_quarto.yml

project:
    type: website
    output-dir: ./notebook/_tmp
    render:
        - "*.qmd"
        - "*.md"
        - "docs/"
        - "!readme.md"

        # Do not render
        - "!code/"
    preview:
        port: 3334
        browser: true
        watch-inputs: true
        timeout: 300

website:
    title: "FacsimiLab - Project Template for Datalad Datasets"
    navbar:
        search: true
        left:
            - text: Home
              href: index.qmd
            - text: About
              href: notebook/about.qmd
    open-graph: true
    sidebar:
        style: "docked"
        contents: auto
    reader-mode: true
    repo-url: https://github.com/FacsimiLab/project-template
    repo-actions: [issue, edit]
    repo-link-target: "_blank"
    page-footer: "Copyright 2024: Pranav Kumar Mishra"

bibliography:
    - ./notebook/references.bib
csl: ./notebook/american-medical-association.csl

citation: false
google-scholar: true

format:
    html:
        theme:
            light: cosmo
            dark: darkly
        toc: true
        toc-depth: 3
        lang: en-US
        email-obfuscation: javascript
        code-fold: true
        code-line-numbers: true
        code-overflow: wrap
        grid:
            sidebar-width: 300px
            body-width: 900px
        default-image-extension: svg
        css: notebook/custom.css
        tbl-cap-location: bottom
        embed-resources: false

pdf-engine: lualatex

execute:
    freeze: auto
    cache: true
    error: true

affiliations:
    - id: rushortho
      name: Dept of Orthopedic Surgery, Rush University
      # department: Orthopedic Surgery
      city: Chicago
      region: IL
      country: USA
      postal-code: 60612
      affiliation-url: https://rushu.rush.edu

    - id: rushsurg
      name: Dept of Surgery, Rush University
      # department: Surgery
      address: 1735 W Harrison St, Ste 563
      city: Chicago
      region: IL
      country: USA
      postal-code: 60612
      affiliation-url: https://rushu.rush.edu

    - id: rushpeds
      name: Dept of Pediatrics, Rush University
      # department: Pediatrics
      address: 1735 W Harrison St, Ste 563
      city: Chicago
      region: IL
      country: USA
      postal-code: 60612
      affiliation-url: https://rushu.rush.edu