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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(InitErgmTerm.absdiffby)
export(adherence)
export(aging)
export(assign_ai_prop)
export(births)
export(cd4_update)
export(cd4_update2)
export(coital_acts)
export(deaths)
export(deaths_tx_time_adjusted)
export(evonet)
export(evonet_run)
export(evonet_setup)
export(evoplot)
export(evoplot_internal)
export(evorun)
export(incidence_rate_plot)
export(infection_history_plot)
export(infection_history_vl_cd4_plot)
export(initialize_agents)
export(initialize_evonet_misc)
export(initialize_infecteds_cd4)
export(initialize_infecteds_vl)
export(initialize_module)
export(initialize_popsumm_dynamics)
export(initialize_restart)
export(initialize_vl_cd4_list)
export(input_parameters_age_distribution)
export(input_parameters_agent_attributes)
export(input_parameters_asmr)
export(input_parameters_cd4_data)
export(input_parameters_derived)
export(input_parameters_popsumm_stats)
export(input_parameters_primary)
export(input_parameters_process)
export(input_parameters_qaqc)
export(input_params)
export(model_fit)
export(netsim_restart)
export(new_additions_fxn)
export(nw_setup)
export(output_plots_fxn)
export(plot_age_hist)
export(plot_aim3_drug_muts)
export(plot_disc_coital_acts_history)
export(plot_donors_cd4)
export(plot_end_epidemic_values)
export(plot_heritability_quarters)
export(plot_network_fxn)
export(plot_relationship_duration)
export(plot_relationship_history)
export(plot_summary_timeseries)
export(plot_table_parameters)
export(plot_time_to_removal)
export(plot_time_to_removal_by_spvl)
export(plot_vl_trajectories)
export(plot_vl_trajectories_aim2)
export(plot_vl_trajectories_aim3)
export(plots_popsumm)
export(plots_popsumm_all_NA_flag)
export(plots_popsumm_all_NA_plot)
export(plots_popsumm_deprecated)
export(plots_popsumm_internal)
export(plots_popsumm_mean_value)
export(plots_popsumm_mean_value_loess)
export(plots_popsumm_overlay_lines)
export(plots_popsumm_plotting)
export(plots_popsumm_ymin_ymax)
export(remove_offset_relationships)
export(restart_module)
export(risk_group_changes)
export(risk_heterogeneity_module)
export(setup_epimodel_control_object)
export(setup_initialize_network)
export(social_2nd_line_treatment_module)
export(social_act_type_het)
export(social_adherence)
export(social_bring_new_groups_into_care_module)
export(social_coital_acts)
export(social_coital_acts_module)
export(social_condom_use)
export(social_discord_edgelist)
export(social_discord_edgelist_df)
export(social_dropout_module)
export(social_generic_attribute_transition)
export(social_increased_testing_defined_groups)
export(social_increased_testing_selected_groups_module)
export(social_resistance_testing_module)
export(social_role_msm)
export(social_set_generic_attribute_on_nw)
export(social_set_msm_role_on_nw)
export(social_testing_diagnosis_eligibles_only_module)
export(social_testing_diagnosis_module)
export(social_testing_diagnosis_with_enhancements_module)
export(social_treatement_prep)
export(social_treatement_prep_SES)
export(social_treatment_dropout)
export(social_treatment_dropout_john)
export(social_treatment_module)
export(social_treatment_module_PrEP)
export(social_treatment_module_john)
export(social_treatment_module_john_v3)
export(social_treatment_module_multiple_criteria)
export(social_treatment_module_multiple_criteria_v2)
export(social_treatment_ranked)
export(social_treatment_sex_age)
export(social_treatment_vaccination)
export(social_viral_load_testing_module)
export(summary_end_epidemic_values)
export(summary_evo_newick)
export(summary_misc)
export(summary_module)
export(summary_partner_list)
export(summary_popsumm_deprec)
export(summary_popsumm_fxns)
export(summary_popsumm_generic_att_fxns)
export(summary_popsumm_mat)
export(summary_spvl_lineage)
export(summary_viral_lineage)
export(summary_vl_list)
export(targeted_treatment)
export(targeted_treatment2)
export(testing)
export(transmission)
export(transmission_bookkeeping_module)
export(transmission_cd4_module)
export(transmission_hill_fxn)
export(transmission_hughes_and_exp)
export(transmission_main_module)
export(treatment)
export(treatment_dropout)
export(utilities_annual_mortality_conversion)
export(utilities_annual_prob_conversion)
export(utilities_apportion.lr)
export(vaccination)
export(viral_initialCD4)
export(viral_lineage_fnx2)
export(viral_spvl_cat_fxn)
export(viral_update)
export(viral_update_aim3)
export(viral_update_aim3_args_list_1)
export(viral_update_aim3_args_list_2)
export(viral_update_aim3_cd4)
export(viral_update_aim3_rcpp_output)
export(viral_update_cd4_daily)
export(viral_update_cd4_daily_aids_var)
export(viral_update_cd4_daily_with_age)
export(viral_update_cd4_diff_eqn)
export(viral_update_cd4_intial_pop)
export(viral_update_cd4_simple_diff_eqn)
export(viral_update_delayed_rebound)
export(viral_update_gamma)
export(viral_update_gamma_dropout)
export(viral_update_gamma_john)
export(viral_update_gamma_treated)
export(vital_aging_module)
export(vital_births_bookkeeping_misc)
export(vital_births_bookkeeping_pop)
export(vital_births_calculate_new)
export(vital_births_module)
export(vital_death_aged_out)
export(vital_death_aids)
export(vital_death_aids_john)
export(vital_death_non_aids)
export(vital_deaths_module)
export(vital_deaths_module_john)
export(vital_initial_age_dist)
import(EpiModel)
import(RColorBrewer)
import(Rcpp)
import(ape)
import(data.table)
import(deSolve)
import(doParallel)
import(ergm)
import(foreach)
import(plotrix)
import(statnet.common)
import(tergm)
useDynLib(evonet)