diff --git a/vision/vae_mnist/Manifest.toml b/vision/vae_mnist/Manifest.toml index 411490a5..f2b9693d 100644 --- a/vision/vae_mnist/Manifest.toml +++ b/vision/vae_mnist/Manifest.toml @@ -1,26 +1,29 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.2" +julia_version = "1.10.2" manifest_format = "2.0" -project_hash = "b358e238477b1e10fdd1d1976902381bcd7582dd" +project_hash = "a8eeb1c95d950b42d21ff81d9b6dfa0043ddaa80" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] -[[deps.Accessors]] -deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "Test"] -git-tree-sha1 = "eb7a1342ff77f4f9b6552605f27fd432745a53a3" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.22" + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" [[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "195c5505521008abea5aee4f96930717958eac6f" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cea4ac3f5b4bc4b3000aa55afb6e5626518948fa" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.4.0" +version = "4.0.3" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -37,37 +40,84 @@ git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.2.0" +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "44691067188f6bd1b2289552a23e4b7572f4528d" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.9.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AtomsBase]] +deps = ["LinearAlgebra", "PeriodicTable", "Printf", "Requires", "StaticArrays", "Unitful", "UnitfulAtomic"] +git-tree-sha1 = "995c2b6b17840cd87b722ce9c6cdd72f47bab545" +uuid = "a963bdd2-2df7-4f54-a1ee-49d51e6be12a" +version = "0.3.5" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "1dd4d9f5beebac0c03446918741b1a03dc5e5788" +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" uuid = 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BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -77,53 +127,67 @@ git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" -[[deps.BinaryProvider]] -deps = ["Libdl", "Logging", "SHA"] -git-tree-sha1 = "ecdec412a9abc8db54c0efc5548c64dfce072058" -uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232" -version = "0.5.10" - [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" 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[[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "0.5.2+0" +version = "1.1.0+0" [[deps.CompositionsBase]] -git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.1" +version = "0.1.2" + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + + [deps.CompositionsBase.weakdeps] + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = 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"0.6.3" + +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -258,27 +352,27 @@ uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce" version = "1.0.2" [[deps.DataAPI]] -git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.13.0" +version = "1.16.0" [[deps.DataDeps]] -deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] -git-tree-sha1 = "bc0a264d3e7b3eeb0b6fc9f6481f970697f29805" +deps = ["HTTP", "Libdl", "Reexport", "SHA", "Scratch", "p7zip_jll"] +git-tree-sha1 = "8ae085b71c462c2cb1cfedcb10c3c877ec6cf03f" uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -version = "0.7.10" +version = "0.7.13" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "0f44494fe4271cc966ac4fea524111bef63ba86c" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.3" +version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.18" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -296,7 +390,9 @@ version = "0.1.2" [[deps.DelimitedFiles]] deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -306,15 +402,20 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.15.1" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -322,43 +423,25 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd" +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.2" +version = "0.9.3" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DrWatson]] -deps = ["Dates", "FileIO", "JLD2", "LibGit2", "MacroTools", "Pkg", "Random", "Requires", "Scratch", "UnPack"] -git-tree-sha1 = 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"OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "0.1.10" [[deps.FFTViews]] deps = ["CustomUnitRanges", "FFTW"] @@ -368,9 +451,9 @@ version = "0.3.2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -392,24 +475,34 @@ version = "0.1.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "7be5f99f7d15578798f338f5433b6c432ea8037b" +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" uuid = 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SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -418,120 +511,77 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Flux]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "2b85cb85f5d71f05e41089a2446ac33b8e94ebed" +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "502d0232ec6430d40b6e5b57637333f32192592e" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.9" +version = "0.14.14" 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"82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.4.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -775,46 +847,46 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "ec8a9c9f0ecb1c687e34c1fda2699de4d054672a" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] +git-tree-sha1 = "5ea6acdd53a51d897672edb694e3cc2912f3f8a7" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.29" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.4.46" [[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.3" +version = "1.5.0" [[deps.JSON3]] -deps = ["Dates", "Mmap", "Parsers", "SnoopPrecompile", "StructTypes", "UUIDs"] -git-tree-sha1 = "84b10656a41ef564c39d2d477d7236966d2b5683" +deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] +git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.12.0" +version = "1.14.0" + + [deps.JSON3.extensions] + JSON3ArrowExt = ["ArrowTypes"] + + [deps.JSON3.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] -git-tree-sha1 = "a77b273f1ddec645d1b7c4fd5fb98c8f90ad10a5" +git-tree-sha1 = "fa6d0bcff8583bac20f1ffa708c3913ca605c611" uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" -version = "0.1.1" +version = "0.1.5" [[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "3.0.2+0" + +[[deps.JuliaNVTXCallbacks_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" +uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" +version = "0.2.1+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -822,11 +894,17 @@ git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.18" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -835,33 +913,42 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "e7e9184b0bf0158ac4e4aa9daf00041b5909bf1a" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "7c6650580b4c3169d9905858160db895bff6d2e2" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.14.0" +version = "6.6.1" +weakdeps = ["BFloat16s"] + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" [[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+0" +version = "0.0.29+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" +[[deps.LLVMLoopInfo]] +git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" +uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586" +version = "1.0.0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "ab9aa169d2160129beb241cb2750ca499b4e90e9" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.15.17" +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.15" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] @@ -875,60 +962,35 @@ version = "0.3.1" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - [[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+1" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" +version = "1.17.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] @@ -936,108 +998,153 @@ git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713" uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.4.0+0" -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +[[deps.LittleCMS_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"] +git-tree-sha1 = "110897e7db2d6836be22c18bffd9422218ee6284" +uuid = "d3a379c0-f9a3-5b72-a4c0-6bf4d2e8af0f" +version = "2.12.0+0" + [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "946607f84feb96220f480e0422d3484c49c00239" +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.19" +version = "0.3.27" + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.0" +version = "1.0.3" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.166" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" [[deps.MAT]] deps = ["BufferedStreams", "CodecZlib", "HDF5", "SparseArrays"] -git-tree-sha1 = 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"LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1283,15 +1417,9 @@ version = "0.1.4" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.7.2" - -[[deps.ProtoBuf]] -deps = ["Logging", "protoc_jll"] -git-tree-sha1 = "5bb5eb83db702376abe5fb2ef0739b08da3ab461" -uuid = "3349acd9-ac6a-5e09-bcdb-63829b23a429" -version = "0.11.5" +version = "1.10.0" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -1299,31 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uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "7a1a306b72cfa60634f03a911405f4e64d1b718b" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.0" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1338,9 +1460,13 @@ version = "0.3.2" [[deps.Ratios]] deps = ["Requires"] -git-tree-sha1 = "dc84268fe0e3335a62e315a3a7cf2afa7178a734" +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.3" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -1349,16 +1475,10 @@ uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" version = "0.1.0" [[deps.RecipesBase]] -deps = ["SnoopPrecompile"] -git-tree-sha1 = "18c35ed630d7229c5584b945641a73ca83fb5213" +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.2" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase", "SnoopPrecompile"] -git-tree-sha1 = "e974477be88cb5e3040009f3767611bc6357846f" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.11" +version = "1.3.4" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1371,12 +1491,6 @@ git-tree-sha1 = "4618ed0da7a251c7f92e869ae1a19c74a7d2a7f9" uuid = "dee08c22-ab7f-5625-9660-a9af2021b33f" version = "0.3.2" -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" - [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" @@ -1384,26 +1498,41 @@ uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" [[deps.Rotations]] -deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"] -git-tree-sha1 = "793b6ef92f9e96167ddbbd2d9685009e200eb84f" +deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"] +git-tree-sha1 = "2a0a5d8569f481ff8840e3b7c84bbf188db6a3fe" uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" -version = "1.3.3" +version = "1.7.0" +weakdeps = ["RecipesBase"] + + [deps.Rotations.extensions] + RotationsRecipesBaseExt = "RecipesBase" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "efd23b378ea5f2db53a55ae53d3133de4e080aa9" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.16" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1423,12 +1552,6 @@ git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" version = "0.1.0" -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - [[deps.SimpleBufferStream]] git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" @@ -1441,40 +1564,46 @@ uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.4" [[deps.SimpleWeightedGraphs]] -deps = ["Graphs", "LinearAlgebra", "Markdown", "SparseArrays", "Test"] -git-tree-sha1 = "a6f404cc44d3d3b28c793ec0eb59af709d827e4e" +deps = ["Graphs", "LinearAlgebra", "Markdown", "SparseArrays"] +git-tree-sha1 = "4b33e0e081a825dbfaf314decf58fa47e53d6acb" uuid = "47aef6b3-ad0c-573a-a1e2-d07658019622" -version = "1.2.1" +version = "1.4.0" [[deps.Sixel]] deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] -git-tree-sha1 = "8fb59825be681d451c246a795117f317ecbcaa28" +git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" -version = "0.1.2" - -[[deps.SnoopPrecompile]] -git-tree-sha1 = "f604441450a3c0569830946e5b33b78c928e1a85" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.1" +version = "0.1.3" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.0" +version = "1.2.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.3.1" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.SplittablesBase]] deps = ["Setfield", "Test"] @@ -1488,32 +1617,55 @@ git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.1" +[[deps.Static]] +deps = ["IfElse"] +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.8.10" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ffc098086f35909741f71ce21d03dadf0d2bfa76" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.11" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.0" +version = "1.4.2" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "f9af7f195fb13589dd2e2d57fdb401717d2eb1f6" +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.5.0" +version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.Strided]] deps = ["LinearAlgebra", "TupleTools"] @@ -1523,20 +1675,28 @@ version = "1.2.3" [[deps.StringEncodings]] deps = ["Libiconv_jll"] -git-tree-sha1 = "50ccd5ddb00d19392577902f0079267a72c5ab04" +git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" uuid = 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"UUIDs"] @@ -1544,10 +1704,19 @@ git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.10.0" +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1556,21 +1725,15 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", 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"JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" [[deps.ZipFile]] deps = ["Libdl", "Printf", "Zlib_jll"] @@ -1816,60 +1883,58 @@ version = "0.10.1" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+1" [[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.5+0" [[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "a6f1287943ac05fae56fa06049d1a7846dfbc65f" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "4ddb4470e47b0094c93055a3bcae799165cc68f1" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.51" +version = "0.6.69" -[[deps.ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" + [deps.Zygote.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +[[deps.libaec_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" +uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" +version = "1.1.2+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.8.0+1" -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +[[deps.libevent_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll"] +git-tree-sha1 = "f04ec6d9a186115fb38f858f05c0c4e1b7fc9dcb" +uuid = "1080aeaf-3a6a-583e-a51c-c537b09f60ec" +version = "2.1.13+1" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+1" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] @@ -1877,42 +1942,18 @@ git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" version = "1.10.3+0" -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" -[[deps.protoc_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "72308afa0aa106884e4e46aef64dfccb4071be66" -uuid = "c7845625-083e-5bbe-8504-b32d602b7110" -version = "3.21.4+1" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+0" +[[deps.prrte_jll]] +deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "PMIx_jll", "libevent_jll"] +git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0" +uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9" +version = "3.0.2+0" diff --git a/vision/vae_mnist/Project.toml b/vision/vae_mnist/Project.toml index d9a83b74..35a3f827 100644 --- a/vision/vae_mnist/Project.toml +++ b/vision/vae_mnist/Project.toml @@ -1,18 +1,15 @@ [deps] -BSON = "fbb218c0-5317-5bc6-957e-2ee96dd4b1f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" -DrWatson = "634d3b9d-ee7a-5ddf-bec9-22491ea816e1" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" ImageIO = "82e4d734-157c-48bb-816b-45c225c6df19" ImageMagick = "6218d12a-5da1-5696-b52f-db25d2ecc6d1" Images = "916415d5-f1e6-5110-898d-aaa5f9f070e0" +JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" MLDatasets = "eb30cadb-4394-5ae3-aed4-317e484a6458" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca" -TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [compat] -CUDA = "2.4, 3.12, 4" -Flux = "0.13.9, 0.14" +CUDA = "5" +Flux = "0.14.13" MLDatasets = "0.7" -julia = "1.6" +julia = "1.9" diff --git a/vision/vae_mnist/vae_mnist.jl b/vision/vae_mnist/vae_mnist.jl index 66ca5b44..9482e2da 100644 --- a/vision/vae_mnist/vae_mnist.jl +++ b/vision/vae_mnist/vae_mnist.jl @@ -4,173 +4,222 @@ # Diederik P Kingma, Max Welling # https://arxiv.org/abs/1312.6114 -using BSON -using CUDA -using DrWatson: struct2dict -using Flux -using Flux: @functor, chunk, DataLoader -using Flux.Losses: logitbinarycrossentropy -using Images -using Logging: with_logger -using MLDatasets -using ProgressMeter: Progress, next! -using TensorBoardLogger: TBLogger, tb_overwrite -using Random - -# load MNIST images and return loader -function get_data(batch_size) - xtrain, ytrain = MLDatasets.MNIST(split=:train)[:] - xtrain = reshape(xtrain, 28^2, :) - DataLoader((xtrain, ytrain), batchsize=batch_size, shuffle=true) -end +#===== PACKAGES =====# + +using Flux, MLDatasets, ProgressMeter, Random +using Images: Gray, save +using JLD2 # recommended way to save model state +using CUDA # to use a GPU, although this model does not require one + + +#===== MODEL =====# + +# The model has an encoder and a decoder. Our encoder doesn't fit any of the built-in Flux layers, +# so we define a new layer. At this point we don't commit to specific sizes `input_dim, latent_dim, hidden_dim`. + +# 1. Define a structure to contain the pieces: struct Encoder linear - μ - logσ + mean + logstd end -@functor Encoder - -Encoder(input_dim::Int, latent_dim::Int, hidden_dim::Int) = Encoder( - Dense(input_dim, hidden_dim, tanh), # linear - Dense(hidden_dim, latent_dim), # μ - Dense(hidden_dim, latent_dim), # logσ -) +# (Adding types `struct Encoder{A,B,C}; linear::A; ...` is generally good practice, +# but here produces no detectable speedup.) + +# 2. Tell Flux to look for parameters inside this struct: +Flux.@layer :expand Encoder +# 3. Make the struct callable to define the forward pass: function (encoder::Encoder)(x) h = encoder.linear(x) - encoder.μ(h), encoder.logσ(h) + encoder.mean(h), encoder.logstd(h) # returns a Tuple end -Decoder(input_dim::Int, latent_dim::Int, hidden_dim::Int) = Chain( - Dense(latent_dim, hidden_dim, tanh), - Dense(hidden_dim, input_dim) +# 4. Write a constructor method which initialises given the sizes: +Encoder(input_dim::Int, latent_dim::Int, hidden_dim::Int) = Encoder( + Dense(input_dim => hidden_dim, tanh), # linear + Dense(hidden_dim => latent_dim), # μ + Dense(hidden_dim => latent_dim), # logσ ) -function reconstuct(encoder, decoder, x, device) - μ, logσ = encoder(x) - z = μ + device(randn(Float32, size(logσ))) .* exp.(logσ) - μ, logσ, decoder(z) +# The decoder is just a multi-layer perceptron, here's a function which constructs it +# using the same sizes as Encoder: + +make_decoder(input_dim::Int, latent_dim::Int, hidden_dim::Int) = Chain( + Dense(latent_dim => hidden_dim, tanh), + Dense(hidden_dim => input_dim), +) + +# Here is how the encoded and decoder are used: The encoder produces mean & std, +# which are used to generate random y, which is the input to the decoder. +# Type restrictions `enc::Encoder, dec::Chain` are basically documentation here, +# and ensure we can't mix up the order of arguments. + +function reconstuct(enc::Encoder, dec::Chain, x::AbstractArray) + μ, logσ = enc(x) + y = μ + exp.(logσ) .* randn.(Float32) # randn.() is a new random number at every entry + z = dec(y) + (; μ, logσ, z) # returns a NamedTuple end -function model_loss(encoder, decoder, λ, x, device) - μ, logσ, decoder_z = reconstuct(encoder, decoder, x, device) +function model_loss(enc::Encoder, dec::Chain, x::AbstractArray) + μ, logσ, z = reconstuct(enc, dec, x) len = size(x)[end] + # KL-divergence - kl_q_p = 0.5f0 * sum(@. (exp(2f0 * logσ) + μ^2 -1f0 - 2f0 * logσ)) / len + kl_q_p = sum(@.(exp(2*logσ) + μ^2 - 1 - 2*logσ)) / (2*len) + + logp_x_z = -Flux.logitbinarycrossentropy(z, x, agg=sum) / len - logp_x_z = -logitbinarycrossentropy(decoder_z, x, agg=sum) / len - # L2 regularization - reg = λ * sum(x->sum(x.^2), Flux.params(decoder)) + # # L2 regularization + # reg = l2_reg/2 * sum(x->sum(x.^2), Flux.params(decoder)) - -logp_x_z + kl_q_p + reg + -logp_x_z + kl_q_p # + reg end -function convert_to_image(x, y_size) - Gray.(permutedims(vcat(reshape.(chunk(x |> cpu, y_size), 28, :)...), (2, 1))) +# We're going to add L2 regularisation, to this loss, but will do this efficiently +# by using WeightDecay during training, rather than adding an explicit penalty to the loss. + + +#===== DATA =====# + +# Calling MLDatasets.MNIST() will dowload the dataset if necessary, +# and return a struct containing it. +# It takes a few seconds to read from disk each time, so do this once: + +train_data = MLDatasets.MNIST() # i.e. split=:train +test_data = MLDatasets.MNIST(split=:test) + +# train_data.features is a 28×28×60000 Array{Float32, 3} of the images. +# train_data.targets has the labels, but we won't use those here. + +# We need a 2D array for our model, each column of which is one image. Let's reshape now: + +train_matrix = reshape(train_data.features, 28^2, :); + +# We're going to save PNG files showing many images as small tiles. Here's a function +# which assembles them into a given number of rows: + +function image_tiles(x::AbstractMatrix, n_rows::Int) + rows = Flux.chunk(x |> cpu, n_rows) + tmp = reshape.(rows, 28, :) + Gray.(permutedims(vcat(tmp...))) end -# arguments for the `train` function -Base.@kwdef mutable struct Args - η = 1f-3 # learning rate - λ = 0.01f0 # regularization paramater - batch_size = 128 # batch size - sample_size = 10 # sampling size for output - epochs = 20 # number of epochs - seed = 0 # random seed - cuda = true # use GPU - input_dim = 28^2 # image size - latent_dim = 2 # latent dimension - hidden_dim = 500 # hidden dimension - verbose_freq = 10 # logging for every verbose_freq iterations - tblogger = false # log training with tensorboard - save_path = "output" # results path +image_tiles(train_matrix[:, 1:6], 2); # 84×56 Array{Gray{Float32},2} + + +#===== TRAINING =====# + +# Let's collect all the ... + +args = (; + # about training: + learn_rate = 0.001, # learning rate + l2_reg = 0.02, # regularization paramater + epochs = 20, + batch_size = 128, + + # about the model: + device = gpu, # this is ignored if you don't have a GPU + seed = 0, # set to >0 to always use the same random seed + input_dim = 28^2, # image size, standard MNIST + latent_dim = 2, # latent dimension of encoding + hidden_dim = 500, # hidden dimension within both encoder and decoder + + # saved output: + sample_sqrt = 10, # make sample_sqrt^2 outputs at a time + save_path = "output", # images will be saved as e.g. "output/original.png" +) + + +# Initialise the model, and move to GPU if using one: + +if args.seed > 0 + Random.seed!(args.seed) end +encoder = Encoder(args.input_dim, args.latent_dim, args.hidden_dim) |> args.device +decoder = make_decoder(args.input_dim, args.latent_dim, args.hidden_dim) |> args.device -function train(; kws...) - # load hyperparamters - args = Args(; kws...) - args.seed > 0 && Random.seed!(args.seed) - - # GPU config - if args.cuda && CUDA.has_cuda() - device = gpu - @info "Training on GPU" - else - device = cpu - @info "Training on CPU" - end +# Initialise the optimiser state -- Adam remembers some momenta between steps. +# We add L2 regularisation only to the decoder... - # load MNIST images - loader = get_data(args.batch_size) - - # initialize encoder and decoder - encoder = Encoder(args.input_dim, args.latent_dim, args.hidden_dim) |> device - decoder = Decoder(args.input_dim, args.latent_dim, args.hidden_dim) |> device +opt_enc = Flux.setup(Adam(args.learn_rate), encoder) - # ADAM optimizer - opt_enc = Flux.setup(Adam(args.η), encoder) - opt_dec = Flux.setup(Adam(args.η), decoder) +rule_dec = OptimiserChain(WeightDecay(args.l2_reg), Adam(args.learn_rate)) +opt_dec = Flux.setup(rule_dec, decoder) - !ispath(args.save_path) && mkpath(args.save_path) +# Load training data. +# Note that `DataLoader(...) |> gpu` will move one batch at a time to the GPU, +# and that `shuffle=true` re-shuffles each epoch. - # logging by TensorBoard.jl - if args.tblogger - tblogger = TBLogger(args.save_path, tb_overwrite) - end +loader = Flux.DataLoader(train_matrix; batchsize=args.batch_size, shuffle=true) |> args.device - # fixed input - original, _ = first(get_data(args.sample_size^2)) - original = original |> device - image = convert_to_image(original, args.sample_size) - image_path = joinpath(args.save_path, "original.png") - save(image_path, image) - # training - train_steps = 0 - @info "Start Training, total $(args.epochs) epochs" - for epoch = 1:args.epochs - @info "Epoch $(epoch)" - progress = Progress(length(loader)) - - for (x, _) in loader - x_dev = x |> device - loss, back = Flux.pullback(encoder, decoder) do enc, dec - model_loss(enc, dec, args.λ, x_dev, device) - end - grad_enc, grad_dec = back(1f0) - Flux.update!(opt_enc, encoder, grad_enc) - Flux.update!(opt_dec, decoder, grad_dec) - # progress meter - next!(progress; showvalues=[(:loss, loss)]) - - # logging with TensorBoard - if args.tblogger && train_steps % args.verbose_freq == 0 - with_logger(tblogger) do - @info "train" loss=loss - end - end - - train_steps += 1 - end - # save image - _, _, rec_original = reconstuct(encoder, decoder, original, device) - rec_original = sigmoid.(rec_original) - image = convert_to_image(rec_original, args.sample_size) - image_path = joinpath(args.save_path, "epoch_$(epoch).png") - save(image_path, image) - @info "Image saved: $(image_path)" - end +# fixed input +original = train_matrix[:, 1:args.sample_sqrt^2] |> args.device; +image_path = joinpath(args.save_path, "original.png") +save(image_path, image_tiles(original, args.sample_sqrt)) + + +# Main training loop + +for epoch = 1:args.epochs + println("Starting epoch $epoch of ", args.epochs) + progress = ProgressMeter.Progress(length(loader)) - # save model - model_path = joinpath(args.save_path, "model.bson") - let encoder = cpu(encoder), decoder = cpu(decoder), args=struct2dict(args) - BSON.@save model_path encoder decoder args - @info "Model saved: $(model_path)" + for x in loader + loss, (grad_enc, grad_dec, _) = Flux.withgradient(model_loss, encoder, decoder, x) + Flux.update!(opt_enc, encoder, grad_enc) + Flux.update!(opt_dec, decoder, grad_dec) + + # Fancy progress meter, printing the loss as we go along: + ProgressMeter.next!(progress; showvalues=[(:loss, round(loss, sigdigits=3))]) end -end -if abspath(PROGRAM_FILE) == @__FILE__ - train() + # Once per epoch, we save the image + _, _, rec_original = reconstuct(encoder, decoder, original) + rec_original = sigmoid.(rec_original) + + image = image_tiles(rec_original, args.sample_sqrt) + image_path = joinpath(args.save_path, "epoch_$(epoch).png") + save(image_path, image) + println("Image saved: ", image_path) end + +# Save the fully trained model's state, after moving it off the GPU: + +encoder_state = Flux.state(encoder) |> cpu +decoder_state = Flux.state(decoder) |> cpu +model_path = joinpath(args.save_path, "model.jld2") +JLD2.jldsave(model_path; encoder_state, decoder_state, args) +@info "Model saved!" model_path + + +#===== LOADING =====# + +# First we load args, for e.g. the hidden dimensions used, then we re-build the model: +args2 = JLD2.load("output/model.jld2", "args") +enc2 = Encoder(args2.input_dim, args2.latent_dim, args2.hidden_dim) +dec2 = make_decoder(args2.input_dim, args2.latent_dim, args2.hidden_dim) + +# Check that the new model runs but produces junk: +_, _, rec_original = reconstuct(enc2, dec2, original |> cpu) +image = image_tiles(sigmoid.(rec_original), args.sample_sqrt) +save(joinpath(args.save_path, "untrained.png"), image) + +# Now load the model state into this new model: +enc_st_2 = JLD2.load("output/model.jld2", "encoder_state") +Flux.loadmodel!(enc2, enc_st_2) +dec_st_2 = JLD2.load("output/model.jld2", "decoder_state") +Flux.loadmodel!(dec2, dec_st_2) + +# Check that the model now works: +_, _, rec_original = reconstuct(enc2, dec2, original |> cpu) +image = image_tiles(sigmoid.(rec_original), args.sample_sqrt) +save(joinpath(args.save_path, "reloaded.png"), image) + + +#===== THE END =====#