"));
+    MS_DBG(F("Disabling the USB on standby to lower sleep current"));
     USB->DEVICE.CTRLA.bit.ENABLE = 0;  // Disable the USB peripheral
     while (USB->DEVICE.SYNCBUSY.bit.ENABLE)
         ;                                // Wait for synchronization
diff --git a/src/WatchDogs/WatchDogSAMD.cpp b/src/WatchDogs/WatchDogSAMD.cpp
index 7163ac823..4c176ad8f 100644
--- a/src/WatchDogs/WatchDogSAMD.cpp
+++ b/src/WatchDogs/WatchDogSAMD.cpp
@@ -34,6 +34,7 @@ void extendedWatchDogSAMD::setupWatchDog(uint32_t resetTime_s) {
            F("times before the reset."));
 
 // Disable watchdog for config
+    MS_DEEP_DBG(F("Disabling the watchdog for configuration."));
 #if defined(__SAMD51__)
     WDT->CTRLA.reg = 0;
 #else
@@ -44,47 +45,149 @@ void extendedWatchDogSAMD::setupWatchDog(uint32_t resetTime_s) {
 #if defined(__SAMD51__)
     // SAMD51 WDT uses OSCULP32k as input clock now
     // section: 20.5.3
+    MS_DEEP_DBG(F("Configuring the output of the ultra-low power internal 32k "
+                  "oscillator for the watchdog."));
     OSC32KCTRL->OSCULP32K.bit.EN1K  = 1;  // Enable out 1K (for WDT)
     OSC32KCTRL->OSCULP32K.bit.EN32K = 0;  // Disable out 32K
-
     waitForWDTBitSync();
 
-    USB->DEVICE.CTRLA.bit.ENABLE = 0;  // Disable the USB peripheral
+    MS_DEEP_DBG(F("Making sure the the USB will be disabled on standby."));
+    USB->DEVICE.CTRLA.bit.ENABLE = 0;  // Disable the USB peripheral for config
     while (USB->DEVICE.SYNCBUSY.bit.ENABLE) {
         // Wait for synchronization
     }
     USB->DEVICE.CTRLA.bit.RUNSTDBY = 0;  // Deactivate run on standby
-    USB->DEVICE.CTRLA.bit.ENABLE   = 1;  // Enable the USB peripheral
+    USB->DEVICE.CTRLA.bit.ENABLE   = 1;  // Re-enable the USB peripheral
     while (USB->DEVICE.SYNCBUSY.bit.ENABLE) {
         // Wait for synchronization
     }
 
 #else  // SAMD21
 
-    // We're going to use generic clock generator *5*
-    // Many watch-dog examples use 2, but this conflicts with RTC-zero
-    // Generic clock generator 5, divisor = 32 (2^(DIV+1))  = 4
-    GCLK->GENDIV.reg = GCLK_GENDIV_ID(5) |  // Select Generic Clock Generator 5
+    // Within the SAMD core for the SAMD21
+    // SystemInit() in startup.c configures these clocks:
+    // 1) Enable XOSC32K clock (External on-board 32.768Hz oscillator) or
+    //    OSC32K (if crystalless).
+    //     - This will be used as DFLL48M reference.
+    // 2) Put XOSC32K as source of Generic Clock Generator 1
+    // 3) Put Generic Clock Generator 1 as source for Generic Clock Multiplexer
+    //    0 (DFLL48M reference)
+    // 4) Enable DFLL48M clock
+    // 5) Switch Generic Clock Generator 0 to DFLL48M. CPU will run at 48MHz.
+    // 6) Modify PRESCaler value of OSCM to have 8MHz
+    // 7) Put OSC8M as source for Generic Clock Generator 3
+    // See:
+    // https://github.com/adafruit/ArduinoCore-samd/blob/ce20340620bfd9c545649ee5c4873888ee0475d0/cores/arduino/startup.c#L311
+
+    // The ZeroPowerManager library changes clocks (including the main clock
+    // source, GCLK_MAIN, which is always sourced from GCLKGEN[0]) to reduce
+    // power draw. Changing the GCLK_MAIN configuration will cause some
+    // functions like delay() to operate incorrectly. See:
+    // https://github.com/ee-quipment/ZeroPowerManager/blob/master/ZeroPowerManager.c#L170
+    // To avoid any confusing with delay(), we're not going to change anything
+    // with GCLK0. This means we won't be in the lowest power state like that
+    // offered by ZeroPowerManager
+    // TODO: Revisit this decision
+
+    // After a power-on reset, the clock generators for peripherals default to:
+    // RTC: GCLK0
+    // WDT: GCLK2
+    // Anything else: GCLK0
+
+    // We're going to configure generic clock generator 2, which is the default
+    // for the watchdog. RTCZero uses the same clock for the RTC. Because we're
+    // using identical divisors and prescalers, we can share the clock
+    // generator. We will also use the very same generator for the external
+    // nterrupt controller (EIC).
+
+    // The watchdog must be attached to a clock source so it can tell how much
+    // time has passed and whether it needs to bite.
+
+    // The external interrupt controller must be attached to a on clock to tell
+    // the difference between rising and falling interrupts. If the external
+    // interupt controller is not attached to a running clock, then interrupts
+    // will not work! Thus, if the clock source for interrupts is not running in
+    // standby, the interrupts will not be able to wake the device. In
+    // WInterrupts.c in the Adafruit SAMD core, generic clock generator 0 (ie
+    // GCLK_MAIN) is used for the EIC peripheral. See:
+    // https://github.com/adafruit/ArduinoCore-samd/blob/ce20340620bfd9c545649ee5c4873888ee0475d0/cores/arduino/WInterrupts.c#L56
+    // We'll shift the interrupts to clock 2, configured to our liking.
+
+    // Configure the generic clock generator divisor for generator 2
+    // The divisor register must be configured before generator control register
+    // Generic clock generator 2, divisor = 32 (2^(DIV+1))  = 4
+    GCLK->GENDIV.reg = GCLK_GENDIV_ID(2) |  // Select Generic Clock Generator 5
         GCLK_GENDIV_DIV(4);                 // Divide the clock source by 32
     while (GCLK->STATUS.bit.SYNCBUSY) {
         // Wait for synchronization
     }
 
-    // Enable clock generator 5 using low-power 32.768kHz oscillator.
-    // With /32 divisor above, this yields 1024Hz clock.
-    GCLK->GENCTRL.reg = GCLK_GENCTRL_ID(5) |  // Select GCLK5
-        GCLK_GENCTRL_GENEN |          // Enable the generic clock clontrol
-        GCLK_GENCTRL_SRC_OSCULP32K |  // Select the ultra-low power oscillator
-        GCLK_GENCTRL_IDC |            // Set the duty cycle to 50/50 HIGH/LOW
+// Configure the generic clock generator 2 to use the 32.768kHz external or
+// internal oscillator and the divisor above.
+// With /32 divisor above, this yields 1024Hz clock.
+// By default, the XOSC32K is stopped in standby, while the default for the
+// OSCULP32K is to run in standby.
+// NOTE: there is also a generic XOSC which can be attached to crystal of any
+// frequency from 0.4-32MHz, but we're only supporting a 32.768kHz crystal.
+#ifndef CRYSTALLESS
+    // If there is an external 32.768 kHz crystal, use it
+
+    // configure the settings for the oscillator
+
+    MS_DEEP_DBG(F("Configuring the external 32k oscillator."));
+    SYSCTRL->XOSC32K.reg =
+        SYSCTRL_XOSC32K_ONDEMAND |    // run only when demanded by a peripheral
+        SYSCTRL_XOSC32K_RUNSTDBY |    // run the external oscillator in standby
+                                      // (iff demanded by peripheral)
+        SYSCTRL_XOSC32K_EN32K |       // enable the 32kHz output
+        SYSCTRL_XOSC32K_XTALEN |      // specify that the crystal is connected
+                                      // between XIN32/XOUT32
+        SYSCTRL_XOSC32K_STARTUP(6) |  // set the start up to 0x6 (??)
+        SYSCTRL_XOSC32K_ENABLE;       // enable the oscillator
+
+    // source GCLK2 from the external oscillator
+    MS_DEEP_DBG(F("Setting the external 32k oscillator as the clock source for "
+                  "the generic clock generator 2."));
+    GCLK->GENCTRL.reg = GCLK_GENCTRL_ID(2) |  // Select GCLK2
+        GCLK_GENCTRL_GENEN |        // Enable the generic clock clontrol
+        GCLK_GENCTRL_SRC_XOSC32K |  // Select the external crystal
+        GCLK_GENCTRL_RUNSTDBY |     // DO run in standby
         GCLK_GENCTRL_DIVSEL;  // Select to divide clock by the prescaler above
-    while (GCLK->STATUS.bit.SYNCBUSY) {
-        // Wait for synchronization
-    }
 
-    // Feed GCLK5 to WDT (Watchdog Timer)
-    GCLK->CLKCTRL.reg = GCLK_CLKCTRL_GEN_GCLK5 |  // Select generic clock 5
-        GCLK_CLKCTRL_CLKEN |  // Enable the generic clock clontrol
-        GCLK_CLKCTRL_ID_WDT;  // Feed the GCLK to the WDT
+#else
+    // If there isn't an external crystal, use the built-in ultra-low power
+    // internal 32.768kHz oscillator.
+
+    // NOTE: There are no settings we need to configure for ultra-low power
+    // internal oscillator (OSCULP32K). The only things that can be configured
+    // are the write lock and over-writing the factory calibration. We don't
+    // want to do either of those.
+
+    // source GCLK2 from the external oscillator
+    MS_DEEP_DBG(F("Setting the ultra-low power internal 32k oscillator as the "
+                  "clock source for the generic clock generator 2."));
+    GCLK->GENCTRL.reg = GCLK_GENCTRL_ID(2) |  // Select GCLK2
+        GCLK_GENCTRL_GENEN |          // Enable the generic clock clontrol
+        GCLK_GENCTRL_SRC_OSCULP32K |  // built-in ultra-low power internal
+                                      // oscillator
+        GCLK_GENCTRL_RUNSTDBY |       // DO run in standby
+        GCLK_GENCTRL_DIVSEL;          // Select to divide clock by
+                                      // the prescaler above
+#endif
+    while (GCLK->STATUS.reg & GCLK_STATUS_SYNCBUSY)
+        ;  // Wait for synchronization
+
+    GCLK->GENCTRL.bit.RUNSTDBY = 1;  // run standby
+    while (GCLK->STATUS.reg & GCLK_STATUS_SYNCBUSY)
+        ;  // Wait for synchronization
+
+    // Feed configured GCLK2 to WDT (Watchdog Timer) **AND** the EIC (external
+    // interrupt controller)
+    MS_DEEP_DBG(F("Feeding configured GCLK2 to WDT and EIC"));
+    GCLK->CLKCTRL.reg = GCLK_CLKCTRL_GEN(2) |  // Select generic clock 2
+        GCLK_CLKCTRL_CLKEN |        // Enable the generic clock clontrol
+        GCLK_CLKCTRL_ID(GCM_WDT) |  // Feed the GCLK to the WDT
+        GCLK_CLKCTRL_ID(GCM_EIC);   // Feed the GCLK to the EIC
     while (GCLK->STATUS.bit.SYNCBUSY) {
         // Wait for synchronization
     }

From 37ee8019077ac1b1d7d7dc9e007b9deecbad07fe Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Sun, 25 Aug 2024 23:39:34 -0400
Subject: [PATCH 21/24] Update changelog, bump version

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 ChangeLog.md         | 22 +++++++++++++++++++---
 VERSION              |  2 +-
 docs/Doxyfile        |  2 +-
 library.json         |  2 +-
 library.properties   |  2 +-
 src/LoggerBase.cpp   |  2 +-
 src/ModularSensors.h |  2 +-
 7 files changed, 25 insertions(+), 9 deletions(-)

diff --git a/ChangeLog.md b/ChangeLog.md
index fc8f7d2ec..f28d4a38e 100644
--- a/ChangeLog.md
+++ b/ChangeLog.md
@@ -12,8 +12,6 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 ### Changed
 
-- Switched to reusable workflows for CI
-
 ### Added
 
 ### Removed
@@ -23,6 +21,21 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 ***
 
 
+## [0.35.1]
+
+### Changed
+
+- **BREAKING** Switched default clock for SAMD21 from the built-in 32bit RTC to the DS3231.
+*This is not be a permanent change.*
+- Switched to reusable workflows for CI
+
+### Fixed
+
+Fixed clock configuration for SAMD21
+
+***
+
+
 ## [0.35.0]
 
 ### Changed
@@ -831,7 +844,10 @@ Our first release of the modular sensors library to support easily logging data
 
 ***
 
-[Unreleased]: https://github.com/EnviroDIY/ModularSensors/compare/v0.33.4...HEAD
+[Unreleased]: https://github.com/EnviroDIY/ModularSensors/compare/v0.35.1...HEAD
+[0.35.1]: https://github.com/EnviroDIY/ModularSensors/releases/tag/v0.35.1
+[0.35.0]: https://github.com/EnviroDIY/ModularSensors/releases/tag/v0.35.0
+[0.34.0]: https://github.com/EnviroDIY/ModularSensors/releases/tag/v0.34.0
 [0.33.4]: https://github.com/EnviroDIY/ModularSensors/releases/tag/v0.33.4
 [0.33.3]: https://github.com/EnviroDIY/ModularSensors/releases/tag/v0.33.3
 [0.33.2]: https://github.com/EnviroDIY/ModularSensors/releases/tag/v0.33.2
diff --git a/VERSION b/VERSION
index 7b52f5e51..731b95d7f 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-0.35.0
+0.35.1
diff --git a/docs/Doxyfile b/docs/Doxyfile
index f1c5914d1..2a6aa481d 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -48,7 +48,7 @@ PROJECT_NAME           = ModularSensors
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 0.35.0
+PROJECT_NUMBER         = 0.35.1
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
diff --git a/library.json b/library.json
index 687ebf63a..a964d33f7 100644
--- a/library.json
+++ b/library.json
@@ -1,6 +1,6 @@
 {
   "name": "EnviroDIY_ModularSensors",
-  "version": "0.35.0",
+  "version": "0.35.1",
   "description": "A library that allows access to multiple sensors through a unified interface.  This allows the user to simply access many sensors to log the data or send the data to data repositories like the EnviroDIY data portal.",
   "keywords": "modular, sensor, sensors, datalogger, logger, low power, sleeping, EnviroDIY, ModularSensors, Mayfly, WikiWatershed, Monitor My Watershed, ThingSpeak",
   "platforms": "atmelavr, atmelsam",
diff --git a/library.properties b/library.properties
index 8fd05ee5d..755fd5d22 100644
--- a/library.properties
+++ b/library.properties
@@ -1,5 +1,5 @@
 name=ModularSensors
-version=0.35.0
+version=0.35.1
 author=Sara Damiano <sdamiano@stroudcenter.org>, Shannon Hicks <shicks@stroudcenter.org>
 maintainer=Sara Damiano <sdamiano@stroudcenter.org>
 sentence=A library that allows access to multiple sensors through a unified interface.
diff --git a/src/LoggerBase.cpp b/src/LoggerBase.cpp
index 0d4ff60de..3c8564458 100644
--- a/src/LoggerBase.cpp
+++ b/src/LoggerBase.cpp
@@ -719,7 +719,7 @@ void Logger::systemSleep(void) {
     // clock source for the EIC to GCLK0 every time a new interrupt is attached
     // - and after being detached, reattaching the same interrupt is just like a
     // new one). We need to switch the EIC source back to our configured GCLK2.
-    Serial.println(F("Re-attaching the EIC to GCLK2"));
+    MS_DEEP_DBG(F("Re-attaching the EIC to GCLK2"));
     GCLK->CLKCTRL.reg = GCLK_CLKCTRL_GEN(2) |  // Select generic clock 2
         GCLK_CLKCTRL_CLKEN |       // Enable the generic clock clontrol
         GCLK_CLKCTRL_ID(GCM_EIC);  // Feed the GCLK to the EIC
diff --git a/src/ModularSensors.h b/src/ModularSensors.h
index 313cb58cd..6b07cc4c5 100644
--- a/src/ModularSensors.h
+++ b/src/ModularSensors.h
@@ -19,7 +19,7 @@
  * A pre-release version will always be indicated as slightly ahead of the
  * EnviroDIY branch that it is based on.
  */
-#define MODULAR_SENSORS_VERSION "0.35.0"
+#define MODULAR_SENSORS_VERSION "0.35.1"
 
 // To support interrupts
 #include "ModSensorInterrupts.h"

From dd729449b5ac1f93c7e34b2cb38fd489c6c539d5 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Mon, 26 Aug 2024 00:53:19 -0400
Subject: [PATCH 22/24] Don't attempt bad version of KellerModbus

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 continuous_integration/dependencies.json | 112 +++++++++++++++++------
 library.json                             |   6 +-
 2 files changed, 87 insertions(+), 31 deletions(-)

diff --git a/continuous_integration/dependencies.json b/continuous_integration/dependencies.json
index 874230ccb..a59eeceec 100644
--- a/continuous_integration/dependencies.json
+++ b/continuous_integration/dependencies.json
@@ -1,14 +1,17 @@
 {
-  "action_cache_version": 18,
+  "action_cache_version": 19,
   "dependencies": [
     {
       "name": "EnviroDIY_DS3231",
       "owner": "envirodiy",
       "library id": "2079",
       "url": "https://github.com/EnviroDIY/Sodaq_DS3231",
-      "version": "~1.3.4",
+      "version": "~1.3.5",
       "note": "An Arduino library for the DS3231 RTC (Real Time Clock), based off of the Sodaq_DS3231 library.",
-      "authors": ["Kees Bakker", "Sara Damiano"],
+      "authors": [
+        "Kees Bakker",
+        "Sara Damiano"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -19,7 +22,9 @@
       "url": "https://github.com/arduino-libraries/RTCZero",
       "version": "~1.6.0",
       "note": "Functions for using the processor real time clock in SAMD21 processors",
-      "authors": ["Arduino"],
+      "authors": [
+        "Arduino"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelsam"
     },
@@ -30,7 +35,9 @@
       "url": "https://github.com/GreyGnome/EnableInterrupt",
       "version": "~1.1.0",
       "note": "GreyGnome's EnableInterrupt - Assign an interrupt to any supported pin on all Arduinos",
-      "authors": ["Mike 'GreyGnome' Schwager"],
+      "authors": [
+        "Mike 'GreyGnome' Schwager"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -41,7 +48,9 @@
       "url": "https://github.com/greiman/SdFat",
       "version": "~2.2.3",
       "note": "SdFat - FAT16/FAT32 file system for SD cards.",
-      "authors": ["Bill Greiman"],
+      "authors": [
+        "Bill Greiman"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -50,7 +59,10 @@
       "owner": "vshymanskyy",
       "version": "~0.11.7",
       "note": "A small Arduino library for GPRS modules.",
-      "authors": ["Volodymyr Shymanskyy", "Sara Damiano"],
+      "authors": [
+        "Volodymyr Shymanskyy",
+        "Sara Damiano"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -59,9 +71,11 @@
       "owner": "knolleary",
       "library id": "89",
       "url": "https://github.com/knolleary/pubsubclient",
-      "version": "~2.8",
+      "version": "~2.8.0",
       "note": "A client library for MQTT messaging.",
-      "authors": ["Nick O'Leary"]
+      "authors": [
+        "Nick O'Leary"
+      ]
     },
     {
       "name": "Adafruit BusIO",
@@ -70,7 +84,9 @@
       "url": "https://github.com/adafruit/Adafruit_BusIO",
       "version": "~1.16.0",
       "note": "Adafruit BusIO, a dependency of other Adafruit libraries",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -81,7 +97,9 @@
       "url": "https://github.com/adafruit/Adafruit_Sensor",
       "version": "~1.1.14",
       "note": "Adafruit's unified sensor library is used by their other libraries",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -91,7 +109,9 @@
       "version_note": "=1.2.0",
       "version": "https://github.com/soligen2010/Adafruit_ADS1X15.git#7d67b451f739e9a63f40f2d6d139ab582258572b",
       "note": "Driver for TI's ADS1015: 12-bit Differential or Single-Ended ADC with PGA and Comparator.  This fork removes bugs in the Adafruit original library.",
-      "authors_note": ["soligen2010"],
+      "authors_note": [
+        "soligen2010"
+      ],
       "frameworks_note": "arduino",
       "platforms_note": "*"
     },
@@ -102,7 +122,9 @@
       "url": "https://github.com/adafruit/Adafruit_AM2315",
       "version": "~2.2.3",
       "note": "AOSong AM2315 I2C Temp/Humidity Sensor Library by Adafruit",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -113,7 +135,9 @@
       "url": "https://github.com/adafruit/Adafruit_BME280_Library",
       "version": "~2.2.4",
       "note": "Bosch BME280 Temp/Humidity/Pressure Sensor Library by Adafruit",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -122,7 +146,9 @@
       "owner": "MartinL1",
       "version": "~1.0.11",
       "note": "An Arduino compatible, non-blocking, I2C/SPI library for the Bosch BMP388 barometer.",
-      "authors": ["Martin Lindupp"],
+      "authors": [
+        "Martin Lindupp"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -133,7 +159,9 @@
       "url": "https://github.com/adafruit/DHT-sensor-library",
       "version": "~1.4.6",
       "note": "AOSong DHT Sensor Library by Adafruit",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -144,7 +172,9 @@
       "url": "https://github.com/adafruit/Adafruit_INA219",
       "version": "~1.2.3",
       "note": "This is a library for the Adafruit INA219 high side DC current sensor boards",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -155,7 +185,9 @@
       "url": "https://github.com/adafruit/Adafruit_MPL115A2",
       "version": "~2.0.2",
       "note": "MPL115A2 Barometer Library by Adafruit",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino"
     },
     {
@@ -165,7 +197,9 @@
       "url": "https://github.com/adafruit/Adafruit_SHT4X",
       "version": "~1.0.4",
       "note": "Sensirion SHT4x Library by Adafruit",
-      "authors": ["Adafruit"],
+      "authors": [
+        "Adafruit"
+      ],
       "frameworks": "arduino"
     },
     {
@@ -199,7 +233,12 @@
       "url": "https://github.com/milesburton/Arduino-Temperature-Control-Library",
       "version": "~3.11.0",
       "note": "DallasTemperature - Arduino Library for Dallas Temperature ICs (DS18B20, DS18S20, DS1822, DS1820)",
-      "authors": ["Guil Barros", "Miles Burton", "Rob Tillart", "Tim Nuewsome"],
+      "authors": [
+        "Guil Barros",
+        "Miles Burton",
+        "Rob Tillart",
+        "Tim Nuewsome"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -226,14 +265,22 @@
       "url": "https://github.com/NorthernWidget/MS5803",
       "version": "~0.1.2",
       "note": "General interface to MS5803-series pressure transducers",
-      "authors": ["Bobby Schulz", "Andrew Wickert", "Chad Sandell", "Sara Damiano"]
+      "authors": [
+        "Bobby Schulz",
+        "Andrew Wickert",
+        "Chad Sandell",
+        "Sara Damiano"
+      ]
     },
     {
       "name": "Tally_Library_I2C",
       "version": "https://github.com/EnviroDIY/Tally_Library.git#Dev_I2C",
       "version_note": "Uses `Dev_I2C` feature branch",
       "note": "An Arduino library for interfacing to the Project Tally Event counter from NorthernWidget.",
-      "authors": ["Bobby Schulz", "Anthony Aufdenkampe"],
+      "authors": [
+        "Bobby Schulz",
+        "Anthony Aufdenkampe"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -244,7 +291,9 @@
       "url": "https://github.com/EnviroDIY/SensorModbusMaster",
       "version": "~0.6.8",
       "note": "EnviroDIY SensorModbusMaster - Arduino library for communicating via modbus with the Arduino acting as the modbus master.",
-      "authors": ["Sara Damiano"],
+      "authors": [
+        "Sara Damiano"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -253,9 +302,11 @@
       "owner": "envirodiy",
       "library id": "5439",
       "url": "https://github.com/EnviroDIY/KellerModbus",
-      "version": "~0.2.2",
+      "version": "~0.2.3",
       "note": "Arduino library for communication with Keller pressure and water level sensors via Modbus.",
-      "authors": ["Anthony Aufdenkampe"]
+      "authors": [
+        "Anthony Aufdenkampe"
+      ]
     },
     {
       "name": "YosemitechModbus",
@@ -264,7 +315,10 @@
       "url": "https://github.com/EnviroDIY/YosemitechModbus",
       "version": "~0.4.1",
       "note": "Arduino library for communication with Yosemitech sensors via Modbus.",
-      "authors": ["Sara Damiano", "Anthony Aufdenkampe"],
+      "authors": [
+        "Sara Damiano",
+        "Anthony Aufdenkampe"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     },
@@ -274,9 +328,11 @@
       "url": "https://github.com/EnviroDIY/GroPointModbus.git",
       "version": "~0.1.0",
       "note": "A library to use an Arduino as a master to control and communicate via modbus with GroPoint soil moisture sensors. ",
-      "authors": ["Anthony Aufdenkampe"],
+      "authors": [
+        "Anthony Aufdenkampe"
+      ],
       "frameworks": "arduino",
       "platforms": "atmelavr, atmelsam"
     }
   ]
-}
+}
\ No newline at end of file
diff --git a/library.json b/library.json
index a964d33f7..a8518e866 100644
--- a/library.json
+++ b/library.json
@@ -67,7 +67,7 @@
       "owner": "envirodiy",
       "library id": "2079",
       "url": "https://github.com/EnviroDIY/Sodaq_DS3231",
-      "version": "~1.3.4",
+      "version": "~1.3.5",
       "note": "An Arduino library for the DS3231 RTC (Real Time Clock), based off of the Sodaq_DS3231 library.",
       "authors": ["Kees Bakker", "Sara Damiano"],
       "frameworks": "arduino",
@@ -120,7 +120,7 @@
       "owner": "knolleary",
       "library id": "89",
       "url": "https://github.com/knolleary/pubsubclient",
-      "version": "~2.8",
+      "version": "~2.8.0",
       "note": "A client library for MQTT messaging.",
       "authors": ["Nick O'Leary"]
     },
@@ -314,7 +314,7 @@
       "owner": "envirodiy",
       "library id": "5439",
       "url": "https://github.com/EnviroDIY/KellerModbus",
-      "version": "~0.2.2",
+      "version": "~0.2.3",
       "note": "Arduino library for communication with Keller pressure and water level sensors via Modbus.",
       "authors": ["Anthony Aufdenkampe"]
     },

From a3f5dada096dfec5f74a79f37d8fceedb3c468c6 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Mon, 26 Aug 2024 01:13:10 -0400
Subject: [PATCH 23/24] Fix release inputs

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 .github/workflows/prepare_release.yaml | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/prepare_release.yaml b/.github/workflows/prepare_release.yaml
index 62f618b3e..6bcf69a7e 100644
--- a/.github/workflows/prepare_release.yaml
+++ b/.github/workflows/prepare_release.yaml
@@ -6,6 +6,12 @@ on:
     paths:
       - 'VERSION' # Push events when the VERSION file changes
   workflow_dispatch:
+    inputs:
+      include_dependencies:
+        description: 'True to include a zip file with dependencies in the release'
+        required: false
+        type: boolean
+        default: true
 
 name: Create a New Release
 
@@ -45,5 +51,4 @@ jobs:
     uses: EnviroDIY/workflows/.github/workflows/prepare_release.yaml@main
     secrets: inherit
     with:
-      library-manager: 'update'
-      library-compliance: 'strict'
+      include_dependencies: ${{ ( true ) || (github.event_name == 'workflow_dispatch' && github.event.inputs.publish == 'true') }}

From eb03a690fed68ec5fc3a2e35fb335656351f5ec4 Mon Sep 17 00:00:00 2001
From: Sara Damiano <sdamiano@stroudcenter.org>
Date: Mon, 26 Aug 2024 02:24:24 -0400
Subject: [PATCH 24/24] Fixed define check

Signed-off-by: Sara Damiano <sdamiano@stroudcenter.org>
---
 src/LoggerBase.cpp | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/LoggerBase.cpp b/src/LoggerBase.cpp
index 3c8564458..07078d116 100644
--- a/src/LoggerBase.cpp
+++ b/src/LoggerBase.cpp
@@ -785,7 +785,7 @@ void Logger::systemSleep(void) {
 
 #if defined ARDUINO_ARCH_SAMD
 
-#ifndef USE_TINYUSB&& defined(USBCON)
+#if not defined(USE_TINYUSB) && defined(USBCON)
     // Detach the USB, iff not using TinyUSB
     MS_DEEP_DBG(F("Detaching USB"));
     Serial.flush();  // wait for any outgoing messages on Serial = USB
@@ -896,7 +896,7 @@ void Logger::systemSleep(void) {
     SysTick->CTRL |= SysTick_CTRL_TICKINT_Msk;
 #endif
     // Reattach the USB
-#ifndef USE_TINYUSB&& defined(USBCON)
+#if not defined(USE_TINYUSB) && defined(USBCON)
     USBDevice.init();
     USBDevice.attach();
 #endif