extra/operon_detect_pipeline.svg

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            <text x="552.871px" y="341.557px" style="font-family:'Verdana-Bold', 'Verdana', sans-serif;font-weight:700;font-size:50px;">Reference Operon:</text>
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            <text x="552.871px" y="341.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">[Gene_1,</text>
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            <text x="552.871px" y="341.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- CSV</text>
            <text x="552.871px" y="391.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- Operon diagr<tspan x="920.864px 950.893px " y="391.557px 391.557px ">am</tspan>s</text>
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            <text x="615.102px" y="341.557px" style="font-family:'Verdana-Bold', 'Verdana', sans-serif;font-weight:700;font-size:50px;">tBLASTn search each gene in the</text>
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            <text x="557.79px" y="341.557px" style="font-family:'Verdana-Bold', 'Verdana', sans-serif;font-weight:700;font-size:50px;">Group GenomeFragment objects into</text>
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            <text x="681.472px" y="341.557px" style="font-family:'Verdana-Bold', 'Verdana', sans-serif;font-weight:700;font-size:50px;">Process each Species object</text>
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            <text x="552.871px" y="341.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- Pull all records within e-<tspan x="1199.09px 1227.7px 1257.73px " y="341.557px 341.557px 341.557px ">val</tspan>ue limit</text>
            <text x="552.871px" y="391.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- Apply co<tspan x="806.558px 835.708px 865.493px 885.952px 915.981px " y="391.557px 391.557px 391.557px 391.557px 391.557px ">verag</tspan>e ﬁlter</text>
            <text x="552.871px" y="441.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- R<tspan x="626.699px 656.484px " y="441.557px 441.557px ">et</tspan>urn hits as AnnotatedHit objects</text>
            <text x="552.871px" y="491.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- Filter hits with a local R<tspan x="1182.58px 1212.37px 1241.52px 1271.3px " y="491.557px 491.557px 491.557px 491.557px ">ever</tspan>se BLA<tspan x="1462.1px 1496.28px " y="491.557px 491.557px ">ST</tspan></text>
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            <text x="552.871px" y="341.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- Assemble operons for each fr<tspan x="1328.29px 1358.32px " y="341.557px 341.557px ">ag</tspan>ment in</text>
            <text x="552.871px" y="391.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">the Species.</text>
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            <text x="552.871px" y="541.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">hits that do not meet the minimum ID<tspan x="1515.3px " y="541.557px ">.</tspan></text>
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            <text x="552.871px" y="341.557px" style="font-family:'Verdana', sans-serif;font-size:50px;">- Mak<tspan x="694.424px 724.209px " y="341.557px 341.557px ">e </tspan>a local BLA<tspan x="1016.88px 1051.06px " y="341.557px 341.557px ">ST</tspan> database of the</text>
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