From 752c4cbebe27c8f22ec067e455e22f77a0867188 Mon Sep 17 00:00:00 2001 From: "sunil.simha95@gmail.com" Date: Wed, 30 Oct 2024 00:37:41 -0500 Subject: [PATCH] download ps1_strm photoz's --- frb/surveys/panstarrs.py | 34 +++++++++++++++++++++++++++++++--- frb/tests/test_frbsurveys.py | 7 +++++-- 2 files changed, 36 insertions(+), 5 deletions(-) diff --git a/frb/surveys/panstarrs.py b/frb/surveys/panstarrs.py index 164e7020..666ca53f 100644 --- a/frb/surveys/panstarrs.py +++ b/frb/surveys/panstarrs.py @@ -10,7 +10,7 @@ from astropy import units as u,utils as astroutils from astropy.io import fits from astropy.coordinates import SkyCoord, match_coordinates_sky -from astropy.table import Table +from astropy.table import Table, join from ..galaxies.defs import PanSTARRS_bands from .images import grab_from_url @@ -20,7 +20,7 @@ from frb.surveys import surveycoord,catalog_utils,images -from IPython import embed +import os #TODO: It's potentially viable to use the same code for other #catalogs in the VizieR database. Maybe a generalization wouldn't @@ -65,7 +65,7 @@ def __init__(self,coord,radius,**kwargs): def get_catalog(self,query_fields=None,release="dr2", table="stack",print_query=False, - use_psf=False): + use_psf=False, photoz=False): """ Query a catalog in the MAST Pan-STARRS database for photometry. @@ -84,6 +84,9 @@ def get_catalog(self,query_fields=None,release="dr2", search within. use_psf: bool, optional If True, use PSFmag instead of KronMag + photoz: bool, optional + If True, also download photometric redshifts + using the Mast CasJobs API. Returns: catalog: astropy.table.Table @@ -135,6 +138,31 @@ def get_catalog(self,query_fields=None,release="dr2", bad_dec = (photom_catalog['dec']<-90)+(photom_catalog['dec']>90) bad_pos = bad_ra+bad_dec # bad_ra OR bad_dec photom_catalog = photom_catalog[~bad_pos] + + # Download photometric redshifts if requested. + if photoz: + try: + import mastcasjobs as mcj + + # Query + photoz_query = f"""SELECT m.objID, m.z_phot, m.z_photErr, m.class + FROM fGetNearbyObjEq({self.coord.ra.value}, {self.coord.dec.value}, {self.radius.to('arcmin').value}) nb + INNER JOIN catalogRecordRowStore m on m.objid=nb.objid""" + # Execute + user = os.getenv('MAST_CASJOBS_USER') + pwd = os.getenv('MAST_CASJOBS_PWD') + if user is None or pwd is None: + raise IOError("You need to set the MAST_CASJOBS_USER and MAST_CASJOBS_PWD environment variables. Create an account at https://mastweb.stsci.edu/mcasjobs/CreateAccount.aspx to get your credentials.") + job = mcj.MastCasJobs(context="HLSP_PS1_STRM", username=user, password=pwd) + photoz_tab = job.quick(photoz_query, task_name="Photo-z cone search") + photoz_tab.rename_column('objID', 'Pan-STARRS_ID') + + # Merge to the main tab + photom_catalog = join(photom_catalog, photoz_tab, keys='Pan-STARRS_ID', join_type='left') + + # Now join the + except ImportError: + warnings.warn("mastcasjobs not installed. Cannot download photometric redshifts.") # Remove duplicate entries. photom_catalog = catalog_utils.remove_duplicates(photom_catalog, "Pan-STARRS_ID") diff --git a/frb/tests/test_frbsurveys.py b/frb/tests/test_frbsurveys.py index 156327e7..d5e1ed2e 100644 --- a/frb/tests/test_frbsurveys.py +++ b/frb/tests/test_frbsurveys.py @@ -164,14 +164,17 @@ def test_first(): @remote_data def test_panstarrs(): #Test get_catalog - coord = SkyCoord(0, 0,unit="deg") + coord = SkyCoord(0., 0.,unit="deg") search_r = 30*units.arcsec ps_survey = survey_utils.load_survey_by_name('Pan-STARRS',coord,search_r) - ps_table = ps_survey.get_catalog() + ps_table = ps_survey.get_catalog(photoz=True) assert isinstance(ps_table, Table) assert len(ps_table) == 7 + assert 'z_phot' in ps_table.colnames + assert 'z_photErr' in ps_table.colnames + #Test get_cutout cutout, = ps_survey.get_cutout() assert isinstance(cutout,Image.Image)