config file not properly applied

[Seneral]

I'm facing an issue where, from what I can tell, the config file IS properly appended to the command, but for some reason, the options in it are not applied, but when they are added to the command line directly, they are.
I've added an excerpt of the log for both cases:

with "codechecker.executor.arguments": "--disable clang-diagnostic-sign-compare":

CodeChecker analyze --output .codechecker/reports build/compile_commands.json --file test.cpp --disable clang-diagnostic-sign-compare
[INFO 2024-03-02 03:19] - No checkers enabled for gcc
[INFO 2024-03-02 03:19] - Enabled checkers:
clang-tidy: bugprone-assert-side-effect, bugprone-bool-pointer-implicit-conversion, bugprone-copy-constructor-init, bugprone-dangling-handle, bugprone-dynamic-static-initializers, bugprone-fold-init-type, bugprone-forward-declaration-namespace, bugprone-forwarding-reference-overload, bugprone-inaccurate-erase, bugprone-incorrect-roundings, bugprone-infinite-loop, bugprone-integer-division, bugprone-lambda-function-name, bugprone-macro-repeated-side-effects, bugprone-misplaced-operator-in-strlen-in-alloc, bugprone-misplaced-pointer-arithmetic-in-alloc, bugprone-misplaced-widening-cast, bugprone-move-forwarding-reference, bugprone-not-null-terminated-result, bugprone-shared-ptr-array-mismatch, bugprone-signal-handler, bugprone-signed-char-misuse, bugprone-sizeof-container, bugprone-sizeof-expression, bugprone-standalone-empty, bugprone-string-constructor, bugprone-stringview-nullptr, bugprone-string-literal-with-embedded-nul, bugprone-suspicious-enum-usage, bugprone-suspicious-memory-comparison, bugprone-suspicious-memset-usage, bugprone-suspicious-missing-comma, bugprone-suspicious-realloc-usage, bugprone-suspicious-semicolon, bugprone-swapped-arguments, bugprone-terminating-continue, bugprone-throw-keyword-missing, bugprone-too-small-loop-variable, bugprone-undefined-memory-manipulation, bugprone-undelegated-constructor, bugprone-unhandled-exception-at-new, bugprone-unused-raii, bugprone-unused-return-value, bugprone-use-after-move, bugprone-virtual-near-miss, cert-dcl54-cpp, cert-dcl58-cpp, cert-dcl59-cpp, cert-err09-cpp, cert-fio38-c, cert-mem57-cpp, cert-oop11-cpp, cert-oop58-cpp, cert-pos44-c, cert-pos47-c, clang-diagnostic-array-bounds-pointer-arithmetic, clang-diagnostic-bitwise-conditional-parentheses, clang-diagnostic-bitwise-instead-of-logical, clang-diagnostic-bitwise-op-parentheses, clang-diagnostic-bool-operation, clang-diagnostic-cast-of-sel-type, clang-diagnostic-char-subscripts, clang-diagnostic-comment, clang-diagnostic-comments, clang-diagnostic-dangling-else, clang-diagnostic-delete-abstract-non-virtual-dtor, clang-diagnostic-delete-non-abstract-non-virtual-dtor, clang-diagnostic-delete-non-virtual-dtor, clang-diagnostic-deprecated-copy, clang-diagnostic-deprecated-copy-with-dtor, clang-diagnostic-deprecated-copy-with-user-provided-dtor, clang-diagnostic-deprecated-copy-dtor, clang-diagnostic-deprecated-copy-with-user-provided-copy, clang-diagnostic-division-by-zero, clang-diagnostic-double-promotion, clang-diagnostic-embedded-directive, clang-diagnostic-empty-init-stmt, clang-diagnostic-extern-c-compat, clang-diagnostic-float-conversion, clang-diagnostic-for-loop-analysis, clang-diagnostic-format, clang-diagnostic-format-non-iso, clang-diagnostic-format-pedantic, clang-diagnostic-format-type-confusion, clang-diagnostic-format=2, clang-diagnostic-format-extra-args, clang-diagnostic-format-insufficient-args, clang-diagnostic-format-invalid-specifier, clang-diagnostic-format-nonliteral, clang-diagnostic-format-security, clang-diagnostic-format-y2k, clang-diagnostic-format-zero-length, clang-diagnostic-frame-address, clang-diagnostic-fuse-ld-path, clang-diagnostic-ignored-qualifiers, clang-diagnostic-ignored-reference-qualifiers, clang-diagnostic-implicit, clang-diagnostic-implicit-atomic-properties, clang-diagnostic-implicit-conversion-floating-point-to-bool, clang-diagnostic-implicit-exception-spec-mismatch, clang-diagnostic-implicit-fallthrough, clang-diagnostic-implicit-fallthrough-per-function, clang-diagnostic-implicit-fixed-point-conversion, clang-diagnostic-implicit-retain-self, clang-diagnostic-implicitly-unsigned-literal, clang-diagnostic-implicit-float-conversion, clang-diagnostic-implicit-const-int-float-conversion, clang-diagnostic-implicit-function-declaration, clang-diagnostic-implicit-int, clang-diagnostic-implicit-int-conversion, clang-diagnostic-implicit-int-float-conversion, clang-diagnostic-infinite-recursion, clang-diagnostic-initializer-overrides, clang-diagnostic-int-in-bool-context, clang-diagnostic-logical-not-parentheses, clang-diagnostic-logical-op-parentheses, clang-diagnostic-misleading-indentation, clang-diagnostic-mismatched-tags, clang-diagnostic-missing-braces, clang-diagnostic-missing-field-initializers, clang-diagnostic-missing-method-return-type, clang-diagnostic-most, clang-diagnostic-move, clang-diagnostic-multichar, clang-diagnostic-non-virtual-dtor, clang-diagnostic-nonnull, clang-diagnostic-null-pointer-arithmetic, clang-diagnostic-null-pointer-subtraction, clang-diagnostic-objc-designated-initializers, clang-diagnostic-objc-flexible-array, clang-diagnostic-objc-missing-super-calls, clang-diagnostic-overloaded-shift-op-parentheses, clang-diagnostic-overloaded-virtual, clang-diagnostic-parentheses, clang-diagnostic-parentheses-equality, clang-diagnostic-pessimizing-move, clang-diagnostic-potentially-evaluated-expression, clang-diagnostic-private-extern, clang-diagnostic-range-loop-construct, clang-diagnostic-redundant-move, clang-diagnostic-reorder, clang-diagnostic-reorder-ctor, clang-diagnostic-reorder-init-list, clang-diagnostic-return-std-move, clang-diagnostic-return-type, clang-diagnostic-return-type-c-linkage, clang-diagnostic-self-assign, clang-diagnostic-self-assign-field, clang-diagnostic-self-assign-overloaded, clang-diagnostic-self-move, clang-diagnostic-semicolon-before-method-body, clang-diagnostic-shift-op-parentheses, clang-diagnostic-sizeof-array-argument, clang-diagnostic-sizeof-array-decay, clang-diagnostic-sometimes-uninitialized, clang-diagnostic-static-in-inline, clang-diagnostic-static-self-init, clang-diagnostic-string-concatenation, clang-diagnostic-string-plus-int, clang-diagnostic-switch, clang-diagnostic-switch-default, clang-diagnostic-switch-enum, clang-diagnostic-switch-bool, clang-diagnostic-tautological-bitwise-compare, clang-diagnostic-tautological-compare, clang-diagnostic-tautological-constant-compare, clang-diagnostic-tautological-constant-out-of-range-compare, clang-diagnostic-tautological-objc-bool-compare, clang-diagnostic-tautological-overlap-compare, clang-diagnostic-tautological-pointer-compare, clang-diagnostic-tautological-undefined-compare, clang-diagnostic-trigraphs, clang-diagnostic-unevaluated-expression, clang-diagnostic-uninitialized, clang-diagnostic-uninitialized-const-reference, clang-diagnostic-unknown-pragmas, clang-diagnostic-unneeded-internal-declaration, clang-diagnostic-unused-argument, clang-diagnostic-unused-but-set-parameter, clang-diagnostic-unused-but-set-variable, clang-diagnostic-unused-comparison, clang-diagnostic-unused-const-variable, clang-diagnostic-unused-function, clang-diagnostic-unused-label, clang-diagnostic-unused-lambda-capture, clang-diagnostic-unused-local-typedef, clang-diagnostic-unused-local-typedefs, clang-diagnostic-unused-parameter, clang-diagnostic-unused-private-field, clang-diagnostic-unused-property-ivar, clang-diagnostic-unused-result, clang-diagnostic-unused-value, clang-diagnostic-unused-variable, clang-diagnostic-user-defined-warnings, clang-diagnostic-volatile-register-var, concurrency-thread-canceltype-asynchronous, cppcoreguidelines-avoid-reference-coroutine-parameters, cppcoreguidelines-virtual-class-destructor, google-build-namespaces, misc-confusable-identifiers, misc-definitions-in-headers, misc-misleading-bidirectional, misc-misleading-identifier, misc-misplaced-const, misc-redundant-expression, misc-unconventional-assign-operator, misc-uniqueptr-reset-release, performance-inefficient-algorithm, performance-move-const-arg, performance-move-constructor-init, performance-no-automatic-move, performance-noexcept-move-constructor, performance-trivially-destructible, readability-container-contains, readability-container-data-pointer, readability-suspicious-call-argument
cppcheck: cppcheck-IOWithoutPositioning, cppcheck-StlMissingComparison, cppcheck-accessForwarded, cppcheck-accessMoved, cppcheck-argumentSize, cppcheck-arrayIndexOutOfBounds, cppcheck-arrayIndexOutOfBoundsCond, cppcheck-assertWithSideEffect, cppcheck-assignBoolToPointer, cppcheck-assignmentInAssert, cppcheck-autoVariables, cppcheck-autovarInvalidDeallocation, cppcheck-badBitmaskCheck, cppcheck-boostForeachError, cppcheck-bufferAccessOutOfBounds, cppcheck-charBitOp, cppcheck-charLiteralWithCharPtrCompare, cppcheck-checkCastIntToCharAndBack, cppcheck-clarifyStatement, cppcheck-compareBoolExpressionWithInt, cppcheck-comparePointers, cppcheck-comparisonFunctionIsAlwaysTrueOrFalse, cppcheck-comparisonOfBoolWithInvalidComparator, cppcheck-constStatement, cppcheck-containerOutOfBounds, cppcheck-copyCtorAndEqOperator, cppcheck-copyCtorPointerCopying, cppcheck-coutCerrMisusage, cppcheck-danglingLifetime, cppcheck-danglingReference, cppcheck-danglingTemporaryLifetime, cppcheck-deallocDealloc, cppcheck-deallocret, cppcheck-deallocuse, cppcheck-derefInvalidIterator, cppcheck-divideSizeof, cppcheck-doubleFree, cppcheck-duplInheritedMember, cppcheck-eraseDereference, cppcheck-exceptDeallocThrow, cppcheck-exceptThrowInDestructor, cppcheck-floatConversionOverflow, cppcheck-funcArgOrderDifferent, cppcheck-identicalConditionAfterEarlyExit, cppcheck-identicalInnerCondition, cppcheck-ignoredReturnValue, cppcheck-incompatibleFileOpen, cppcheck-incompleteArrayFill, cppcheck-incorrectCharBooleanError, cppcheck-incorrectLogicOperator, cppcheck-incorrectStringBooleanError, cppcheck-incorrectStringCompare, cppcheck-integerOverflow, cppcheck-invalidContainerLoop, cppcheck-invalidContainer, cppcheck-invalidFree, cppcheck-invalidFunctionArg, cppcheck-invalidFunctionArgBool, cppcheck-invalidFunctionArgStr, cppcheck-invalidIterator1, cppcheck-invalidLengthModifierError, cppcheck-invalidLifetime, cppcheck-invalidPrintfArgType_float, cppcheck-invalidPrintfArgType_n, cppcheck-invalidPrintfArgType_p, cppcheck-invalidPrintfArgType_s, cppcheck-invalidPrintfArgType_sint, cppcheck-invalidPrintfArgType_uint, cppcheck-invalidScanfArgType_float, cppcheck-invalidScanfArgType_int, cppcheck-invalidScanfArgType_s, cppcheck-invalidScanfFormatWidth, cppcheck-invalidScanfFormatWidth_smaller, cppcheck-invalidTestForOverflow, cppcheck-invalidscanf, cppcheck-iterators1, cppcheck-iterators2, cppcheck-iterators3, cppcheck-iteratorsCmp1, cppcheck-iteratorsCmp2, cppcheck-leakNoVarFunctionCall, cppcheck-leakReturnValNotUsed, cppcheck-leakUnsafeArgAlloc, cppcheck-literalWithCharPtrCompare, cppcheck-mallocOnClassError, cppcheck-mallocOnClassWarning, cppcheck-memleak, cppcheck-memleakOnRealloc, cppcheck-memsetClass, cppcheck-memsetClassFloat, cppcheck-memsetClassReference, cppcheck-memsetValueOutOfRange, cppcheck-memsetZeroBytes, cppcheck-mismatchAllocDealloc, cppcheck-mismatchSize, cppcheck-mismatchingContainerExpression, cppcheck-mismatchingContainers, cppcheck-missingMemberCopy, cppcheck-missingReturn, cppcheck-moduloAlwaysTrueFalse, cppcheck-multiplySizeof, cppcheck-negativeArraySize, cppcheck-negativeContainerIndex, cppcheck-negativeIndex, cppcheck-negativeMemoryAllocationSize, cppcheck-noCopyConstructor, cppcheck-noDestructor, cppcheck-noOperatorEq, cppcheck-nullPointer, cppcheck-nullPointerArithmetic, cppcheck-nullPointerArithmeticRedundantCheck, cppcheck-nullPointerDefaultArg, cppcheck-nullPointerRedundantCheck, cppcheck-objectIndex, cppcheck-operatorEqMissingReturnStatement, cppcheck-operatorEqToSelf, cppcheck-operatorEqVarError, cppcheck-oppositeInnerCondition, cppcheck-overlappingStrcmp, cppcheck-overlappingWriteFunction, cppcheck-overlappingWriteUnion, cppcheck-pointerAdditionResultNotNull, cppcheck-pointerArithBool, cppcheck-pointerSize, cppcheck-publicAllocationError, cppcheck-pureVirtualCall, cppcheck-raceAfterInterlockedDecrement, cppcheck-readWriteOnlyFile, cppcheck-redundantAssignInSwitch, cppcheck-redundantBitwiseOperationInSwitch, cppcheck-redundantCopyInSwitch, cppcheck-resourceLeak, cppcheck-rethrowNoCurrentException, cppcheck-returnAddressOfAutoVariable, cppcheck-returnAddressOfFunctionParameter, cppcheck-returnDanglingLifetime, cppcheck-returnLocalVariable, cppcheck-returnReference, cppcheck-returnTempReference, cppcheck-seekOnAppendedFile, cppcheck-selfAssignment, cppcheck-selfInitialization, cppcheck-shiftNegativeLHS, cppcheck-shiftNegative, cppcheck-shiftTooManyBits, cppcheck-shiftTooManyBitsSigned, cppcheck-signConversion, cppcheck-signedCharArrayIndex, cppcheck-sizeofCalculation, cppcheck-sizeofDivisionMemfunc, cppcheck-sizeofFunctionCall, cppcheck-sizeofsizeof, cppcheck-sizeofwithnumericparameter, cppcheck-sizeofwithsilentarraypointer, cppcheck-sprintfOverlappingData, cppcheck-staticStringCompare, cppcheck-stlBoundaries, cppcheck-stlIfFind, cppcheck-stlOutOfBounds, cppcheck-stlcstr, cppcheck-stlcstrReturn, cppcheck-stlcstrParam, cppcheck-stlcstrthrow, cppcheck-strPlusChar, cppcheck-stringCompare, cppcheck-stringLiteralWrite, cppcheck-suspiciousCase, cppcheck-suspiciousSemicolon, cppcheck-thisSubtraction, cppcheck-throwInNoexceptFunction, cppcheck-uninitDerivedMemberVar, cppcheck-uninitDerivedMemberVarPrivate, cppcheck-uninitMemberVar, cppcheck-uninitMemberVarPrivate, cppcheck-uninitStructMember, cppcheck-uninitdata, cppcheck-uninitstring, cppcheck-uninitvar, cppcheck-unknownEvaluationOrder, cppcheck-unsafeClassRefMember, cppcheck-unusedLabelSwitch, cppcheck-unusedLabelSwitchConfiguration, cppcheck-useClosedFile, cppcheck-uselessAssignmentPtrArg, cppcheck-uselessCallsCompare, cppcheck-uselessCallsEmpty, cppcheck-uselessCallsRemove, cppcheck-va_end_missing, cppcheck-va_list_usedBeforeStarted, cppcheck-va_start_referencePassed, cppcheck-va_start_subsequentCalls, cppcheck-va_start_wrongParameter, cppcheck-virtualCallInConstructor, cppcheck-virtualDestructor, cppcheck-writeReadOnlyFile, cppcheck-wrongPipeParameterSize, cppcheck-wrongPrintfScanfArgNum, cppcheck-wrongPrintfScanfParameterPositionError, cppcheck-wrongmathcall, cppcheck-zerodiv, cppcheck-zerodivcond
clangsa: alpha.security.cert.pos.34c, core.CallAndMessage, core.DivideZero, core.NonNullParamChecker, core.NullDereference, core.StackAddressEscape, core.UndefinedBinaryOperatorResult, core.VLASize, core.uninitialized.ArraySubscript, core.uninitialized.Assign, core.uninitialized.Branch, core.uninitialized.CapturedBlockVariable, core.uninitialized.NewArraySize, core.uninitialized.UndefReturn, cplusplus.InnerPointer, cplusplus.Move, cplusplus.NewDelete, cplusplus.NewDeleteLeaks, cplusplus.PlacementNew, cplusplus.PureVirtualCall, cplusplus.StringChecker, deadcode.DeadStores, nullability.NullPassedToNonnull, nullability.NullReturnedFromNonnull, optin.cplusplus.UninitializedObject, optin.cplusplus.VirtualCall, optin.portability.UnixAPI, alpha.security.cert.env.InvalidPtr, security.FloatLoopCounter, security.insecureAPI.UncheckedReturn, security.insecureAPI.getpw, security.insecureAPI.gets, security.insecureAPI.mkstemp, security.insecureAPI.mktemp, security.insecureAPI.rand, security.insecureAPI.vfork, unix.API, unix.Malloc, unix.MallocSizeof, unix.MismatchedDeallocator, unix.Vfork, unix.cstring.BadSizeArg, unix.cstring.NullArg, valist.CopyToSelf, valist.Uninitialized, valist.Unterminated

and with "codechecker.executor.arguments": "--config codechecker.json" and codechecker.json:

{
    "analyze": [
      "--disable clang-diagnostic-sign-compare"
    ]
}

[INFO 2024-03-02 03:21] - Extending command line options with analyze options from 'codechecker.json' file: --disable clang-diagnostic-sign-compare
[INFO 2024-03-02 03:21] - Full extended command: /opt/CodeChecker/lib/python3/codechecker_common/cli.py analyze --output .codechecker/reports build/compile_commands.json --file test.cpp --disable clang-diagnostic-sign-compare
[INFO 2024-03-02 03:21] - No checkers enabled for gcc
[INFO 2024-03-02 03:21] - Enabled checkers:
clangsa: alpha.security.cert.pos.34c, core.CallAndMessage, core.DivideZero, core.NonNullParamChecker, core.NullDereference, core.StackAddressEscape, core.UndefinedBinaryOperatorResult, core.VLASize, core.uninitialized.ArraySubscript, core.uninitialized.Assign, core.uninitialized.Branch, core.uninitialized.CapturedBlockVariable, core.uninitialized.NewArraySize, core.uninitialized.UndefReturn, cplusplus.InnerPointer, cplusplus.Move, cplusplus.NewDelete, cplusplus.NewDeleteLeaks, cplusplus.PlacementNew, cplusplus.PureVirtualCall, cplusplus.StringChecker, deadcode.DeadStores, nullability.NullPassedToNonnull, nullability.NullReturnedFromNonnull, optin.cplusplus.UninitializedObject, optin.cplusplus.VirtualCall, optin.portability.UnixAPI, alpha.security.cert.env.InvalidPtr, security.FloatLoopCounter, security.insecureAPI.UncheckedReturn, security.insecureAPI.getpw, security.insecureAPI.gets, security.insecureAPI.mkstemp, security.insecureAPI.mktemp, security.insecureAPI.rand, security.insecureAPI.vfork, unix.API, unix.Malloc, unix.MallocSizeof, unix.MismatchedDeallocator, unix.Vfork, unix.cstring.BadSizeArg, unix.cstring.NullArg, valist.CopyToSelf, valist.Uninitialized, valist.Unterminated
cppcheck: cppcheck-IOWithoutPositioning, cppcheck-StlMissingComparison, cppcheck-accessForwarded, cppcheck-accessMoved, cppcheck-argumentSize, cppcheck-arrayIndexOutOfBounds, cppcheck-arrayIndexOutOfBoundsCond, cppcheck-assertWithSideEffect, cppcheck-assignBoolToPointer, cppcheck-assignmentInAssert, cppcheck-autoVariables, cppcheck-autovarInvalidDeallocation, cppcheck-badBitmaskCheck, cppcheck-boostForeachError, cppcheck-bufferAccessOutOfBounds, cppcheck-charBitOp, cppcheck-charLiteralWithCharPtrCompare, cppcheck-checkCastIntToCharAndBack, cppcheck-clarifyStatement, cppcheck-compareBoolExpressionWithInt, cppcheck-comparePointers, cppcheck-comparisonFunctionIsAlwaysTrueOrFalse, cppcheck-comparisonOfBoolWithInvalidComparator, cppcheck-constStatement, cppcheck-containerOutOfBounds, cppcheck-copyCtorAndEqOperator, cppcheck-copyCtorPointerCopying, cppcheck-coutCerrMisusage, cppcheck-danglingLifetime, cppcheck-danglingReference, cppcheck-danglingTemporaryLifetime, cppcheck-deallocDealloc, cppcheck-deallocret, cppcheck-deallocuse, cppcheck-derefInvalidIterator, cppcheck-divideSizeof, cppcheck-doubleFree, cppcheck-duplInheritedMember, cppcheck-eraseDereference, cppcheck-exceptDeallocThrow, cppcheck-exceptThrowInDestructor, cppcheck-floatConversionOverflow, cppcheck-funcArgOrderDifferent, cppcheck-identicalConditionAfterEarlyExit, cppcheck-identicalInnerCondition, cppcheck-ignoredReturnValue, cppcheck-incompatibleFileOpen, cppcheck-incompleteArrayFill, cppcheck-incorrectCharBooleanError, cppcheck-incorrectLogicOperator, cppcheck-incorrectStringBooleanError, cppcheck-incorrectStringCompare, cppcheck-integerOverflow, cppcheck-invalidContainerLoop, cppcheck-invalidContainer, cppcheck-invalidFree, cppcheck-invalidFunctionArg, cppcheck-invalidFunctionArgBool, cppcheck-invalidFunctionArgStr, cppcheck-invalidIterator1, cppcheck-invalidLengthModifierError, cppcheck-invalidLifetime, cppcheck-invalidPrintfArgType_float, cppcheck-invalidPrintfArgType_n, cppcheck-invalidPrintfArgType_p, cppcheck-invalidPrintfArgType_s, cppcheck-invalidPrintfArgType_sint, cppcheck-invalidPrintfArgType_uint, cppcheck-invalidScanfArgType_float, cppcheck-invalidScanfArgType_int, cppcheck-invalidScanfArgType_s, cppcheck-invalidScanfFormatWidth, cppcheck-invalidScanfFormatWidth_smaller, cppcheck-invalidTestForOverflow, cppcheck-invalidscanf, cppcheck-iterators1, cppcheck-iterators2, cppcheck-iterators3, cppcheck-iteratorsCmp1, cppcheck-iteratorsCmp2, cppcheck-leakNoVarFunctionCall, cppcheck-leakReturnValNotUsed, cppcheck-leakUnsafeArgAlloc, cppcheck-literalWithCharPtrCompare, cppcheck-mallocOnClassError, cppcheck-mallocOnClassWarning, cppcheck-memleak, cppcheck-memleakOnRealloc, cppcheck-memsetClass, cppcheck-memsetClassFloat, cppcheck-memsetClassReference, cppcheck-memsetValueOutOfRange, cppcheck-memsetZeroBytes, cppcheck-mismatchAllocDealloc, cppcheck-mismatchSize, cppcheck-mismatchingContainerExpression, cppcheck-mismatchingContainers, cppcheck-missingMemberCopy, cppcheck-missingReturn, cppcheck-moduloAlwaysTrueFalse, cppcheck-multiplySizeof, cppcheck-negativeArraySize, cppcheck-negativeContainerIndex, cppcheck-negativeIndex, cppcheck-negativeMemoryAllocationSize, cppcheck-noCopyConstructor, cppcheck-noDestructor, cppcheck-noOperatorEq, cppcheck-nullPointer, cppcheck-nullPointerArithmetic, cppcheck-nullPointerArithmeticRedundantCheck, cppcheck-nullPointerDefaultArg, cppcheck-nullPointerRedundantCheck, cppcheck-objectIndex, cppcheck-operatorEqMissingReturnStatement, cppcheck-operatorEqToSelf, cppcheck-operatorEqVarError, cppcheck-oppositeInnerCondition, cppcheck-overlappingStrcmp, cppcheck-overlappingWriteFunction, cppcheck-overlappingWriteUnion, cppcheck-pointerAdditionResultNotNull, cppcheck-pointerArithBool, cppcheck-pointerSize, cppcheck-publicAllocationError, cppcheck-pureVirtualCall, cppcheck-raceAfterInterlockedDecrement, cppcheck-readWriteOnlyFile, cppcheck-redundantAssignInSwitch, cppcheck-redundantBitwiseOperationInSwitch, cppcheck-redundantCopyInSwitch, cppcheck-resourceLeak, cppcheck-rethrowNoCurrentException, cppcheck-returnAddressOfAutoVariable, cppcheck-returnAddressOfFunctionParameter, cppcheck-returnDanglingLifetime, cppcheck-returnLocalVariable, cppcheck-returnReference, cppcheck-returnTempReference, cppcheck-seekOnAppendedFile, cppcheck-selfAssignment, cppcheck-selfInitialization, cppcheck-shiftNegativeLHS, cppcheck-shiftNegative, cppcheck-shiftTooManyBits, cppcheck-shiftTooManyBitsSigned, cppcheck-signConversion, cppcheck-signedCharArrayIndex, cppcheck-sizeofCalculation, cppcheck-sizeofDivisionMemfunc, cppcheck-sizeofFunctionCall, cppcheck-sizeofsizeof, cppcheck-sizeofwithnumericparameter, cppcheck-sizeofwithsilentarraypointer, cppcheck-sprintfOverlappingData, cppcheck-staticStringCompare, cppcheck-stlBoundaries, cppcheck-stlIfFind, cppcheck-stlOutOfBounds, cppcheck-stlcstr, cppcheck-stlcstrReturn, cppcheck-stlcstrParam, cppcheck-stlcstrthrow, cppcheck-strPlusChar, cppcheck-stringCompare, cppcheck-stringLiteralWrite, cppcheck-suspiciousCase, cppcheck-suspiciousSemicolon, cppcheck-thisSubtraction, cppcheck-throwInNoexceptFunction, cppcheck-uninitDerivedMemberVar, cppcheck-uninitDerivedMemberVarPrivate, cppcheck-uninitMemberVar, cppcheck-uninitMemberVarPrivate, cppcheck-uninitStructMember, cppcheck-uninitdata, cppcheck-uninitstring, cppcheck-uninitvar, cppcheck-unknownEvaluationOrder, cppcheck-unsafeClassRefMember, cppcheck-unusedLabelSwitch, cppcheck-unusedLabelSwitchConfiguration, cppcheck-useClosedFile, cppcheck-uselessAssignmentPtrArg, cppcheck-uselessCallsCompare, cppcheck-uselessCallsEmpty, cppcheck-uselessCallsRemove, cppcheck-va_end_missing, cppcheck-va_list_usedBeforeStarted, cppcheck-va_start_referencePassed, cppcheck-va_start_subsequentCalls, cppcheck-va_start_wrongParameter, cppcheck-virtualCallInConstructor, cppcheck-virtualDestructor, cppcheck-writeReadOnlyFile, cppcheck-wrongPipeParameterSize, cppcheck-wrongPrintfScanfArgNum, cppcheck-wrongPrintfScanfParameterPositionError, cppcheck-wrongmathcall, cppcheck-zerodiv, cppcheck-zerodivcond
clang-tidy: bugprone-assert-side-effect, bugprone-bool-pointer-implicit-conversion, bugprone-copy-constructor-init, bugprone-dangling-handle, bugprone-dynamic-static-initializers, bugprone-fold-init-type, bugprone-forward-declaration-namespace, bugprone-forwarding-reference-overload, bugprone-inaccurate-erase, bugprone-incorrect-roundings, bugprone-infinite-loop, bugprone-integer-division, bugprone-lambda-function-name, bugprone-macro-repeated-side-effects, bugprone-misplaced-operator-in-strlen-in-alloc, bugprone-misplaced-pointer-arithmetic-in-alloc, bugprone-misplaced-widening-cast, bugprone-move-forwarding-reference, bugprone-not-null-terminated-result, bugprone-shared-ptr-array-mismatch, bugprone-signal-handler, bugprone-signed-char-misuse, bugprone-sizeof-container, bugprone-sizeof-expression, bugprone-standalone-empty, bugprone-string-constructor, bugprone-stringview-nullptr, bugprone-string-literal-with-embedded-nul, bugprone-suspicious-enum-usage, bugprone-suspicious-memory-comparison, bugprone-suspicious-memset-usage, bugprone-suspicious-missing-comma, bugprone-suspicious-realloc-usage, bugprone-suspicious-semicolon, bugprone-swapped-arguments, bugprone-terminating-continue, bugprone-throw-keyword-missing, bugprone-too-small-loop-variable, bugprone-undefined-memory-manipulation, bugprone-undelegated-constructor, bugprone-unhandled-exception-at-new, bugprone-unused-raii, bugprone-unused-return-value, bugprone-use-after-move, bugprone-virtual-near-miss, cert-dcl54-cpp, cert-dcl58-cpp, cert-dcl59-cpp, cert-err09-cpp, cert-fio38-c, cert-mem57-cpp, cert-oop11-cpp, cert-oop58-cpp, cert-pos44-c, cert-pos47-c, clang-diagnostic-array-bounds-pointer-arithmetic, clang-diagnostic-bitwise-conditional-parentheses, clang-diagnostic-bitwise-instead-of-logical, clang-diagnostic-bitwise-op-parentheses, clang-diagnostic-bool-operation, clang-diagnostic-cast-of-sel-type, clang-diagnostic-char-subscripts, clang-diagnostic-comment, clang-diagnostic-comments, clang-diagnostic-dangling-else, clang-diagnostic-delete-abstract-non-virtual-dtor, clang-diagnostic-delete-non-abstract-non-virtual-dtor, clang-diagnostic-delete-non-virtual-dtor, clang-diagnostic-deprecated-copy, clang-diagnostic-deprecated-copy-with-dtor, clang-diagnostic-deprecated-copy-with-user-provided-dtor, clang-diagnostic-deprecated-copy-dtor, clang-diagnostic-deprecated-copy-with-user-provided-copy, clang-diagnostic-division-by-zero, clang-diagnostic-double-promotion, clang-diagnostic-embedded-directive, clang-diagnostic-empty-init-stmt, clang-diagnostic-extern-c-compat, clang-diagnostic-float-conversion, clang-diagnostic-for-loop-analysis, clang-diagnostic-format, clang-diagnostic-format-non-iso, clang-diagnostic-format-pedantic, clang-diagnostic-format-type-confusion, clang-diagnostic-format=2, clang-diagnostic-format-extra-args, clang-diagnostic-format-insufficient-args, clang-diagnostic-format-invalid-specifier, clang-diagnostic-format-nonliteral, clang-diagnostic-format-security, clang-diagnostic-format-y2k, clang-diagnostic-format-zero-length, clang-diagnostic-frame-address, clang-diagnostic-fuse-ld-path, clang-diagnostic-ignored-qualifiers, clang-diagnostic-ignored-reference-qualifiers, clang-diagnostic-implicit, clang-diagnostic-implicit-atomic-properties, clang-diagnostic-implicit-conversion-floating-point-to-bool, clang-diagnostic-implicit-exception-spec-mismatch, clang-diagnostic-implicit-fallthrough, clang-diagnostic-implicit-fallthrough-per-function, clang-diagnostic-implicit-fixed-point-conversion, clang-diagnostic-implicit-retain-self, clang-diagnostic-implicitly-unsigned-literal, clang-diagnostic-implicit-float-conversion, clang-diagnostic-implicit-const-int-float-conversion, clang-diagnostic-implicit-function-declaration, clang-diagnostic-implicit-int, clang-diagnostic-implicit-int-conversion, clang-diagnostic-implicit-int-float-conversion, clang-diagnostic-infinite-recursion, clang-diagnostic-initializer-overrides, clang-diagnostic-int-in-bool-context, clang-diagnostic-logical-not-parentheses, clang-diagnostic-logical-op-parentheses, clang-diagnostic-misleading-indentation, clang-diagnostic-mismatched-tags, clang-diagnostic-missing-braces, clang-diagnostic-missing-field-initializers, clang-diagnostic-missing-method-return-type, clang-diagnostic-most, clang-diagnostic-move, clang-diagnostic-multichar, clang-diagnostic-non-virtual-dtor, clang-diagnostic-nonnull, clang-diagnostic-null-pointer-arithmetic, clang-diagnostic-null-pointer-subtraction, clang-diagnostic-objc-designated-initializers, clang-diagnostic-objc-flexible-array, clang-diagnostic-objc-missing-super-calls, clang-diagnostic-overloaded-shift-op-parentheses, clang-diagnostic-overloaded-virtual, clang-diagnostic-parentheses, clang-diagnostic-parentheses-equality, clang-diagnostic-pessimizing-move, clang-diagnostic-potentially-evaluated-expression, clang-diagnostic-private-extern, clang-diagnostic-range-loop-construct, clang-diagnostic-redundant-move, clang-diagnostic-reorder, clang-diagnostic-reorder-ctor, clang-diagnostic-reorder-init-list, clang-diagnostic-return-std-move, clang-diagnostic-return-type, clang-diagnostic-return-type-c-linkage, clang-diagnostic-self-assign, clang-diagnostic-self-assign-field, clang-diagnostic-self-assign-overloaded, clang-diagnostic-self-move, clang-diagnostic-semicolon-before-method-body, clang-diagnostic-shift-op-parentheses, clang-diagnostic-sign-compare, clang-diagnostic-sizeof-array-argument, clang-diagnostic-sizeof-array-decay, clang-diagnostic-sometimes-uninitialized, clang-diagnostic-static-in-inline, clang-diagnostic-static-self-init, clang-diagnostic-string-concatenation, clang-diagnostic-string-plus-int, clang-diagnostic-switch, clang-diagnostic-switch-default, clang-diagnostic-switch-enum, clang-diagnostic-switch-bool, clang-diagnostic-tautological-bitwise-compare, clang-diagnostic-tautological-compare, clang-diagnostic-tautological-constant-compare, clang-diagnostic-tautological-constant-out-of-range-compare, clang-diagnostic-tautological-objc-bool-compare, clang-diagnostic-tautological-overlap-compare, clang-diagnostic-tautological-pointer-compare, clang-diagnostic-tautological-undefined-compare, clang-diagnostic-trigraphs, clang-diagnostic-unevaluated-expression, clang-diagnostic-uninitialized, clang-diagnostic-uninitialized-const-reference, clang-diagnostic-unknown-pragmas, clang-diagnostic-unneeded-internal-declaration, clang-diagnostic-unused-argument, clang-diagnostic-unused-but-set-parameter, clang-diagnostic-unused-but-set-variable, clang-diagnostic-unused-comparison, clang-diagnostic-unused-const-variable, clang-diagnostic-unused-function, clang-diagnostic-unused-label, clang-diagnostic-unused-lambda-capture, clang-diagnostic-unused-local-typedef, clang-diagnostic-unused-local-typedefs, clang-diagnostic-unused-parameter, clang-diagnostic-unused-private-field, clang-diagnostic-unused-property-ivar, clang-diagnostic-unused-result, clang-diagnostic-unused-value, clang-diagnostic-unused-variable, clang-diagnostic-user-defined-warnings, clang-diagnostic-volatile-register-var, concurrency-thread-canceltype-asynchronous, cppcoreguidelines-avoid-reference-coroutine-parameters, cppcoreguidelines-virtual-class-destructor, google-build-namespaces, misc-confusable-identifiers, misc-definitions-in-headers, misc-misleading-bidirectional, misc-misleading-identifier, misc-misplaced-const, misc-redundant-expression, misc-unconventional-assign-operator, misc-uniqueptr-reset-release, performance-inefficient-algorithm, performance-move-const-arg, performance-move-constructor-init, performance-no-automatic-move, performance-noexcept-move-constructor, performance-trivially-destructible, readability-container-contains, readability-container-data-pointer, readability-suspicious-call-argument

It can be seen that both expand to the same final command, but the second one using the config file still has clang-diagnostic-sign-compare enabled.
The command here has a different binary path, but that's just because there is no config supplied. I can verify that it's the same when the config file is still used (and unrelated parameters appended), and as long as the option is directly in the settings, it is applied, and if it is in the config file, it isn't.
Thanks for any help!

[Discookie]

I think the reason for the config file not working is because it's supposed to take each argument separately, so the full command line is parsed as if it was passed as ".../cli.py" "analyze" "--output" ".codechecker/reports" "--disable clang-diagnostic-sign-compare", and not as "--disable" "clang-diagnostic-sign-compare" or "--disable=clang-diagnostic-sign-compare".

Two potential fixes could be to write --disable= instead of --disable , or break it up into multiple arguments such as "analyze": [ "--disable", "..." ].