From 6c5bbf263afc6aa76998ae02ae89836123b8341e Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Mon, 29 Apr 2019 15:31:49 -0500
Subject: [PATCH 01/36] Finish initial implementation of the quasielastic cross
 section for the CBF spectral function model

---
 config/CBFSpectFuncQELPXSec.xml               |  55 ++++
 config/LwlynSmithFFEM.xml                     |  43 +++
 config/SpectralFunc.xml                       |   2 +-
 config/master_config.xml                      |   2 +
 src/Framework/Conventions/KinePhaseSpace.h    |   4 +-
 src/Physics/NuclearState/SpectralFunc.cxx     |  22 +-
 .../XSection/CBFSpectFuncQELPXSec.cxx         | 294 ++++++++++++++++++
 .../XSection/CBFSpectFuncQELPXSec.h           |  77 +++++
 .../XSection/FreeNucleonTensor.cxx            | 201 ++++++++++++
 .../QuasiElastic/XSection/FreeNucleonTensor.h |  79 +++++
 .../QuasiElastic/XSection/LeptonTensor.cxx    |  69 ++++
 .../QuasiElastic/XSection/LeptonTensor.h      |  65 ++++
 src/Physics/QuasiElastic/XSection/LinkDef.h   |   6 +
 .../QuasiElastic/XSection/LwlynSmithFFEM.cxx  |  54 ++++
 .../QuasiElastic/XSection/LwlynSmithFFEM.h    |  51 +++
 .../QuasiElastic/XSection/QELFormFactors.cxx  |   2 +-
 .../QuasiElastic/XSection/QELFormFactors.h    |   8 +
 .../XSection/QELFormFactorsModelI.h           |  13 +-
 .../XSection/Rank2LorentzTensorI.cxx          |  64 ++++
 .../XSection/Rank2LorentzTensorI.h            | 126 ++++++++
 20 files changed, 1222 insertions(+), 15 deletions(-)
 create mode 100644 config/CBFSpectFuncQELPXSec.xml
 create mode 100644 config/LwlynSmithFFEM.xml
 create mode 100644 src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h
 create mode 100644 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h
 create mode 100644 src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/LeptonTensor.h
 create mode 100644 src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.h
 create mode 100644 src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h

diff --git a/config/CBFSpectFuncQELPXSec.xml b/config/CBFSpectFuncQELPXSec.xml
new file mode 100644
index 000000000..1e051e9b0
--- /dev/null
+++ b/config/CBFSpectFuncQELPXSec.xml
@@ -0,0 +1,55 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<alg_conf>
+
+<!--
+Configuration for the CBF spectral function QEL differential xsec algorithm.
+
+Configurable Parameters:
+.....................................................................................................
+Name               Type     Optional   Comment                          Default
+.....................................................................................................
+CCFormFactorsAlg   alg      No         QEL-CC form factors algorithm
+NCFormFactorsAlg   alg      No         QEL-NC form factors algorithm
+EMFormFactorsAlg   alg      No         QEL-EM form factors algorithm
+XSec-Integrator    alg      No
+CabibboAngle       double   No         Cabibbo angle                    CommonParam[CKM]
+QEL-CC-XSecScale   double   Yes        Scaling factor                   GPL value
+
+.....................................................................................................
+Parameters needed when Integrating with this model to generate splines:
+...........................................................................................................................
+Name                                 Type     Optional   Comment                                              Default
+...........................................................................................................................
+IntegralNuclearModel                 alg      No
+IntegralNucleonBindingMode           alg      No
+-->
+
+  <param_set name="Default">
+
+    <param type="string"  name="CommonParam"> CKM </param>
+
+    <param type="double" name="QEL-CC-XSecScale"> 1.000 </param>
+
+    <param type="alg"  name="XSec-Integrator"> genie::NewQELXSec/Default </param>
+    <param type="alg"  name="IntegralNuclearModel"> genie::SpectralFunc/Default </param>
+    <param type="string" name="IntegralNucleonBindingMode"> kUseNuclearModel </param>
+
+    <param type="alg"  name="PauliBlockerAlg"> genie::PauliBlocker/Default </param>
+
+     <param type="alg"  name="NCFormFactorsAlg"> genie::LwlynSmithFFNC/Default </param>
+     <param type="alg"  name="EMFormFactorsAlg"> genie::LwlynSmithFFEM/Dipole </param>
+
+  </param_set>
+
+
+  <param_set name="Dipole">
+     <param type="alg"  name="CCFormFactorsAlg"> genie::LwlynSmithFFCC/Dipole </param>
+  </param_set>
+
+
+  <param_set name="ZExp">
+     <param type="alg"  name="CCFormFactorsAlg"> genie::LwlynSmithFFCC/ZExp </param>
+  </param_set>
+
+</alg_conf>
diff --git a/config/LwlynSmithFFEM.xml b/config/LwlynSmithFFEM.xml
new file mode 100644
index 000000000..beb4e4dc0
--- /dev/null
+++ b/config/LwlynSmithFFEM.xml
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<alg_conf>
+
+<!--
+Configuration sets for Llewellyn-Smith QEL EM form factors
+
+Configurable Parameters:
+..........................................................................................................
+Name                          Type     Optional   Comment                     Default
+..........................................................................................................
+ElasticFormFactorsModel       alg      No         Elastic form factors model  CommonParam[ElasticFF]
+UseElFFTransverseEnhancement  bool     No                                     CommonParam[ElasticFF]
+TransverseEnhancement         alg      No         TransverseEnhancement model CommonParam[ElasticFF]
+AxialFormFactorModel          alg      No         Axial form factor model     
+AnomMagnMoment-P              double   No                                     CommonParam[MagnMoments]
+AnomMagnMoment-N              double   No                                     CommonParam[MagnMoments]
+WeinbergAngle                 double   No         Weinberg angle              CommonParam[WeakInt]
+SU3-D                         double   No                                     CommonParam[StrongInt]
+SU3-F                         double   No                                     CommonParam[StrongInt]
+-->
+
+  <param_set name="Default"> 
+    <param type="string" name="CommonParam"> WeakInt,MagnMoments,StrongInt,ElasticFF </param>
+  </param_set>
+
+  <param_set name="Dipole"> 
+     <param type="alg" name="AxialFormFactorModel"> genie::DipoleAxialFormFactorModel/Default </param>
+
+  </param_set>
+
+  <param_set name="ZExp"> 
+     <param type="alg" name="AxialFormFactorModel"> genie::ZExpAxialFormFactorModel/Default </param>
+
+  </param_set>
+
+  <param_set name="RunningMA"> 
+     <param type="alg" name="AxialFormFactorModel"> genie::KuzminNaumov2016AxialFormFactorModel/Default </param>
+
+  </param_set>
+
+
+</alg_conf>
diff --git a/config/SpectralFunc.xml b/config/SpectralFunc.xml
index bf66b27ce..71330fdf3 100644
--- a/config/SpectralFunc.xml
+++ b/config/SpectralFunc.xml
@@ -3,7 +3,7 @@
 <alg_conf>
 
 <!--
-Configuration for the SpectralFunc NuclerModelI implementation
+Configuration for the SpectralFunc NuclearModelI implementation
 
 Configurable Parameters:
 .........................................................................................
diff --git a/config/master_config.xml b/config/master_config.xml
index e6de86fc3..925b8d91f 100644
--- a/config/master_config.xml
+++ b/config/master_config.xml
@@ -107,6 +107,7 @@
    <config alg="genie::LwlynSmithFFDeltaS">                      LwlynSmithFFDeltaS.xml                      </config>
    <config alg="genie::TransverseEnhancementFFModel">            TransverseEnhancementFFModel.xml            </config>
    <config alg="genie::LwlynSmithFFNC">                          LwlynSmithFFNC.xml                          </config>
+   <config alg="genie::LwlynSmithFFEM">                          LwlynSmithFFEM.xml                          </config>
    <config alg="genie::QPMDISStrucFunc">                         QPMDISStrucFunc.xml                         </config>
    <config alg="genie::BYStrucFunc">                             BYStrucFunc.xml                             </config>
    <config alg="genie::RSHelicityAmplModelCC">                   RSHelicityAmplModelCC.xml                   </config>
@@ -141,6 +142,7 @@
    <config alg="genie::LwlynSmithQELCCPXSec">               LwlynSmithQELCCPXSec.xml               </config>
    <config alg="genie::NievesQELCCPXSec">                   NievesQELCCPXSec.xml                   </config>
    <config alg="genie::SmithMonizQELCCPXSec">               SmithMonizQELCCPXSec.xml               </config>
+   <config alg="genie::CBFSpectFuncQELPXSec">               CBFSpectFuncQELPXSec.xml               </config>
    <config alg="genie::QPMDMDISPXSec">                      QPMDMDISPXSec.xml                      </config>
    <config alg="genie::QPMDISPXSec">                        QPMDISPXSec.xml                        </config>
    <config alg="genie::KNOTunedQPMDISPXSec">                KNOTunedQPMDISPXSec.xml                </config>
diff --git a/src/Framework/Conventions/KinePhaseSpace.h b/src/Framework/Conventions/KinePhaseSpace.h
index 1653618ad..482fa7177 100644
--- a/src/Framework/Conventions/KinePhaseSpace.h
+++ b/src/Framework/Conventions/KinePhaseSpace.h
@@ -66,7 +66,8 @@ typedef enum EKinePhaseSpace {
   kPSQELEvGen,// Phase space used by genie::QELEventGenerator for sampling kinematic variables
               // TODO: rename this value when the correct variables are identified
   kPSTAfE,
-  kPSEgTlOgfE
+  kPSEgTlOgfE,
+  kPSp3NiEOlEl
 } KinePhaseSpace_t;
 
 class KinePhaseSpace
@@ -120,6 +121,7 @@ class KinePhaseSpace
       // TODO: update this string when the appropriate kinematic variables are known
       case(kPSQELEvGen)   : return "<QELEvGen>"; break;
       case(kPSTAfE)       : return "<{TA}|E>";   break;
+      case(kPSp3NiEOlEl) : return "<p3Ni,E_removal,Omega_l,E_l|E>"; break;
     }
     return "** Undefined kinematic phase space **";
   }
diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index 4b1734565..6f8602b0a 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -5,7 +5,7 @@
  or see $GENIE/LICENSE
 
  Author: Costas Andreopoulos <costas.andreopoulos \at stfc.ac.uk>
-         University of Liverpool & STFC Rutherford Appleton Lab 
+         University of Liverpool & STFC Rutherford Appleton Lab
 
  For the class documentation see the corresponding header file.
 
@@ -15,9 +15,9 @@
 */
 //____________________________________________________________________________
 
-#include <TSystem.h>
-#include <TNtupleD.h>
-#include <TGraph2D.h>
+#include "TSystem.h"
+#include "TNtupleD.h"
+#include "TGraph2D.h"
 
 #include "Framework/Conventions/Constants.h"
 #include "Framework/Conventions/Controls.h"
@@ -72,15 +72,15 @@ bool SpectralFunc::GenerateNucleon(const Target & target) const
   double dk = kmax - kmin;
   double dw = wmax - wmin;
 
-  LOG("SpectralFunc", pINFO) << "Momentum range = ["   << kmin << ", " << kmax << "]"; 
+  LOG("SpectralFunc", pINFO) << "Momentum range = ["   << kmin << ", " << kmax << "]";
   LOG("SpectralFunc", pINFO) << "Rmv energy range = [" << wmin << ", " << wmax << "]";
 
   RandomGen * rnd = RandomGen::Instance();
 
   unsigned int niter = 0;
   while(1) {
-    if(niter > kRjMaxIterations) {
-       LOG("SpectralFunc", pWARN) 
+    if (niter > 10000*kRjMaxIterations) {
+       LOG("SpectralFunc", pWARN)
            << "Couldn't generate a hit nucleon after " << niter << " iterations";
        return false;
     }
@@ -95,9 +95,9 @@ bool SpectralFunc::GenerateNucleon(const Target & target) const
     double prob  = this->Prob(kc,wc, target);
     double probg = probmax * rnd->RndGen().Rndm();
     bool accept = (probg < prob);
-    if(!accept) continue;
+    if ( !accept ) continue;
 
-    LOG("SpectralFunc", pINFO) << "|p,nucleon| = " << kc; 
+    LOG("SpectralFunc", pINFO) << "|p,nucleon| = " << kc;
     LOG("SpectralFunc", pINFO) << "|w,nucleon| = " << wc;
 
     // generate momentum components
@@ -146,7 +146,7 @@ void SpectralFunc::LoadConfig(void)
   LOG("SpectralFunc", pDEBUG) << "Loading Benhar et al. spectral functions";
 
   string data_dir =
-        string(gSystem->Getenv("GENIE")) + 
+        string(gSystem->Getenv("GENIE")) +
         string("/data/evgen/nucl/spectral_functions/");
   string c12file  = data_dir + "benhar-sf-12c.data";
   string fe56file = data_dir + "benhar-sf-56fe.data";
@@ -198,7 +198,7 @@ TGraph2D * SpectralFunc::SelectSpectralFunction(const Target & t) const
   if      (pdgc == kPdgTgtC12)  sf = fSfC12;
   else if (pdgc == kPdgTgtFe56) sf = fSfFe56;
   else {
-    LOG("SpectralFunc", pERROR) 
+    LOG("SpectralFunc", pERROR)
      << "** The spectral function for target " << pdgc << " isn't available";
   }
   if(!sf) {
diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
new file mode 100644
index 000000000..f919df6c0
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
@@ -0,0 +1,294 @@
+//____________________________________________________________________________
+/*
+ Copyright (c) 2003-2019, The GENIE Collaboration
+ For the full text of the license visit http://copyright.genie-mc.org
+ or see $GENIE/LICENSE
+
+ Author: Steven Gardiner <gardiner \at fnal.gov>
+         Fermi National Acclerator Laboratory
+
+ For the class documentation see the corresponding header file.
+
+*/
+//____________________________________________________________________________
+
+#include "TMath.h"
+#include "TVector3.h"
+#include "TLorentzVector.h"
+#include "Math/IFunction.h"
+#include "Math/Integrator.h"
+
+#include "Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h"
+#include "Physics/XSectionIntegration/XSecIntegratorI.h"
+#include "Physics/QuasiElastic/XSection/QELFormFactors.h"
+#include "Physics/QuasiElastic/XSection/QELFormFactorsModelI.h"
+#include "Physics/QuasiElastic/XSection/QELUtils.h"
+#include "Framework/Conventions/Constants.h"
+#include "Framework/Conventions/RefFrame.h"
+#include "Framework/Conventions/KineVar.h"
+#include "Framework/Conventions/Units.h"
+#include "Framework/Messenger/Messenger.h"
+#include "Framework/ParticleData/PDGCodes.h"
+#include "Framework/ParticleData/PDGLibrary.h"
+#include "Framework/ParticleData/PDGUtils.h"
+#include "Framework/Utils/KineUtils.h"
+#include "Framework/Utils/PrintUtils.h"
+#include "Physics/NuclearState/NuclearModelI.h"
+
+using namespace genie;
+using namespace genie::constants;
+using namespace genie::controls;
+using namespace genie::utils;
+
+//____________________________________________________________________________
+CBFSpectFuncQELPXSec::CBFSpectFuncQELPXSec() :
+XSecAlgorithmI("genie::CBFSpectFuncQELPXSec")
+{
+
+}
+//____________________________________________________________________________
+CBFSpectFuncQELPXSec::CBFSpectFuncQELPXSec(string config) :
+XSecAlgorithmI("genie::CBFSpectFuncQELPXSec", config)
+{
+
+}
+//____________________________________________________________________________
+CBFSpectFuncQELPXSec::~CBFSpectFuncQELPXSec()
+{
+
+}
+//____________________________________________________________________________
+double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
+  KinePhaseSpace_t kps) const
+{
+  if ( !this->ValidProcess(interaction) ) return 0.;
+  if ( !this->ValidKinematics(interaction) ) return 0.;
+
+  // Get kinematics and init-state parameters
+  const Kinematics&   kinematics = interaction->Kine();
+  const InitialState& init_state = interaction->InitState();
+  const Target& target = init_state.Tgt();
+
+  TLorentzVector* temp_probeP4 = init_state.GetProbeP4( kRfLab );
+  TLorentzVector probeP4 = *temp_probeP4;
+  delete temp_probeP4;
+  double E_probe = probeP4.E();
+
+  const TLorentzVector& p4Ni = target.HitNucP4();
+  double mNi = target.HitNucMass(); // on-shell initial hit nucleon mass
+  double pNi = p4Ni.P();
+  double E_NiOnShell = std::sqrt(pNi*pNi + mNi*mNi);
+  TLorentzVector p4NiOnShell = TLorentzVector(p4Ni.Vect(), E_NiOnShell);
+  double epsilon_B = E_NiOnShell - p4Ni.E();
+
+  const TLorentzVector& lepP4 = kinematics.FSLeptonP4();
+  double E_lep = lepP4.E();
+
+  const TLorentzVector& p4Nf = kinematics.HadSystP4();
+  double E_Nf = p4Nf.E();
+
+  // Start xsec calculation with overall phase space factor and
+  // scaling factor from XML
+  double xsec = fXSecScale / (4.*kPi*kPi * E_probe * E_NiOnShell
+    * E_lep * E_Nf);
+
+  // If we're dealing with a nuclear target, then apply Pauli blocking as
+  // needed
+  if ( target.IsNucleus() && !interaction->TestBit(kIAssumeFreeNucleon) ) {
+    double kF = fPauliBlocker->GetFermiMomentum(target,
+      interaction->RecoilNucleonPdg(), target.HitNucPosition());
+    if ( p4Nf.P() < kF ) return 0.;
+
+    // Scale cross section by the number of active nucleons
+    int hit_nuc_pdg = target.HitNucPdg();
+    // Number of active nucleons in the target
+    int num_active = pdg::IsProton(hit_nuc_pdg) ? target.Z() : target.N();
+
+    xsec *= num_active;
+  }
+
+  // Compute form factors using Q2tilde (the effective Q2 value after
+  // binding energy corrections)
+  TLorentzVector qP4 = probeP4 - lepP4;
+  TLorentzVector qTildeP4 = qP4;
+  qTildeP4.SetE( qP4.E() - epsilon_B );
+
+  double Q2 = -1. * qP4.M2();
+  double Q2tilde = -1. * qTildeP4.M2();
+
+  // Make sure Q2 is physical
+  if ( Q2 <= 0. ) {
+    LOG("CBFSpectFunc", pWARN) << "Q2 <= 0, returning xsec = 0";
+    return 0.;
+  }
+
+  // Get the correct couplings and form factors model for the current
+  // interaction
+  double coupling_factor = 1.;
+  const genie::ProcessInfo& proc_info = interaction->ProcInfo();
+  if ( proc_info.IsWeakCC() ) {
+    coupling_factor = kGF2 * fCos8c2 / 2.;
+    fFormFactors.SetModel( fCCFormFactorsModel );
+  }
+  else if ( proc_info.IsWeakNC() ) {
+    coupling_factor = kGF2 / 2.;
+    fFormFactors.SetModel( fNCFormFactorsModel );
+  }
+  else if ( proc_info.IsEM() ) {
+    coupling_factor = 16. * kPi * kPi * kAem2 / ( Q2*Q2 );
+    fFormFactors.SetModel( fEMFormFactorsModel );
+  }
+  else {
+    LOG("CBFSpectFunc", pERROR) << "Unrecognized process type encountered"
+      << " in genie::CBFSpecFuncQELPXSec::XSec()";
+    return 0.;
+  }
+
+  // Apply the coupling factor to the differential cross section
+  xsec *= coupling_factor;
+
+  // The corrected energy transfer qTilde0 needs to be nonnegative
+  // to enforce energy conservation
+  if ( qTildeP4.E() < 0. ) {
+    LOG("CBFSpectFunc", pWARN) << "q0Tilde < 0," << " returning xsec = 0";
+    return 0.;
+  }
+
+  // Set Q2 to Q2tilde while computing form factors
+  interaction->KinePtr()->SetQ2( Q2tilde );
+
+  // Evaluate the form factors
+  fFormFactors.Calculate( interaction );
+
+  // Now that we've calculated them, store the true Q2 value
+  interaction->KinePtr()->SetQ2( Q2 );
+
+  // Compute the tensor contraction
+  LeptonTensor L_munu( *interaction );
+  FreeNucleonTensor ATilde_munu( *interaction, fFormFactors );
+
+  std::complex<double> contraction = L_munu * ATilde_munu;
+
+  if ( std::abs(contraction.imag()) > kASmallNum ) {
+    LOG("CBFSpectFunc", pWARN) << "Tensor contraction has nonvanishing"
+      << " imaginary part!";
+  }
+
+  // Apply the tensor contraction to the cross section
+  xsec *= contraction.real();
+
+  // Multiply by the analytic solution of the energy-conserving delta
+  // function (if needed for the kPSQELEvGen phase space) or by
+  // the Jacobian for the kPSp3NiEOlEl phase space otherwise.
+  if ( kps == kPSQELEvGen ) {
+    xsec *= genie::utils::EnergyDeltaFunctionSolutionQEL( *interaction );
+  }
+  else {
+    xsec *= lepP4.P() * lepP4.E();
+  }
+
+  // Check whether variable tranformation is needed
+  if ( kps != kPSQELEvGen && kps != kPSp3NiEOlEl ) {
+    // Compute the appropriate Jacobian for transformation to the requested
+    // phase space
+    double J = utils::kinematics::Jacobian(interaction, kPSp3NiEOlEl, kps);
+    xsec *= J;
+  }
+
+  return xsec;
+}
+//____________________________________________________________________________
+double CBFSpectFuncQELPXSec::Integral(const Interaction* in) const
+{
+  // Intended for use with genie::NewQELXSec, which is smart
+  // enough to handle free nucleon vs. nuclear targets, different
+  // nuclear models, etc.
+  return fXSecIntegrator->Integrate(this, in);
+}
+//____________________________________________________________________________
+bool CBFSpectFuncQELPXSec::ValidProcess(const Interaction* interaction) const
+{
+  if ( interaction->TestBit(kISkipProcessChk) ) return true;
+
+  const InitialState& init_state = interaction->InitState();
+  const ProcessInfo&  proc_info  = interaction->ProcInfo();
+
+  if ( !proc_info.IsQuasiElastic() ) return false;
+
+  if ( proc_info.IsEM() || proc_info.IsWeakNC() ) return true;
+
+  // For weak CC interactions, check that the hit nucleon "works"
+  else if ( proc_info.IsWeakCC() ) {
+    int nucleon_pdg = init_state.Tgt().HitNucPdg();
+    int probe_pdg = init_state.ProbePdg();
+
+    if ( pdg::IsNeutron(nucleon_pdg) && pdg::IsNeutrino(probe_pdg) ) {
+      return true;
+    }
+    else if ( pdg::IsProton(nucleon_pdg) && pdg::IsAntiNeutrino(probe_pdg) ) {
+      return true;
+    }
+    else return false;
+  }
+
+  return false;
+}
+//____________________________________________________________________________
+void CBFSpectFuncQELPXSec::Configure(const Registry& config)
+{
+  Algorithm::Configure(config);
+  this->LoadConfig();
+}
+//____________________________________________________________________________
+void CBFSpectFuncQELPXSec::Configure(std::string config)
+{
+  Algorithm::Configure(config);
+  this->LoadConfig();
+}
+//____________________________________________________________________________
+void CBFSpectFuncQELPXSec::LoadConfig(void)
+{
+  double thc;
+  GetParam( "CabibboAngle", thc ) ;
+  fCos8c2 = TMath::Power(TMath::Cos(thc), 2);
+
+  // cross section scaling factor
+  GetParam( "QEL-CC-XSecScale", fXSecScale ) ;
+
+  // load QEL form factors models
+  fCCFormFactorsModel = dynamic_cast<const QELFormFactorsModelI*>(
+    this->SubAlg("CCFormFactorsAlg") );
+  assert( fCCFormFactorsModel );
+
+  fNCFormFactorsModel = dynamic_cast<const QELFormFactorsModelI*>(
+    this->SubAlg("NCFormFactorsAlg") );
+  assert( fNCFormFactorsModel );
+
+  fEMFormFactorsModel = dynamic_cast<const QELFormFactorsModelI*>(
+    this->SubAlg("EMFormFactorsAlg") );
+  assert( fEMFormFactorsModel );
+
+  // Attach CC model for now. This will be updated later.
+  fFormFactors.SetModel( fCCFormFactorsModel );
+
+  // load xsec integrator
+  fXSecIntegrator = dynamic_cast<const XSecIntegratorI*>(
+    this->SubAlg("XSec-Integrator") );
+  assert(fXSecIntegrator);
+
+  // get nuclear model
+  fNuclModel = dynamic_cast<const NuclearModelI*>(
+    this->SubAlg("IntegralNuclearModel") );
+  assert(fNuclModel);
+
+  // get the algorithm ID for the PauliBlocker
+  RgAlg pauliBlockID;
+  GetParamDef( "PauliBlockerAlg", pauliBlockID,
+    RgAlg("genie::PauliBlocker", "Default") );
+  AlgId pbID = AlgId( pauliBlockID );
+
+  AlgFactory* algf = AlgFactory::Instance();
+  fPauliBlocker = dynamic_cast<const PauliBlocker*>(
+    algf->GetAlgorithm(pbID) );
+  assert( fPauliBlocker );
+}
diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h
new file mode 100644
index 000000000..f26b22ebb
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h
@@ -0,0 +1,77 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::CBFSpectFuncQELPXSec
+
+\brief    Computes quasielastic neutrino-nucleus differential cross sections
+          using a contraction of leptonic and hadronic tensors. Intended for
+          use with a spectral function nuclear model.
+          Is a concrete implementation of the XSecAlgorithmI interface. \n
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Acclerator Laboratory
+
+\created  March 25, 2019
+
+\cpright  Copyright (c) 2003-2019, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+          or see $GENIE/LICENSE
+*/
+//____________________________________________________________________________
+
+#ifndef _CBF_SPECTRAL_FUNC_CROSS_SECTION_H_
+#define _CBF_SPECTRAL_FUNC_CROSS_SECTION_H_
+
+#include <string>
+#include <complex>
+
+#include "Math/IFunction.h"
+
+#include "Framework/EventGen/XSecAlgorithmI.h"
+#include "Physics/QuasiElastic/XSection/LeptonTensor.h"
+#include "Physics/QuasiElastic/XSection/FreeNucleonTensor.h"
+#include "Physics/NuclearState/NuclearModelI.h"
+#include "Physics/NuclearState/PauliBlocker.h"
+
+namespace genie {
+
+class QELFormFactorsModelI;
+class QELFormFactors;
+class XSecIntegratorI;
+
+class CBFSpectFuncQELPXSec : public XSecAlgorithmI {
+
+public:
+
+  CBFSpectFuncQELPXSec();
+  CBFSpectFuncQELPXSec(std::string config);
+  virtual ~CBFSpectFuncQELPXSec();
+
+  // XSecAlgorithmI interface implementation
+  double XSec            (const Interaction* i, KinePhaseSpace_t k) const;
+  double Integral        (const Interaction* i) const;
+  bool ValidProcess      (const Interaction* i) const;
+
+  // Override the Algorithm::Configure methods to load configuration
+  // data to private data members
+  void Configure (const Registry& config);
+  void Configure (std::string param_set);
+
+private:
+  void LoadConfig (void);
+
+  const QELFormFactorsModelI* fCCFormFactorsModel;
+  const QELFormFactorsModelI* fNCFormFactorsModel;
+  const QELFormFactorsModelI* fEMFormFactorsModel;
+  mutable QELFormFactors fFormFactors;
+
+  const NuclearModelI* fNuclModel;
+  const PauliBlocker* fPauliBlocker;
+  const XSecIntegratorI* fXSecIntegrator;
+  double fCos8c2; ///< cos^2(cabibbo angle)
+  double fXSecScale; ///< external xsec scaling factor
+};
+
+} // genie namespace
+
+#endif
diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
new file mode 100644
index 000000000..d9160c4d4
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -0,0 +1,201 @@
+#include "Physics/QuasiElastic/XSection/FreeNucleonTensor.h"
+#include "Physics/QuasiElastic/XSection/LeptonTensor.h"
+#include "Physics/QuasiElastic/XSection/QELFormFactorsModelI.h"
+#include "Framework/ParticleData/PDGCodes.h"
+#include "Framework/ParticleData/PDGLibrary.h"
+
+namespace {
+
+  double curly_Q(const TLorentzVector& probeP4, const TLorentzVector& qTildeP4)
+  {
+    TVector3 qP3 = qTildeP4.Vect();
+    double k_dot_q = probeP4.Vect().Dot( qP3 );
+    double qMag = qP3.Mag();
+    double Q = ( 2. * k_dot_q / qMag ) - qMag;
+    return Q;
+  }
+
+  double curly_P(const TLorentzVector& hitNucleonOnShellP4,
+    const TLorentzVector& qTildeP4, double epsilon_B)
+  {
+    double qMag = qTildeP4.P();
+    double omega = qTildeP4.E() + epsilon_B;
+    double P = ( 2.*hitNucleonOnShellP4.E() + omega ) / (2. * qMag);
+    return P;
+  }
+
+  double C1(const TLorentzVector& probeP4, const TLorentzVector qTildeP4,
+    double epsilon_B, double& Q)
+  {
+    double omegaTilde = qTildeP4.E();
+    double omega = omegaTilde + epsilon_B;
+    Q = curly_Q(probeP4, qTildeP4);
+    double k_dot_q = probeP4.Vect().Dot( qTildeP4.Vect() );
+    double coeff1 = (omega - omegaTilde)
+      * ( (Q*Q - omega*omega)*(omega + omegaTilde)
+      - 4.*(probeP4.P()*qTildeP4.P()*Q - omega*k_dot_q) );
+    return coeff1;
+  }
+
+  double C2(const TLorentzVector& probeP4, const TLorentzVector& qTildeP4,
+    const TLorentzVector& hitNucleonOnShellP4, double epsilon_B,
+    double& coeff1)
+  {
+    double Q = 0.;
+    coeff1 = C1(probeP4, qTildeP4, epsilon_B, Q);
+    double P = curly_P(hitNucleonOnShellP4, qTildeP4, epsilon_B);
+    double omegaTilde = qTildeP4.E();
+    double omega = omegaTilde + epsilon_B;
+    double k_dot_p = probeP4.Vect().Dot( hitNucleonOnShellP4.Vect() );
+    double p_dot_q = hitNucleonOnShellP4.Vect().Dot( qTildeP4.Vect() );
+    double k_dot_q = probeP4.Vect().Dot( qTildeP4.Vect() );
+    double coeff2 = coeff1 * std::pow(P, 2);
+    coeff2 += 4. * (omega - omegaTilde) * P * Q * ( k_dot_p
+      - p_dot_q*k_dot_q / qTildeP4.Vect().Mag2() );
+    return coeff2;
+  }
+
+}
+
+genie::FreeNucleonTensor::FreeNucleonTensor(
+  const genie::Interaction& interaction,
+  const genie::QELFormFactors& ff)
+{
+  fInteractionType = interaction.ProcInfo().InteractionTypeId();
+
+  // Get the (on-shell) mass of the initial hit nucleon
+  double mNi = interaction.InitState().Tgt().HitNucMass();
+
+  if ( fInteractionType == kIntWeakCC ) {
+    // For charged current interactions, the (on-shell) "nucleon mass" used in
+    // the matrix element of the nucleon current is the mean of the neutron and
+    // proton masses
+    genie::PDGLibrary* pdg_lib = genie::PDGLibrary::Instance();
+    double neutron_mass = pdg_lib->Find( genie::kPdgNeutron )->Mass();
+    double proton_mass = pdg_lib->Find( genie::kPdgNeutron )->Mass();
+    fNucleonMass = (neutron_mass + proton_mass) / 2.;
+  }
+  else {
+    // For kIntEM or kIntWeakNC, use the mass of the initial struck
+    // nucleon. Note that Target::HitNucMass() gets its value from the
+    // PDGLibrary, so this will correctly be the on-shell mass.
+    fNucleonMass = mNi;
+  }
+
+  // Compute form factors
+  fF1V = ff.F1V();
+  fF2V = ff.xiF2V();
+  fF3V = ff.F3V();
+   fFA = ff.FA();
+   fFP = ff.Fp();
+  fF3A = ff.F3V();
+
+  double ENi = interaction.InitState().Tgt().HitNucP4().E();
+  TVector3 p3Ni = interaction.InitState().Tgt().HitNucP4().Vect();
+  double ENi_on_shell = std::sqrt( p3Ni.Mag2() + mNi*mNi );
+  // TODO: document. See eq. 3 in Phys. Rev. C 77, 044311 (2008).
+  fEpsilonB = ENi_on_shell - ENi;
+
+  TLorentzVector* temp_probeP4 = interaction.InitState().GetProbeP4( kRfLab );
+  TLorentzVector probeP4 = *temp_probeP4;
+  delete temp_probeP4;
+
+  // Get fqTilde (lab frame). Assume that SetFSLeptonP4() has already been
+  // called to store the outgoing lepton's 4-momentum
+  const TLorentzVector& p4lep = interaction.Kine().FSLeptonP4();
+  fqTilde = probeP4 - p4lep;
+  fqTilde.SetE( fqTilde.E() - fEpsilonB );
+
+}
+
+std::complex<double> genie::FreeNucleonTensor::operator()(
+  genie::TensorIndex_t mu, genie::TensorIndex_t nu) const
+{
+  double q2 = fqTilde.M2();
+  double M2 = std::pow(fNucleonMass, 2);
+  double g_mu_nu = Metric(mu,nu);
+  std::complex<double> imaginary_i(0., 1.);
+
+  double p_mu = fPNiOnShell[mu];
+  double p_nu = fPNiOnShell[nu];
+  double q_mu = fqTilde[mu];
+  double q_nu = fqTilde[nu];
+
+  std::complex<double> result(0., 0.);
+
+  // F1V squared term
+  result += std::pow(fF1V, 2) * (p_mu*q_nu + q_mu*p_nu + 2.*p_mu*p_nu
+    + 0.5*q2*g_mu_nu);
+
+  // F2V squared term
+  result -= std::pow(fF2V, 2) * ( -0.5*q2*g_mu_nu
+    + 0.5*(1. + 0.25*q2/M2)*q_mu*q_nu
+    + (0.25*q2/M2)*(p_mu*q_nu + q_mu*p_nu + 2.*p_mu*p_nu) );
+
+  // FA squared term
+  result += std::pow(fFA, 2) * ( 2*M2*g_mu_nu * (0.25*q2/M2 - 1.)
+    + q_mu*p_nu + p_mu*q_nu + 2*p_mu*p_nu );
+
+  // FP squared term
+  result -= std::pow(fFP, 2) * 0.5*q2*q_mu*q_nu / M2;
+
+  // F3V squared term
+  result += 2. * std::pow(fF3V, 2) * (1. - 0.25*q2/M2) * q_mu
+    * q_nu;
+
+  // F3A squared term
+  result -= std::pow(fF3A, 2) * 0.5*q2/M2 * (2.*p_mu + q_mu)
+    * (2.*p_nu + q_nu);
+
+  // F1V * F2V term
+  result += fF1V * fF2V * (q2 * g_mu_nu - q_mu * q_nu);
+
+  // (F1V + F2V) * FA term
+  result -= 2.*imaginary_i * (fF1V + fF2V) * fFA
+    * this->LeviCivitaProduct(mu, nu, fPNiOnShell, fqTilde);
+
+  // FA * FP term
+  result -= 2. * fFA * fFP * q_mu * q_nu;
+
+  // Remaining terms (involving second-class currents)
+  result += (0.5*fF2V*fF3V/M2 - q2*fF3A*fFP/M2 - 2.*fF3A*fFA
+    + 2.*fF1V*fF3V) * (p_mu*q_nu + q_mu*p_nu + q_mu*q_nu);
+
+  // Overall factor
+  result *= 4.;
+
+  return result;
+}
+
+std::complex<double> genie::FreeNucleonTensor::Contract(
+  const Rank2LorentzTensorI& other) const
+{
+  std::complex<double> result = genie::Rank2LorentzTensorI::Contract( other );
+
+  // If we're dealing with the contraction of the EM nucleon current with the
+  // leptonic current, then we need to add a couple of terms to correct for
+  // current conservation
+  // TODO: describe the trick you're using
+  const genie::LeptonTensor* lep = dynamic_cast<const genie::LeptonTensor*>(
+    &other );
+  if ( lep && fInteractionType == kIntEM ) {
+
+    const TLorentzVector& probeP4 = lep->GetProbeP4();
+
+    double qTilde2 = fqTilde.M2();
+    double tau = -qTilde2 / ( 4. * std::pow(fNucleonMass, 2) );
+
+    double coeff1 = 0.;
+    double coeff2 = C2(probeP4, fqTilde, fPNiOnShell, fEpsilonB, coeff1);
+
+    double H1t = tau * std::pow(fF1V + fF2V, 2);
+    double H2t = std::pow(fF1V, 2) + ( tau * std::pow(fF2V, 2) );
+
+    double correction = (std::pow(fNucleonMass, 2) / qTilde2) * coeff1 * H1t;
+    correction += coeff2 * H2t;
+
+    result += correction;
+  }
+
+  return result;
+}
diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h
new file mode 100644
index 000000000..1a8ad3d19
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h
@@ -0,0 +1,79 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::FreeNucleonTensor
+
+\brief    Computes the elements of the free nucleon tensor \f$A^{\mu\nu}\f$
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
+\created  January 17, 2019
+
+\cpright  Copyright (c) 2003-2019, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+          or see $GENIE/LICENSE
+*/
+//____________________________________________________________________________
+
+#ifndef FREE_NUCLEON_TENSOR_H
+#define FREE_NUCLEON_TENSOR_H
+
+// GENIE includes
+#include "Framework/Interaction/Interaction.h"
+#include "Physics/QuasiElastic/XSection/QELFormFactors.h"
+#include "Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h"
+
+namespace genie {
+
+class FreeNucleonTensor : public Rank2LorentzTensorI {
+
+public:
+
+  FreeNucleonTensor(const genie::Interaction& interaction,
+    const genie::QELFormFactors& ff);
+
+  inline virtual ~FreeNucleonTensor() {}
+
+  // Override the Contract() method of Rank2LorentzTensorI to add in a
+  // correction for conservation of the EM current (see Phys. Rev. C 77, 044311
+  // (2008) eqs. (4)-(5) and accompanying text for an explanation)
+  virtual std::complex<double> Contract(const Rank2LorentzTensorI& other) const
+    /*override*/;
+
+  /// Retrieves a tensor element corresponding to the given indices
+  virtual std::complex<double> operator()(TensorIndex_t mu, TensorIndex_t nu)
+    const /*override*/;
+
+protected:
+
+  TLorentzVector fPNiOnShell; ///< Initial nucleon 4-momentum (forced on-shell)
+
+  /// Momentum transfer 4-vector (corrected for binding energy effects
+  /// according to the de Forest prescription)
+  TLorentzVector fqTilde;
+
+  double fNucleonMass; ///< Nucleon mass to use when computing tensor elements
+
+  /// Momentum-dependent binding energy of the initial hit nucleon
+  double fEpsilonB;
+
+  /// Interaction type (EM, CC, NC) to assume when computing the tensor
+  /// elements
+  InteractionType_t fInteractionType;
+
+  /// \name Form factors
+  // TODO: reference conventions!
+  /// @{
+  double fF1V;
+  double fF2V;
+  double fF3V;
+  double fFA;
+  double fFP;
+  double fF3A;
+  /// @}
+
+}; // class FreeNucleonTensor
+
+} // genie namespace
+#endif
diff --git a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
new file mode 100644
index 000000000..27592e101
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
@@ -0,0 +1,69 @@
+#include "Framework/Conventions/RefFrame.h"
+#include "Framework/ParticleData/PDGUtils.h"
+#include "Framework/Messenger/Messenger.h"
+#include "Physics/QuasiElastic/XSection/FreeNucleonTensor.h"
+#include "Physics/QuasiElastic/XSection/LeptonTensor.h"
+
+genie::LeptonTensor::LeptonTensor(const genie::Interaction& interaction)
+{
+  // Get the initial and final lepton momentum 4-vectors in the lab frame
+  TLorentzVector* temp_probeP4 = interaction.InitState()
+    .GetProbeP4( genie::kRfLab );
+  fProbeP4 = *temp_probeP4;
+  delete temp_probeP4;
+  fFSLepP4 = interaction.Kine().FSLeptonP4();
+  fInitialLeptonPDG = interaction.InitState().ProbePdg();
+  fInteractionType = interaction.ProcInfo().InteractionTypeId();
+  fMLep2 = std::pow(interaction.InitState().Probe()->Mass(), 2);
+}
+
+std::complex<double> genie::LeptonTensor::operator()(genie::TensorIndex_t mu,
+  genie::TensorIndex_t nu) const
+{
+  double g_mu_nu = Metric(mu, nu);
+  double common_terms = fProbeP4[mu]*fFSLepP4[nu] + fProbeP4[nu]*fFSLepP4[mu]
+    - g_mu_nu*(fProbeP4 * fFSLepP4);
+
+  std::complex<double> result = 0.;
+  if ( fInteractionType == genie::kIntEM ) {
+    result = 4. * (fMLep2*g_mu_nu + common_terms);
+  }
+  else if ( fInteractionType == genie::kIntWeakCC
+    || fInteractionType == genie::kIntWeakNC )
+  {
+    double sign = 1.;
+    if ( genie::pdg::IsAntiNeutrino(fInitialLeptonPDG) ) sign = -1.;
+    else if ( ! genie::pdg::IsNeutrino(fInitialLeptonPDG) ) {
+      LOG("LeptonTensor", pFATAL) << "Invalid probe PDG code "
+        << fInitialLeptonPDG << " encountered for a weak interaction";
+      std::exit(1);
+    }
+    result = 8. * ( common_terms + sign*LeviCivitaProduct(mu, nu) );
+  }
+  else {
+    LOG("LeptonTensor", pFATAL) << "Invalid interaction type "
+      << fInteractionType << " encountered by genie::LeptonTensor";
+    std::exit(1);
+  }
+
+  return result;
+}
+
+std::complex<double> genie::LeptonTensor::LeviCivitaProduct(
+  genie::TensorIndex_t mu, genie::TensorIndex_t nu) const
+{
+  return Rank2LorentzTensorI::LeviCivitaProduct(mu, nu, fFSLepP4, fProbeP4);
+}
+
+std::complex<double> genie::LeptonTensor::Contract(
+  const Rank2LorentzTensorI& other) const
+{
+  // If we're dealing with the contraction of the EM nucleon current with the
+  // leptonic current, then we need to add a couple of terms to correct for
+  // current conservation. Code to do that lives in
+  // FreeNucleonTensor::Contract(), so call that method if needed.
+  const genie::FreeNucleonTensor* fnt = dynamic_cast<const
+    genie::FreeNucleonTensor*>( &other );
+  if ( fnt && fInteractionType == kIntEM ) return fnt->Contract( *this );
+  else return Rank2LorentzTensorI::Contract( other );
+}
diff --git a/src/Physics/QuasiElastic/XSection/LeptonTensor.h b/src/Physics/QuasiElastic/XSection/LeptonTensor.h
new file mode 100644
index 000000000..3fcebf77f
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/LeptonTensor.h
@@ -0,0 +1,65 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::LeptonTensor
+
+\brief    Computes the elements of the lepton tensor \f$L_{\mu\nu}\f$
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
+\created  January 17, 2019
+
+\cpright  Copyright (c) 2003-2019, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+          or see $GENIE/LICENSE
+*/
+//____________________________________________________________________________
+
+#ifndef LEPTON_TENSOR_H
+#define LEPTON_TENSOR_H
+
+// GENIE includes
+#include "Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h"
+#include "Framework/Interaction/Interaction.h"
+#include "Framework/Interaction/InteractionType.h"
+
+namespace genie {
+
+class LeptonTensor : public Rank2LorentzTensorI {
+
+public:
+
+  LeptonTensor(const genie::Interaction& interaction);
+
+  inline virtual ~LeptonTensor() {}
+
+  inline const TLorentzVector& GetProbeP4() const { return fProbeP4; }
+  inline const TLorentzVector& GetFSLeptonP4() const { return fFSLepP4; }
+
+  // Override the Contract() method of Rank2LorentzTensorI to add in a
+  // correction for conservation of the EM current (see Phys. Rev. C 77, 044311
+  // (2008) eqs. (4)-(5) and accompanying text for an explanation) when this
+  // tensor is contracted with the FreeNucleonTensor.
+  virtual std::complex<double> Contract(const Rank2LorentzTensorI& other) const
+    /*override*/;
+
+  virtual std::complex<double> operator()(genie::TensorIndex_t mu,
+    genie::TensorIndex_t nu) const /*override*/;
+
+protected:
+
+  std::complex<double> LeviCivitaProduct(genie::TensorIndex_t mu,
+    genie::TensorIndex_t nu) const;
+
+  TLorentzVector fProbeP4; ///< Initial lepton 4-momentum
+  TLorentzVector fFSLepP4; ///< Final lepton 4-momentum
+  int fInitialLeptonPDG; ///< PDG code for the initial lepton
+  /// Kind of interaction represented by this tensor (EM, CC, NC, etc.)
+  genie::InteractionType_t fInteractionType;
+  double fMLep2; ///< Square of the initial lepton mass
+
+}; // class LeptonTensor
+
+} // genie namespace
+#endif
diff --git a/src/Physics/QuasiElastic/XSection/LinkDef.h b/src/Physics/QuasiElastic/XSection/LinkDef.h
index 52e37977b..667ed158b 100644
--- a/src/Physics/QuasiElastic/XSection/LinkDef.h
+++ b/src/Physics/QuasiElastic/XSection/LinkDef.h
@@ -21,6 +21,7 @@
 #pragma link C++ class genie::LwlynSmithQELCCPXSec;
 #pragma link C++ class genie::LwlynSmithFFCC;
 #pragma link C++ class genie::LwlynSmithFFNC;
+#pragma link C++ class genie::LwlynSmithFFEM;
 #pragma link C++ class genie::LwlynSmithFF;
 #pragma link C++ class genie::LwlynSmithFFDeltaS;
 #pragma link C++ class genie::AxialFormFactorModelI;
@@ -39,4 +40,9 @@
 #pragma link C++ class genie::QELXSec;
 #pragma link C++ class genie::NewQELXSec;
 
+#pragma link C++ class genie::Rank2LorentzTensorI;
+#pragma link C++ class genie::LeptonTensor;
+#pragma link C++ class genie::FreeNucleonTensor;
+#pragma link C++ class genie::CBFSpectFuncQELPXSec;
+
 #endif
diff --git a/src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.cxx b/src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.cxx
new file mode 100644
index 000000000..299fe40ad
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.cxx
@@ -0,0 +1,54 @@
+//____________________________________________________________________________
+/*
+ Copyright (c) 2003-2019, The GENIE Collaboration
+ For the full text of the license visit http://copyright.genie-mc.org
+ or see $GENIE/LICENSE
+
+ Author: Steven Gardiner <gardiner \at fnal.gov>
+         Fermi National Accelerator Laboratory
+
+ For the class documentation see the corresponding header file.
+
+ Important revisions after version 2.0.0 :
+*/
+//____________________________________________________________________________
+
+#include "Framework/Conventions/Constants.h"
+#include "Framework/Messenger/Messenger.h"
+#include "Framework/ParticleData/PDGUtils.h"
+#include "Physics/QuasiElastic/XSection/LwlynSmithFFEM.h"
+
+using namespace genie;
+using namespace genie::constants;
+
+//____________________________________________________________________________
+LwlynSmithFFEM::LwlynSmithFFEM() :
+LwlynSmithFF("genie::LwlynSmithFFEM")
+{
+
+}
+//____________________________________________________________________________
+LwlynSmithFFEM::LwlynSmithFFEM(string config) :
+LwlynSmithFF("genie::LwlynSmithFFEM", config)
+{
+
+}
+//____________________________________________________________________________
+LwlynSmithFFEM::~LwlynSmithFFEM()
+{
+
+}
+//____________________________________________________________________________
+double LwlynSmithFFEM::F1V(const Interaction* interaction) const
+{
+  int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
+  if ( pdg::IsProton(hit_nuc_pdg) ) return LwlynSmithFF::F1P(interaction);
+  else return LwlynSmithFF::F1N(interaction);
+}
+//____________________________________________________________________________
+double LwlynSmithFFEM::xiF2V(const Interaction* interaction) const
+{
+  int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
+  if ( pdg::IsProton(hit_nuc_pdg) ) return LwlynSmithFF::F2P(interaction);
+  else return LwlynSmithFF::F2N(interaction);
+}
diff --git a/src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.h b/src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.h
new file mode 100644
index 000000000..4e89f6e95
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/LwlynSmithFFEM.h
@@ -0,0 +1,51 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::LwlynSmithFFEM
+
+\brief    Is a concrete implementation of the QELFormFactorsModelI:
+          Form Factors for Quasi Elastic EM eN scattering according to
+          Llewellyn-Smith model.
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
+\created  March 25, 2019
+
+\cpright  Copyright (c) 2003-2019, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+          or see $GENIE/LICENSE
+*/
+//____________________________________________________________________________
+
+#ifndef _LLEWELLYN_SMITH_EM_FORM_FACTOR_MODEL_H_
+#define _LLEWELLYN_SMITH_EM_FORM_FACTOR_MODEL_H_
+
+#include "Physics/QuasiElastic/XSection/LwlynSmithFF.h"
+
+namespace genie {
+
+class LwlynSmithFFEM : public LwlynSmithFF {
+
+public:
+  LwlynSmithFFEM();
+  LwlynSmithFFEM(string config);
+  virtual ~LwlynSmithFFEM();
+
+  // QELFormFactorModelI interface implementation
+  virtual double F1V    (const Interaction * interaction) const /*override*/;
+  virtual double xiF2V  (const Interaction * interaction) const /*override*/;
+  //virtual double F3V  (const Interaction * interaction) const /*override*/;
+
+  inline double FA(const Interaction* /*interaction*/) const /*override*/
+    { return 0.; }
+  inline double Fp(const Interaction* /*interaction*/) const /*override*/
+    { return 0.; }
+  //inline double F3A(const Interaction * interaction) const /*override*/
+  //{ return 0.; }
+};
+
+}      // genie namespace
+
+#endif
+
diff --git a/src/Physics/QuasiElastic/XSection/QELFormFactors.cxx b/src/Physics/QuasiElastic/XSection/QELFormFactors.cxx
index df27581ca..ed886fdb0 100644
--- a/src/Physics/QuasiElastic/XSection/QELFormFactors.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELFormFactors.cxx
@@ -5,7 +5,7 @@
  or see $GENIE/LICENSE
 
  Author: Costas Andreopoulos <costas.andreopoulos \at stfc.ac.uk>
-         University of Liverpool & STFC Rutherford Appleton Lab 
+         University of Liverpool & STFC Rutherford Appleton Lab
 
  For the class documentation see the corresponding header file.
 
diff --git a/src/Physics/QuasiElastic/XSection/QELFormFactors.h b/src/Physics/QuasiElastic/XSection/QELFormFactors.h
index 2d7741eee..472eadd7d 100644
--- a/src/Physics/QuasiElastic/XSection/QELFormFactors.h
+++ b/src/Physics/QuasiElastic/XSection/QELFormFactors.h
@@ -62,6 +62,12 @@ class QELFormFactors {
   //! Get the computed form factor Fp
   double Fp     (void) const { return fFp;    }
 
+  //! Get the computed form factor F3V
+  double F3V    (void) const { return fF3V;   }
+
+  //! Get the computed form factor F3A
+  double F3A    (void) const { return fF3A;   }
+
   //! Get the attached model
   const QELFormFactorsModelI * Model (void) const {return fModel;}
 
@@ -80,6 +86,8 @@ class QELFormFactors {
   double fxiF2V;
   double fFA;
   double fFp;
+  double fF3V;
+  double fF3A;
 
   const QELFormFactorsModelI * fModel;
 };
diff --git a/src/Physics/QuasiElastic/XSection/QELFormFactorsModelI.h b/src/Physics/QuasiElastic/XSection/QELFormFactorsModelI.h
index a042cb724..663cec75c 100644
--- a/src/Physics/QuasiElastic/XSection/QELFormFactorsModelI.h
+++ b/src/Physics/QuasiElastic/XSection/QELFormFactorsModelI.h
@@ -43,11 +43,22 @@ class QELFormFactorsModelI : public Algorithm {
   //! Compute the form factor Fp for the input interaction
   virtual double Fp    (const Interaction * interaction) const = 0;
 
+  //! \name Second-class currents
+  //! @{
+  //! Compute the form factor F3V for the input interaction
+  inline virtual double F3V(const Interaction* /*interaction*/)
+    const { return 0.; }
+
+  //! Compute the form factor F3A for the input interaction
+  inline virtual double F3A(const Interaction* /*interaction*/)
+    const { return 0.; }
+  //! @}
+
 protected:
   QELFormFactorsModelI();
   QELFormFactorsModelI(string name);
   QELFormFactorsModelI(string name, string config);
 };
 
-}         // genie namespace 
+}         // genie namespace
 #endif    // _QEL_FORM_FACTORS_MODEL_I_H_
diff --git a/src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.cxx b/src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.cxx
new file mode 100644
index 000000000..a8481aad3
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.cxx
@@ -0,0 +1,64 @@
+#include "Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h"
+
+std::complex<double> genie::Rank2LorentzTensorI::Contract(
+  const genie::Rank2LorentzTensorI& other) const
+{
+  std::complex<double> sum(0., 0.);
+  for (int m = 0; m < 4; ++m) {
+    for (int n = 0; n < 4; ++n) {
+      genie::TensorIndex_t mu = static_cast<genie::TensorIndex_t>( m );
+      genie::TensorIndex_t nu = static_cast<genie::TensorIndex_t>( n );
+      sum += this->operator()(mu, nu) * other(mu, nu) * this->Metric(mu, mu)
+        * this->Metric(nu, nu);
+    }
+  }
+  return sum;
+}
+
+double genie::Rank2LorentzTensorI::LeviCivitaProduct(genie::TensorIndex_t mu,
+  genie::TensorIndex_t nu, const TLorentzVector& p1, const TLorentzVector& p2)
+  const
+{
+  if (mu == nu) return 0.;
+
+  // This should really be a constexpr std::array once GENIE upgrades to C++11
+  // TODO: is there a cleaner way to do this?
+  static const genie::TensorIndex_t indices[]
+    = { kTIdx_SpaceX, kTIdx_SpaceY, kTIdx_SpaceZ, kTIdx_Time };
+
+  bool set_alpha = false;
+  bool set_beta = false;
+  genie::TensorIndex_t alpha, beta;
+  for (int k = 0; k < 4; ++k) {
+    genie::TensorIndex_t index = indices[k];
+    if (mu != index && nu != index) {
+      if ( !set_alpha ) {
+        alpha = index;
+        set_alpha = true;
+      }
+      else {
+        beta = index;
+        set_beta = true;
+      }
+    }
+  }
+
+  if ( !(set_alpha && set_beta) ) {
+    // TODO: ERROR!
+  }
+
+  // See http://www.cpluscode.org/p/physics-c.html
+  // TODO: check that this actually works and that epsilon(0,1,2,3) has the
+  // right sign!
+  int i = mu + 1;
+  int j = nu + 1;
+  int k = alpha + 1;
+  int l = beta + 1;
+
+  int levi_civita_sign = (i - j) * (i - k) * (i - l) * (j - k) * (j - l)
+    * (k - l) / 12;
+
+  double result = levi_civita_sign * (p1[alpha]*p2[beta] - p1[beta]*p2[alpha]);
+
+  return result;
+}
diff --git a/src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h b/src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h
new file mode 100644
index 000000000..6b70c6011
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h
@@ -0,0 +1,126 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::Rank2LorentzTensor
+
+\brief    Abstract interface for an object that computes the elements of a rank
+          2 Lorentz tensor \f$A^{\mu\nu}\f$.
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
+\created  January 17, 2019
+
+\cpright  Copyright (c) 2003-2018, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+          or see $GENIE/LICENSE
+*/
+//____________________________________________________________________________
+
+#ifndef RANK_2_LORENTZ_TENSORI_H
+#define RANK_2_LORENTZ_TENSORI_H
+
+#include <complex>
+
+#include "TLorentzVector.h"
+
+namespace genie {
+
+// Order is chosen to match TLorentzVector convention
+typedef enum ELorentzTensorIndices {
+  kTIdx_SpaceX = 0,
+  kTIdx_SpaceY = 1,
+  kTIdx_SpaceZ = 2,
+  kTIdx_Time = 3,
+  kTIdx_NumDimensions = 4
+} TensorIndex_t;
+
+class Rank2LorentzTensorI {
+
+public:
+
+  inline virtual ~Rank2LorentzTensorI() {}
+
+  /// \name Tensor elements
+  /// \brief Functions that return the elements of the tensor.
+  /// @{
+
+  /// Retrieves a tensor element corresponding to the given indices
+  virtual std::complex<double> operator()(TensorIndex_t mu, TensorIndex_t nu)
+    const = 0;
+
+  ///// The tensor element \f$A^{00}\f$
+  //virtual std::complex<double> tt() const = 0;
+
+  ///// The tensor element \f$A^{0x}\f$
+  //virtual std::complex<double> tx() const = 0;
+
+  ///// The tensor element \f$A^{0y}\f$
+  //virtual std::complex<double> ty() const = 0;
+
+  ///// The tensor element \f$A^{0z}\f$
+  //virtual std::complex<double> tz() const = 0;
+
+  ///// The tensor element \f$A^{x0} = (A^{0x})^*\f$
+  //virtual std::complex<double> xt() const = 0;
+
+  ///// The tensor element \f$A^{xx}\f$
+  //virtual std::complex<double> xx() const = 0;
+
+  ///// The tensor element \f$A^{xy}\f$
+  //virtual std::complex<double> xy() const = 0;
+
+  ///// The tensor element \f$A^{xz}\f$
+  //virtual std::complex<double> xz() const = 0;
+
+  ///// The tensor element \f$A^{y0} = (A^{0y})^*\f$
+  //virtual std::complex<double> yt() const = 0;
+
+  ///// The tensor element \f$A^{yx} = (A^{xy})^*\f$
+  //virtual std::complex<double> yx() const = 0;
+
+  ///// The tensor element \f$A^{yy}\f$
+  //virtual std::complex<double> yy() const = 0;
+
+  ///// The tensor element \f$A^{yz}\f$
+  //virtual std::complex<double> yz() const = 0;
+
+  ///// The tensor element \f$A^{z0} = (A^{0z})^*\f$
+  //virtual std::complex<double> zt() const = 0;
+
+  ///// The tensor element \f$A^{zx} = (A^{xz})^*\f$
+  //virtual std::complex<double> zx() const = 0;
+
+  ///// The tensor element \f$A^{zy} = (A^{yz})^*\f$
+  //virtual std::complex<double> zy() const = 0;
+
+  ///// The tensor element \f$A^{zz}\f$
+  //virtual std::complex<double> zz() const = 0;
+
+  /// @}
+
+  /// \name Operations
+  /// @{
+  virtual std::complex<double> Contract(const Rank2LorentzTensorI& other) const;
+  inline std::complex<double> operator*(const Rank2LorentzTensorI& other) const
+  {
+    return this->Contract( other );
+  }
+  /// @}
+
+  // Returns the corresponding element of the metric tensor
+  double Metric(TensorIndex_t mu, TensorIndex_t nu) const {
+    // TODO: deal with invalid enum values
+    if (mu != nu) return 0.;
+    else if (mu == kTIdx_Time) return 1.;
+    else return -1.;
+  }
+
+  // TODO: document this
+  double LeviCivitaProduct(genie::TensorIndex_t mu, genie::TensorIndex_t nu,
+    const TLorentzVector& p1, const TLorentzVector& p2) const;
+
+}; // class Rank2LorentzTensorI
+
+} // genie namespace
+#endif

From 13186d31f832501bd322efb30fce98abc6cc41dd Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Mon, 29 Apr 2019 18:36:48 -0500
Subject: [PATCH 02/36] Refactor the SpectralFunc class to use histograms
 instead of graphs (tightly-peaked distribution leads to very slow rejection
 sampling) and to look up the data files using its XML configuration. The
 histograms used to represent the spectral functions are now initialized
 lazily.

---
 config/SpectralFunc.xml                   |  10 +-
 src/Physics/NuclearState/SpectralFunc.cxx | 330 ++++++++++++++--------
 src/Physics/NuclearState/SpectralFunc.h   |  30 +-
 3 files changed, 245 insertions(+), 125 deletions(-)

diff --git a/config/SpectralFunc.xml b/config/SpectralFunc.xml
index 71330fdf3..bb2637964 100644
--- a/config/SpectralFunc.xml
+++ b/config/SpectralFunc.xml
@@ -12,7 +12,15 @@ Name               Type    Optional   Comment                      Default
 -->
 
   <param_set name="Default"> 
+
+    <!-- The data file path may be specified relative to the GENIE root folder or
+       as an absolute path -->
+    <param type="string" name="DataPathType"> relative </param>
+    <param type="string" name="DataPath"> data/evgen/nucl/spectral_functions </param>
+
+    <param type="string" name="SpectFuncTable@Pdg=1000060120"> benhar-sf-12c.data </param>
+    <param type="string" name="SpectFuncTable@Pdg=1000260560"> benhar-sf-56fe.data </param>
+
   </param_set>
 
 </alg_conf>
-
diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index 6f8602b0a..affe628cc 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -7,17 +7,28 @@
  Author: Costas Andreopoulos <costas.andreopoulos \at stfc.ac.uk>
          University of Liverpool & STFC Rutherford Appleton Lab
 
+         Steven Gardiner <gardiner \at fnal.gov>
+         Fermi National Accelerator Laboratory
+
  For the class documentation see the corresponding header file.
 
  Important revisions after version 2.0.0 :
  @ May 01, 2012 - CA
    Pick spectral function data from $GENIE/data/evgen/nucl/spectral_functions
+
+ @ April 29, 2019 - SG
+   Full rewrite to use finely-binned histograms (tightly-peaked distributions led
+   to very slow rejection sampling), XML-based configuration of spectral function
+   data files with lazy initialization
 */
 //____________________________________________________________________________
 
-#include "TSystem.h"
-#include "TNtupleD.h"
+#include "TF2.h"
 #include "TGraph2D.h"
+#include "TH2D.h"
+#include "TNtupleD.h"
+#include "TRandom.h"
+#include "TSystem.h"
 
 #include "Framework/Conventions/Constants.h"
 #include "Framework/Conventions/Controls.h"
@@ -27,183 +38,266 @@
 #include "Framework/ParticleData/PDGCodes.h"
 #include "Framework/Numerical/RandomGen.h"
 
+// Create a functor class in this anonymous namespace for now. We will use it
+// to facilitate numerical integration of TGraph2D objects in genie::SpectralFunc.
+// TODO: when GENIE moves to C++11, replace this nonsense with a lambda expression.
+namespace {
+
+  // Store a pointer to the TGraph2D to be integrated, but don't take ownership
+  class FunctorThatShouldBeALambda {
+    public:
+      FunctorThatShouldBeALambda(TGraph2D* graph) : fGraph( graph ) {}
+
+      double operator()(double* x, double*) {
+        return fGraph->Interpolate( x[0], x[1] );
+      }
+
+    private:
+      TGraph2D* fGraph;
+  };
+
+}
+
 using namespace genie;
 using namespace genie::constants;
 using namespace genie::controls;
 
 //____________________________________________________________________________
-SpectralFunc::SpectralFunc() :
-NuclearModelI("genie::SpectralFunc")
+SpectralFunc::SpectralFunc() : NuclearModelI("genie::SpectralFunc")
 {
-  fSfFe56 = 0;
-  fSfC12  = 0;
+
 }
 //____________________________________________________________________________
 SpectralFunc::SpectralFunc(string config) :
-NuclearModelI("genie::SpectralFunc", config)
+  NuclearModelI("genie::SpectralFunc", config)
 {
-  fSfFe56 = 0;
-  fSfC12  = 0;
+
 }
 //____________________________________________________________________________
 SpectralFunc::~SpectralFunc()
 {
-//if (fSfFe56) delete fSfFe56;
-//if (fSfC12 ) delete fSfC12;
+  // Delete the TH2D objects from the spectral function map
+  std::map<int, TH2D*>::iterator begin = fSpectralFunctionMap.begin();
+  std::map<int, TH2D*>::iterator end = fSpectralFunctionMap.end();
+  for (std::map<int, TH2D*>::iterator iter = begin; iter != end; ++iter) {
+    TH2D* hist = iter->second;
+    if ( hist ) delete hist;
+  }
 }
 //____________________________________________________________________________
-bool SpectralFunc::GenerateNucleon(const Target & target) const
+bool SpectralFunc::GenerateNucleon(const Target& target) const
 {
-  TGraph2D * sf = this->SelectSpectralFunction(target);
+  TH2D* sf = this->SelectSpectralFunction( target );
 
-  if(!sf) {
+  if ( !sf ) {
     fCurrRemovalEnergy = 0.;
-    fCurrMomentum.SetXYZ(0.,0.,0.);
+    fCurrMomentum.SetXYZ(0., 0., 0.);
     return false;
   }
 
-  double kmin    = sf->GetXmin(); // momentum range
-  double kmax    = sf->GetXmax();
-  double wmin    = sf->GetYmin(); // removal energy range
-  double wmax    = sf->GetYmax();
-  double probmax = sf->GetZmax(); // maximum probability
-  probmax *= 1.1;
-
-  double dk = kmax - kmin;
-  double dw = wmax - wmin;
+  double kmin    = sf->GetXaxis()->GetBinLowEdge( 1 ); // momentum range
+  double kmax    = sf->GetXaxis()->GetBinLowEdge( fNumXBins + 1 );
+  double wmin    = sf->GetYaxis()->GetBinLowEdge( 1 ); // removal energy range
+  double wmax    = sf->GetYaxis()->GetBinLowEdge( fNumYBins + 1 );
 
   LOG("SpectralFunc", pINFO) << "Momentum range = ["   << kmin << ", " << kmax << "]";
   LOG("SpectralFunc", pINFO) << "Rmv energy range = [" << wmin << ", " << wmax << "]";
 
-  RandomGen * rnd = RandomGen::Instance();
+  // Temporarily replace ROOT's gRandom RNG with GENIE's so that our call to
+  // TH2::GetRandom2() will use GENIE's random numbers
+  TRandom* old_gRandom = gRandom;
+  RandomGen* rnd = RandomGen::Instance();
+  gRandom = &rnd->RndGen();
 
-  unsigned int niter = 0;
-  while(1) {
-    if (niter > 10000*kRjMaxIterations) {
-       LOG("SpectralFunc", pWARN)
-           << "Couldn't generate a hit nucleon after " << niter << " iterations";
-       return false;
-    }
-    niter++;
-
-    // random pair
-    double kc = kmin + dk * rnd->RndGen().Rndm();
-    double wc = wmin + dw * rnd->RndGen().Rndm();
-    LOG("SpectralFunc", pINFO) << "Trying p = " << kc << ", w = " << wc;
-
-    // accept/reject
-    double prob  = this->Prob(kc,wc, target);
-    double probg = probmax * rnd->RndGen().Rndm();
-    bool accept = (probg < prob);
-    if ( !accept ) continue;
-
-    LOG("SpectralFunc", pINFO) << "|p,nucleon| = " << kc;
-    LOG("SpectralFunc", pINFO) << "|w,nucleon| = " << wc;
-
-    // generate momentum components
-    double costheta = -1. + 2. * rnd->RndGen().Rndm();
-    double sintheta = TMath::Sqrt(1.-costheta*costheta);
-    double fi       = 2 * kPi * rnd->RndGen().Rndm();
-    double cosfi    = TMath::Cos(fi);
-    double sinfi    = TMath::Sin(fi);
-
-    double kx = kc*sintheta*cosfi;
-    double ky = kc*sintheta*sinfi;
-    double kz = kc*costheta;
-
-    // set generated values
-    fCurrRemovalEnergy = wc;
-    fCurrMomentum.SetXYZ(kx,ky,kz);
-
-    return true;
-  }
-  return false;
+  // Pick a random nucleon momentum and removal energy using the spectral
+  // function histogram
+  double kc = 0.;
+  double wc = 0.;
+  sf->GetRandom2( kc, wc );
+
+  // Restore ROOT's old gRandom now that we've had our fun
+  gRandom = old_gRandom;
+
+  // Log our choices for the nucleon momentum and removal energy
+  LOG("SpectralFunc", pINFO) << "|p,nucleon| = " << kc;
+  LOG("SpectralFunc", pINFO) << "|w,nucleon| = " << wc;
+
+  // Generate momentum components
+  double costheta = -1. + 2. * rnd->RndGen().Rndm();
+  double sintheta = TMath::Sqrt(1.-costheta*costheta);
+  double fi       = 2 * kPi * rnd->RndGen().Rndm();
+  double cosfi    = TMath::Cos(fi);
+  double sinfi    = TMath::Sin(fi);
+
+  double kx = kc * sintheta * cosfi;
+  double ky = kc * sintheta * sinfi;
+  double kz = kc * costheta;
+
+  // set generated values
+  fCurrRemovalEnergy = wc;
+  fCurrMomentum.SetXYZ(kx,ky,kz);
+
+  return true;
 }
 //____________________________________________________________________________
-double SpectralFunc::Prob(
-                         double p, double w, const Target & target) const
+double SpectralFunc::Prob(double p, double w, const Target & target) const
 {
-  TGraph2D * sf = this->SelectSpectralFunction(target);
-  if(!sf) return 0;
+  TH2D* sf = this->SelectSpectralFunction( target );
+  if ( !sf ) return 0.;
+
+  // TODO: check whether we should return the probability mass or density here.
+  // The previous implementation used the density. For now, we do that too.
+  int bin_num = sf->FindBin( p, w );
+  double prob_mass = sf->GetBinContent( bin_num );
 
-  return sf->Interpolate(p,w);
+  int bx, by, bz;
+  sf->GetBinXYZ( bin_num, bx, by, bz );
+
+  double prob_density = prob_mass / sf->GetXaxis()->GetBinWidth( bx )
+    / sf->GetYaxis()->GetBinWidth( by );
+
+  return prob_density;
 }
 //____________________________________________________________________________
 void SpectralFunc::Configure(const Registry & config)
 {
-  Algorithm::Configure(config);
+  Algorithm::Configure( config );
   this->LoadConfig();
 }
 //____________________________________________________________________________
 void SpectralFunc::Configure(string param_set)
 {
-  Algorithm::Configure(param_set);
+  Algorithm::Configure( param_set );
   this->LoadConfig();
 }
 //____________________________________________________________________________
 void SpectralFunc::LoadConfig(void)
 {
-  LOG("SpectralFunc", pDEBUG) << "Loading Benhar et al. spectral functions";
-
-  string data_dir =
-        string(gSystem->Getenv("GENIE")) +
-        string("/data/evgen/nucl/spectral_functions/");
-  string c12file  = data_dir + "benhar-sf-12c.data";
-  string fe56file = data_dir + "benhar-sf-56fe.data";
+  // Determine the folder that should be searched to find the spectral function
+  // data files
+  std::string data_path_type;
+  this->GetParamDef( "DataPathType", data_path_type, std::string("relative") );
 
-  TNtupleD sfdata_fe56("sfdata_fe56","","k:e:prob");
-  TNtupleD sfdata_c12 ("sfdata_c12", "","k:e:prob");
+  std::string data_path;
+  this->GetParam( "DataPath", data_path );
+  // Ensure that the path ends with '/', just in case
+  data_path += '/';
 
-  sfdata_fe56.ReadFile ( fe56file.c_str() );
-  sfdata_c12. ReadFile ( c12file.c_str () );
-
-  LOG("SpectralFunc", pDEBUG) << "Loaded " << sfdata_fe56.GetEntries() << " Fe56 points";
-  LOG("SpectralFunc", pDEBUG) << "Loaded " << sfdata_c12.GetEntries()  << " C12 points";
+  if ( data_path_type == "relative" ) {
+    std::string genie_path = gSystem->Getenv("GENIE");
+    genie_path += '/';
+    data_path = genie_path + data_path;
+  }
 
-  if (fSfFe56) delete fSfFe56;
-  if (fSfC12 ) delete fSfC12;
+  fDataPath = data_path;
 
-  fSfFe56 = this->Convert2Graph(sfdata_fe56);
-  fSfC12  = this->Convert2Graph(sfdata_c12);
+  // Get the number of bins to use for each axis of the spectral function
+  // histogram
+  this->GetParamDef( "NumMomentumBins", fNumXBins, 1000 );
+  this->GetParamDef( "NumRemovalEnergyBins", fNumYBins, 1000 );
 
-  fSfFe56->SetName("sf_fe56");
-  fSfC12 ->SetName("sf_c12");
 }
 //____________________________________________________________________________
-TGraph2D * SpectralFunc::Convert2Graph(TNtupleD & sfdata) const
+TGraph2D* SpectralFunc::Convert2Graph(TNtupleD& sfdata) const
 {
   int np = sfdata.GetEntries();
-  TGraph2D * sfgraph = new TGraph2D(np);
+  TGraph2D * sfgraph = new TGraph2D( np );
 
   sfdata.Draw("k:e:prob","","GOFF");
-  assert(np==sfdata.GetSelectedRows());
-  double * k = sfdata.GetV1();
-  double * e = sfdata.GetV2();
-  double * p = sfdata.GetV3();
-
-  for(int i=0; i<np; i++) {
-    double ki = k[i] * (units::MeV/units::GeV); // momentum
-    double ei = e[i] * (units::MeV/units::GeV); // removal energy
-    double pi = p[i] * TMath::Power(ki,2);      // probabillity
-    sfgraph->SetPoint(i, ki,ei,pi);
+  assert( np == sfdata.GetSelectedRows() );
+  double* k = sfdata.GetV1();
+  double* e = sfdata.GetV2();
+  double* p = sfdata.GetV3();
+
+  for (int i = 0; i < np; ++i ) {
+    double ki = k[i] * ( units::MeV / units::GeV ); // momentum
+    double ei = e[i] * ( units::MeV / units::GeV ); // removal energy
+    double pi = p[i] * TMath::Power(ki,2); // probabillity
+    sfgraph->SetPoint(i, ki, ei, pi);
   }
   return sfgraph;
 }
 //____________________________________________________________________________
-TGraph2D * SpectralFunc::SelectSpectralFunction(const Target & t) const
+TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
 {
-  TGraph2D * sf = 0;
-  int pdgc = t.Pdg();
-
-  if      (pdgc == kPdgTgtC12)  sf = fSfC12;
-  else if (pdgc == kPdgTgtFe56) sf = fSfFe56;
-  else {
-    LOG("SpectralFunc", pERROR)
-     << "** The spectral function for target " << pdgc << " isn't available";
+  // First check whether we've already built the requested spectral function
+  int target_pdg = t.Pdg();
+  if ( fSpectralFunctionMap.count(target_pdg) ) {
+    return fSpectralFunctionMap.at( target_pdg );
   }
-  if(!sf) {
-    LOG("SpectralFunc", pERROR) << "** Null spectral function";
+
+  // If not, attempt to build it
+  std::string target_pdg_string = std::to_string( target_pdg );
+  RgKey sf_key( "SpectFuncTable@Pdg=" + target_pdg_string );
+  std::string data_filename;
+  this->GetParamDef( sf_key, data_filename, std::string() );
+
+  if ( data_filename.empty() ) {
+    LOG("SpectralFunc", pERROR) << "** The spectral function for target "
+      << target_pdg << " isn't available";
+    std::exit( 1 );
   }
-  return sf;
+
+  // Prepend the data path to the file name
+  data_filename = fDataPath + data_filename;
+
+  TNtupleD temp_sf_data( ("sfdata_" + target_pdg_string).c_str(), "", "k:e:prob" );
+
+  temp_sf_data.ReadFile( data_filename.c_str() );
+
+  LOG("SpectralFunc", pDEBUG) << "Loaded " << temp_sf_data.GetEntries()
+    << " spectral function data points for pdg code " << target_pdg;
+
+  TGraph2D* temp_sf_graph = this->Convert2Graph( temp_sf_data );
+  temp_sf_graph->SetName( ("sf_" + target_pdg_string).c_str() );
+
+  // Create a TF2 that we can use to easily integrate the TGraph2D over
+  // histogram bins
+  double x_min = temp_sf_graph->GetXmin();
+  double x_max = temp_sf_graph->GetXmax();
+
+  double y_min = temp_sf_graph->GetYmin();
+  double y_max = temp_sf_graph->GetYmax();
+
+  FunctorThatShouldBeALambda functor( temp_sf_graph );
+  TF2 temp_sf_func("temp_sf_func", functor, x_min, x_max, y_min, y_max, 0);
+
+  // Create a 2D histogram to represent the spectral function
+  TH2D* sf_hist = new TH2D( ("sf_hist" + target_pdg_string).c_str(),
+    ("spectral function for pdg code " + target_pdg_string
+    + "; nucleon momentum (GeV); removal energy (GeV); probability").c_str(),
+    fNumXBins, x_min, x_max, fNumYBins, y_min, y_max );
+
+  // Set the directory to NULL so that this histogram is never auto-deleted
+  // (the genie::SpectralFunc object will take ownership)
+  sf_hist->SetDirectory( NULL );
+
+  for ( int bx = 1; bx <= fNumXBins; ++bx ) {
+    for ( int by = 1; by <= fNumYBins; ++by ) {
+
+      // Get the current bin's boundaries
+      double bin_x_min = sf_hist->GetXaxis()->GetBinLowEdge( bx );
+      double bin_x_max = sf_hist->GetXaxis()->GetBinLowEdge( bx + 1 );
+
+      double bin_y_min = sf_hist->GetYaxis()->GetBinLowEdge( by );
+      double bin_y_max = sf_hist->GetYaxis()->GetBinLowEdge( by + 1 );
+
+      // Probability mass for the current bin
+      double pmf = temp_sf_func.Integral( bin_x_min, bin_x_max, bin_y_min,
+        bin_y_max );
+
+      // Get the global bin number for the current bin
+      int bin_num = sf_hist->GetBin( bx, by );
+
+      // Set its contents to match the probability mass function
+      sf_hist->SetBinContent( bin_num, pmf );
+    }
+  }
+
+  delete temp_sf_graph;
+
+  // Store the new spectral function histogram for easy retrieval later
+  fSpectralFunctionMap[ target_pdg ] = sf_hist;
+
+  return sf_hist;
 }
-//____________________________________________________________________________
diff --git a/src/Physics/NuclearState/SpectralFunc.h b/src/Physics/NuclearState/SpectralFunc.h
index 2a700bac4..6c4cc6a6d 100644
--- a/src/Physics/NuclearState/SpectralFunc.h
+++ b/src/Physics/NuclearState/SpectralFunc.h
@@ -9,6 +9,9 @@
 \author   Costas Andreopoulos <costas.andreopoulos \at stfc.ac.uk>
           University of Liverpool & STFC Rutherford Appleton Lab
 
+          Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
 \created  May 07, 2004
 
 \cpright  Copyright (c) 2003-2019, The GENIE Collaboration
@@ -21,10 +24,13 @@
 #ifndef _SPECTRAL_FUNCTION_H_
 #define _SPECTRAL_FUNCTION_H_
 
+#include <map>
+
 #include "Physics/NuclearState/NuclearModelI.h"
 
-class TNtupleD;
 class TGraph2D;
+class TH2D;
+class TNtupleD;
 
 namespace genie {
 
@@ -41,7 +47,7 @@ class SpectralFunc : public NuclearModelI {
   //-- implement the NuclearModelI interface
   bool           GenerateNucleon (const Target & t) const;
   double         Prob            (double p, double w, const Target & t) const;
-  NuclearModel_t ModelType       (const Target &) const 
+  NuclearModel_t ModelType       (const Target &) const
   {
     return kNucmSpectralFunc;
   }
@@ -53,11 +59,23 @@ class SpectralFunc : public NuclearModelI {
 
 private:
   void       LoadConfig             (void);
-  TGraph2D * Convert2Graph          (TNtupleD & data) const;
-  TGraph2D * SelectSpectralFunction (const Target & target) const; 
+  TGraph2D*  Convert2Graph          (TNtupleD& data) const;
+  TH2D*      SelectSpectralFunction (const Target& target) const;
+
+  /// The path to the folder containing the spectral function data files
+  std::string fDataPath;
+
+  /// Map storing cached spectral functions. Keys are nuclear PDG codes,
+  /// values are 2D histograms representing the probability distribution
+  mutable std::map<int, TH2D*> fSpectralFunctionMap;
+
+  /// The number of nucleon momentum bins to use when making spectral function
+  /// histograms
+  int fNumXBins;
 
-  TGraph2D * fSfFe56;   ///< Benhar's Fe56 SF
-  TGraph2D * fSfC12;    ///< Benhar's C12 SF
+  /// The number of removal energy bins to use when making spectral function
+  /// histograms
+  int fNumYBins;
 };
 
 }      // genie namespace

From b653c652db7c731f2a1d83ac8ed001d5a23519d3 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Tue, 30 Apr 2019 09:53:59 -0500
Subject: [PATCH 03/36] Remove reference to std::to_string, which is a C++11
 feature

---
 src/Physics/NuclearState/SpectralFunc.cxx | 15 +++++++++++++--
 1 file changed, 13 insertions(+), 2 deletions(-)

diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index affe628cc..eeae6577d 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -23,6 +23,9 @@
 */
 //____________________________________________________________________________
 
+#include <sstream>
+#include <string>
+
 #include "TF2.h"
 #include "TGraph2D.h"
 #include "TH2D.h"
@@ -56,6 +59,13 @@ namespace {
       TGraph2D* fGraph;
   };
 
+  // Replace this with std::to_string when we switch to C++11
+  std::string replace_with_std_to_string(int an_integer) {
+    std::ostringstream oss;
+    oss << an_integer;
+    return oss.str();
+  }
+
 }
 
 using namespace genie;
@@ -227,7 +237,7 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
   }
 
   // If not, attempt to build it
-  std::string target_pdg_string = std::to_string( target_pdg );
+  std::string target_pdg_string = replace_with_std_to_string( target_pdg );
   RgKey sf_key( "SpectFuncTable@Pdg=" + target_pdg_string );
   std::string data_filename;
   this->GetParamDef( sf_key, data_filename, std::string() );
@@ -241,7 +251,8 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
   // Prepend the data path to the file name
   data_filename = fDataPath + data_filename;
 
-  TNtupleD temp_sf_data( ("sfdata_" + target_pdg_string).c_str(), "", "k:e:prob" );
+  TNtupleD temp_sf_data( ("sfdata_" + target_pdg_string).c_str(), "",
+    "k:e:prob" );
 
   temp_sf_data.ReadFile( data_filename.c_str() );
 

From 0a9e86b12f2072b305e1c9c16296a1e561fa75f3 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <sjgardiner@ucdavis.edu>
Date: Tue, 4 Jun 2019 01:52:14 -0500
Subject: [PATCH 04/36] Add missing initialization of the on-shell initial
 nucleon 4-momentum to the FreeNucleonTensor class

---
 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index d9160c4d4..12fc85333 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -106,6 +106,7 @@ genie::FreeNucleonTensor::FreeNucleonTensor(
   fqTilde = probeP4 - p4lep;
   fqTilde.SetE( fqTilde.E() - fEpsilonB );
 
+  fPNiOnShell = TLorentzVector( p3Ni, ENi_on_shell );
 }
 
 std::complex<double> genie::FreeNucleonTensor::operator()(

From baee2119a139fa20b25ee697a9fb3efd3ec6b17c Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 13 Jun 2019 11:22:07 -0500
Subject: [PATCH 05/36] Add a new version of the 12C spectral function that
 matches the table used by Noemi's fortran code

---
 config/SpectralFunc.xml                       |    3 +-
 .../pke12_tot_genie_format.data               | 3200 +++++++++++++++++
 2 files changed, 3202 insertions(+), 1 deletion(-)
 create mode 100644 data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data

diff --git a/config/SpectralFunc.xml b/config/SpectralFunc.xml
index bb2637964..5648ea16b 100644
--- a/config/SpectralFunc.xml
+++ b/config/SpectralFunc.xml
@@ -18,7 +18,8 @@ Name               Type    Optional   Comment                      Default
     <param type="string" name="DataPathType"> relative </param>
     <param type="string" name="DataPath"> data/evgen/nucl/spectral_functions </param>
 
-    <param type="string" name="SpectFuncTable@Pdg=1000060120"> benhar-sf-12c.data </param>
+    <!-- <param type="string" name="SpectFuncTable@Pdg=1000060120"> benhar-sf-12c.data </param> -->
+    <param type="string" name="SpectFuncTable@Pdg=1000060120"> pke12_tot_genie_format.data </param>
     <param type="string" name="SpectFuncTable@Pdg=1000260560"> benhar-sf-56fe.data </param>
 
   </param_set>
diff --git a/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data b/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data
new file mode 100644
index 000000000..dab69a2a7
--- /dev/null
+++ b/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data
@@ -0,0 +1,3200 @@
+0.10000E+02 2.5 0.000E+00
+0.10000E+02 7.5 0.000E+00
+0.10000E+02 12.5 0.000E+00
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+0.10000E+02 72.5 0.499E-09
+0.10000E+02 77.5 0.395E-09
+0.10000E+02 82.5 0.313E-09
+0.10000E+02 87.5 0.257E-09
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+0.79000E+03 182.5 0.465E-13
+0.79000E+03 187.5 0.510E-13
+0.79000E+03 192.5 0.549E-13
+0.79000E+03 197.5 0.591E-13
+0.79000E+03 202.5 0.636E-13
+0.79000E+03 207.5 0.676E-13
+0.79000E+03 212.5 0.721E-13
+0.79000E+03 217.5 0.767E-13
+0.79000E+03 222.5 0.812E-13
+0.79000E+03 227.5 0.858E-13
+0.79000E+03 232.5 0.898E-13
+0.79000E+03 237.5 0.937E-13
+0.79000E+03 242.5 0.977E-13
+0.79000E+03 247.5 0.102E-12
+0.79000E+03 252.5 0.106E-12
+0.79000E+03 257.5 0.110E-12
+0.79000E+03 262.5 0.114E-12
+0.79000E+03 267.5 0.116E-12
+0.79000E+03 272.5 0.120E-12
+0.79000E+03 277.5 0.123E-12
+0.79000E+03 282.5 0.126E-12
+0.79000E+03 287.5 0.128E-12
+0.79000E+03 292.5 0.130E-12
+0.79000E+03 297.5 0.132E-12
+0.79000E+03 302.5 0.134E-12
+0.79000E+03 307.5 0.136E-12
+0.79000E+03 312.5 0.137E-12
+0.79000E+03 317.5 0.139E-12
+0.79000E+03 322.5 0.139E-12
+0.79000E+03 327.5 0.140E-12
+0.79000E+03 332.5 0.140E-12
+0.79000E+03 337.5 0.140E-12
+0.79000E+03 342.5 0.139E-12
+0.79000E+03 347.5 0.139E-12
+0.79000E+03 352.5 0.138E-12
+0.79000E+03 357.5 0.137E-12
+0.79000E+03 362.5 0.135E-12
+0.79000E+03 367.5 0.132E-12
+0.79000E+03 372.5 0.129E-12
+0.79000E+03 377.5 0.126E-12
+0.79000E+03 382.5 0.122E-12
+0.79000E+03 387.5 0.119E-12
+0.79000E+03 392.5 0.116E-12
+0.79000E+03 397.5 0.114E-12

From 47692bdbf7e7116ef9ece742bdc4ac519e1c5422 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 13 Jun 2019 11:23:15 -0500
Subject: [PATCH 06/36] Make a few small corrections to factors for the cross
 section calculation for the CBFSpectFuncQELPXSec algorithm

---
 .../QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx        | 8 +++++---
 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx   | 8 ++++++++
 src/Physics/QuasiElastic/XSection/LeptonTensor.cxx        | 8 ++++++--
 3 files changed, 19 insertions(+), 5 deletions(-)

diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
index f919df6c0..47c824790 100644
--- a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
@@ -72,7 +72,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
   TLorentzVector* temp_probeP4 = init_state.GetProbeP4( kRfLab );
   TLorentzVector probeP4 = *temp_probeP4;
   delete temp_probeP4;
-  double E_probe = probeP4.E();
+  double p_probe = probeP4.P();
 
   const TLorentzVector& p4Ni = target.HitNucP4();
   double mNi = target.HitNucMass(); // on-shell initial hit nucleon mass
@@ -89,7 +89,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
 
   // Start xsec calculation with overall phase space factor and
   // scaling factor from XML
-  double xsec = fXSecScale / (4.*kPi*kPi * E_probe * E_NiOnShell
+  double xsec = fXSecScale / (64.*kPi*kPi * p_probe * E_NiOnShell
     * E_lep * E_Nf);
 
   // If we're dealing with a nuclear target, then apply Pauli blocking as
@@ -135,6 +135,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
     fFormFactors.SetModel( fNCFormFactorsModel );
   }
   else if ( proc_info.IsEM() ) {
+    // Lorentz-Heaviside natural units: e^4 = 16 * kPi^2 * kAem2
     coupling_factor = 16. * kPi * kPi * kAem2 / ( Q2*Q2 );
     fFormFactors.SetModel( fEMFormFactorsModel );
   }
@@ -184,7 +185,8 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
     xsec *= genie::utils::EnergyDeltaFunctionSolutionQEL( *interaction );
   }
   else {
-    xsec *= lepP4.P() * lepP4.E();
+    xsec *= lepP4.P() * lepP4.E() * p4Nf.E()
+      / ( 4. * qP4.P() * p4Ni.P() );
   }
 
   // Check whether variable tranformation is needed
diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index 12fc85333..c3f6d1d39 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -106,6 +106,7 @@ genie::FreeNucleonTensor::FreeNucleonTensor(
   fqTilde = probeP4 - p4lep;
   fqTilde.SetE( fqTilde.E() - fEpsilonB );
 
+  // Initialize the on-shell initial nucleon 4-momentum
   fPNiOnShell = TLorentzVector( p3Ni, ENi_on_shell );
 }
 
@@ -195,6 +196,13 @@ std::complex<double> genie::FreeNucleonTensor::Contract(
     double correction = (std::pow(fNucleonMass, 2) / qTilde2) * coeff1 * H1t;
     correction += coeff2 * H2t;
 
+    // Note that the paper from which these current-conservation corrections
+    // were taken, https://arxiv.org/abs/0711.2031, uses a different
+    // normalization convention for the lepton and free nucleon tensors. To
+    // convert to ours (that of https://arxiv.org/pdf/1506.02355.pdf), we need
+    // to multiply by 16.
+    correction *= 16.;
+
     result += correction;
   }
 
diff --git a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
index 27592e101..52900a9e1 100644
--- a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
@@ -6,14 +6,18 @@
 
 genie::LeptonTensor::LeptonTensor(const genie::Interaction& interaction)
 {
-  // Get the initial and final lepton momentum 4-vectors in the lab frame
+  // Make copies of the initial and final lepton 4-momenta in the lab frame
   TLorentzVector* temp_probeP4 = interaction.InitState()
     .GetProbeP4( genie::kRfLab );
   fProbeP4 = *temp_probeP4;
   delete temp_probeP4;
+
   fFSLepP4 = interaction.Kine().FSLeptonP4();
+
   fInitialLeptonPDG = interaction.InitState().ProbePdg();
   fInteractionType = interaction.ProcInfo().InteractionTypeId();
+
+  // Initial lepton mass (needed for EM channel)
   fMLep2 = std::pow(interaction.InitState().Probe()->Mass(), 2);
 }
 
@@ -26,7 +30,7 @@ std::complex<double> genie::LeptonTensor::operator()(genie::TensorIndex_t mu,
 
   std::complex<double> result = 0.;
   if ( fInteractionType == genie::kIntEM ) {
-    result = 4. * (fMLep2*g_mu_nu + common_terms);
+    result = 2. * (fMLep2*g_mu_nu + common_terms);
   }
   else if ( fInteractionType == genie::kIntWeakCC
     || fInteractionType == genie::kIntWeakNC )

From 7733a54b7fe35d2173aec3b56983a714f5e649d5 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <sjgardiner@ucdavis.edu>
Date: Thu, 13 Jun 2019 11:57:05 -0500
Subject: [PATCH 07/36] Temporarily change various configuration settings to
 match the conventions used in Noemi's Fortran code. This will allow a direct
 comparison for validation purposes.

---
 config/CBFSpectFuncQELPXSec.xml     |  4 ++--
 config/CommonParam.xml              | 10 +++++-----
 config/DipoleELFormFactorsModel.xml |  1 +
 config/FermiMomentumTables.xml      |  2 +-
 4 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/config/CBFSpectFuncQELPXSec.xml b/config/CBFSpectFuncQELPXSec.xml
index 1e051e9b0..dfeb1e9c6 100644
--- a/config/CBFSpectFuncQELPXSec.xml
+++ b/config/CBFSpectFuncQELPXSec.xml
@@ -37,8 +37,8 @@ IntegralNucleonBindingMode           alg      No
 
     <param type="alg"  name="PauliBlockerAlg"> genie::PauliBlocker/Default </param>
 
-     <param type="alg"  name="NCFormFactorsAlg"> genie::LwlynSmithFFNC/Default </param>
-     <param type="alg"  name="EMFormFactorsAlg"> genie::LwlynSmithFFEM/Dipole </param>
+    <param type="alg"  name="NCFormFactorsAlg"> genie::LwlynSmithFFNC/Default </param>
+    <param type="alg"  name="EMFormFactorsAlg"> genie::LwlynSmithFFEM/Dipole </param>
 
   </param_set>
 
diff --git a/config/CommonParam.xml b/config/CommonParam.xml
index 2707cbf30..b3670769a 100644
--- a/config/CommonParam.xml
+++ b/config/CommonParam.xml
@@ -246,9 +246,9 @@ Or changing the name of this parameter set
     <!--
 	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 	Proton and neutron anomalous magnetic moments
-    -->
-    <param type="double" name="AnomMagnMoment-P">   2.7930     </param> <!-- 2.7928473 -->
-    <param type="double" name="AnomMagnMoment-N">  -1.913042   </param>
+   -->
+   <param type="double" name="AnomMagnMoment-P">   2.79278     </param> <!-- 2.7928473 -->
+   <param type="double" name="AnomMagnMoment-N">  -1.91315   </param>
 
   </param_set>
 
@@ -266,8 +266,8 @@ Or changing the name of this parameter set
 	- genie::BBA03ELFormFactorsModel, H.Budd, NuINT-02 proceedings
 	- genie::BBA05ELFormFactorsModel, R.Bradford, A.Bodek, H.Budd and J.Arrington, hep-ex/0602017
 	- genie::BBA07ELFormFactorsModel, R.Bradford, A.Bodek, H.Budd and S.Avvakumov, Euro.Phys.J.C53 (2008);[arXiv:0708.1946 [hep-ex]]
-    -->
-    <param type="alg" name="ElasticFormFactorsModel"> genie::BBA07ELFormFactorsModel/Default </param>
+   -->
+   <param type="alg" name="ElasticFormFactorsModel"> genie::DipoleELFormFactorsModel/Default </param>
 
     <!-- Option for turning on Transverse Enhancement by Elastic Form Factor adjustment.
 	 See http://arxiv.org/abs/1405.0583 and http://arxiv.org/abs/1106.0340
diff --git a/config/DipoleELFormFactorsModel.xml b/config/DipoleELFormFactorsModel.xml
index 8bb77d6a6..de2828922 100644
--- a/config/DipoleELFormFactorsModel.xml
+++ b/config/DipoleELFormFactorsModel.xml
@@ -17,6 +17,7 @@ AnomMagnMoment-N      double  No         n Anomalous Magn Moment    CommonParam[
 
   <param_set name="Default"> 
     <param type="string" name="CommonParam"> MagnMoments  </param>
+    <param type="double" name="EL-Mv"> 0.69513 </param>
 
     
 
diff --git a/config/FermiMomentumTables.xml b/config/FermiMomentumTables.xml
index ffe30287f..d31a33f9a 100644
--- a/config/FermiMomentumTables.xml
+++ b/config/FermiMomentumTables.xml
@@ -10,7 +10,7 @@
      <!-- H2    --> <kf nucleus_pdgc="1000010020"> <p> 0.055 </p> <n> 0.055 </n> </kf> <!-- From Eric Christy -->
      <!-- He4   --> <kf nucleus_pdgc="1000020040"> <p> 0.115 </p> <n> 0.115 </n> </kf> <!-- Added -->
      <!-- Li6   --> <kf nucleus_pdgc="1000030060"> <p> 0.169 </p> <n> 0.169 </n> </kf> 
-     <!-- C12   --> <kf nucleus_pdgc="1000060120"> <p> 0.221 </p> <n> 0.221 </n> </kf> 
+     <!-- C12   --> <kf nucleus_pdgc="1000060120"> <p> 0.242 </p> <n> 0.242 </n> </kf> 
      <!-- O16   --> <kf nucleus_pdgc="1000080160"> <p> 0.225 </p> <n> 0.225 </n> </kf> 
      <!-- Mg24  --> <kf nucleus_pdgc="1000120240"> <p> 0.235 </p> <n> 0.235 </n> </kf> 
      <!-- Si28  --> <kf nucleus_pdgc="1000140280"> <p> 0.239 </p> <n> 0.239 </n> </kf> 

From 1f86da5c6b7cf816b61895d638614ee381dd063a Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 13 Jun 2019 16:12:03 -0500
Subject: [PATCH 08/36] Account for the imaginary i factor in the Levi-Civita
 tensor product for the CC/NC lepton tensor expression

---
 src/Physics/QuasiElastic/XSection/LeptonTensor.cxx | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
index 52900a9e1..83b51ee9d 100644
--- a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
@@ -56,7 +56,8 @@ std::complex<double> genie::LeptonTensor::operator()(genie::TensorIndex_t mu,
 std::complex<double> genie::LeptonTensor::LeviCivitaProduct(
   genie::TensorIndex_t mu, genie::TensorIndex_t nu) const
 {
-  return Rank2LorentzTensorI::LeviCivitaProduct(mu, nu, fFSLepP4, fProbeP4);
+  return std::complex<double>( 0.,
+    Rank2LorentzTensorI::LeviCivitaProduct(mu, nu, fProbeP4, fFSLepP4) );
 }
 
 std::complex<double> genie::LeptonTensor::Contract(

From 5272f30b5b7b3ab429f3b1a8b918d437417b5bff Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 13 Jun 2019 16:28:42 -0500
Subject: [PATCH 09/36] Fix typo when setting the axial second-class current
 form factor in FreeNucleonTensor.cxx

---
 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index c3f6d1d39..44cd35572 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -88,7 +88,7 @@ genie::FreeNucleonTensor::FreeNucleonTensor(
   fF3V = ff.F3V();
    fFA = ff.FA();
    fFP = ff.Fp();
-  fF3A = ff.F3V();
+  fF3A = ff.F3A();
 
   double ENi = interaction.InitState().Tgt().HitNucP4().E();
   TVector3 p3Ni = interaction.InitState().Tgt().HitNucP4().Vect();

From 0513f128b3b0d7bfd70f3677600d4dc19b5d4404 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Fri, 14 Jun 2019 15:33:09 -0500
Subject: [PATCH 10/36] Fix overall factor in the FreeNucleonTensor elements.
 The expression in paper used to write the code is off by a factor of two.

---
 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index 44cd35572..316b084af 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -163,8 +163,13 @@ std::complex<double> genie::FreeNucleonTensor::operator()(
   result += (0.5*fF2V*fF3V/M2 - q2*fF3A*fFP/M2 - 2.*fF3A*fFA
     + 2.*fF1V*fF3V) * (p_mu*q_nu + q_mu*p_nu + q_mu*q_nu);
 
-  // Overall factor
-  result *= 4.;
+  // ** Overall factor **
+  // Note that the expression I used to write this code (equation (A1) in the appendix of
+  // https://arxiv.org/pdf/1506.02355.pdf) is off by a factor of two from the definition of J^{\mu\nu}
+  // (see equation equation 9 therein) given earlier in the paper. We're using FreeNucleonTensor = J^{\mu\nu}
+  // as defined in equation 9, so the overall factor that should be used is 2, not 4. You can verify this
+  // yourself, e.g., try computing the Fp^2 term from the Dirac traces.
+  result *= 2.;
 
   return result;
 }

From 373a80b032310ada60a64069023aaf6bf1ca761a Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 17 Oct 2019 15:42:39 -0500
Subject: [PATCH 11/36] Move the testing configuration for the CBF spectral
 function model into a new tune (N19_00a_00_000) and restore the old
 configuration files in the common area.

---
 config/CBFSpectFuncQELPXSec.xml             |   3 +-
 config/CommonParam.xml                      |  10 +-
 config/DipoleELFormFactorsModel.xml         |   1 -
 config/FermiMomentumTables.xml              |   2 +-
 config/N19_00a/CommonParam.xml              | 332 ++++++++++++++++++++
 config/N19_00a/DipoleELFormFactorsModel.xml |  27 ++
 config/N19_00a/FermiMomentumTables.xml      |  27 ++
 config/N19_00a/ModelConfiguration.xml       |  58 ++++
 config/N19_00a/TuneGeneratorList.xml        |  27 ++
 9 files changed, 479 insertions(+), 8 deletions(-)
 create mode 100644 config/N19_00a/CommonParam.xml
 create mode 100644 config/N19_00a/DipoleELFormFactorsModel.xml
 create mode 100644 config/N19_00a/FermiMomentumTables.xml
 create mode 100644 config/N19_00a/ModelConfiguration.xml
 create mode 100644 config/N19_00a/TuneGeneratorList.xml

diff --git a/config/CBFSpectFuncQELPXSec.xml b/config/CBFSpectFuncQELPXSec.xml
index dfeb1e9c6..660d2c968 100644
--- a/config/CBFSpectFuncQELPXSec.xml
+++ b/config/CBFSpectFuncQELPXSec.xml
@@ -30,10 +30,11 @@ IntegralNucleonBindingMode           alg      No
     <param type="string"  name="CommonParam"> CKM </param>
 
     <param type="double" name="QEL-CC-XSecScale"> 1.000 </param>
+    <param type="double" name="IntegralNuclearInfluenceCutoffEnergy"> 10.0 </param>
 
     <param type="alg"  name="XSec-Integrator"> genie::NewQELXSec/Default </param>
     <param type="alg"  name="IntegralNuclearModel"> genie::SpectralFunc/Default </param>
-    <param type="string" name="IntegralNucleonBindingMode"> kUseNuclearModel </param>
+    <param type="string" name="IntegralNucleonBindingMode"> UseNuclearModel </param>
 
     <param type="alg"  name="PauliBlockerAlg"> genie::PauliBlocker/Default </param>
 
diff --git a/config/CommonParam.xml b/config/CommonParam.xml
index b3670769a..2707cbf30 100644
--- a/config/CommonParam.xml
+++ b/config/CommonParam.xml
@@ -246,9 +246,9 @@ Or changing the name of this parameter set
     <!--
 	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 	Proton and neutron anomalous magnetic moments
-   -->
-   <param type="double" name="AnomMagnMoment-P">   2.79278     </param> <!-- 2.7928473 -->
-   <param type="double" name="AnomMagnMoment-N">  -1.91315   </param>
+    -->
+    <param type="double" name="AnomMagnMoment-P">   2.7930     </param> <!-- 2.7928473 -->
+    <param type="double" name="AnomMagnMoment-N">  -1.913042   </param>
 
   </param_set>
 
@@ -266,8 +266,8 @@ Or changing the name of this parameter set
 	- genie::BBA03ELFormFactorsModel, H.Budd, NuINT-02 proceedings
 	- genie::BBA05ELFormFactorsModel, R.Bradford, A.Bodek, H.Budd and J.Arrington, hep-ex/0602017
 	- genie::BBA07ELFormFactorsModel, R.Bradford, A.Bodek, H.Budd and S.Avvakumov, Euro.Phys.J.C53 (2008);[arXiv:0708.1946 [hep-ex]]
-   -->
-   <param type="alg" name="ElasticFormFactorsModel"> genie::DipoleELFormFactorsModel/Default </param>
+    -->
+    <param type="alg" name="ElasticFormFactorsModel"> genie::BBA07ELFormFactorsModel/Default </param>
 
     <!-- Option for turning on Transverse Enhancement by Elastic Form Factor adjustment.
 	 See http://arxiv.org/abs/1405.0583 and http://arxiv.org/abs/1106.0340
diff --git a/config/DipoleELFormFactorsModel.xml b/config/DipoleELFormFactorsModel.xml
index de2828922..8bb77d6a6 100644
--- a/config/DipoleELFormFactorsModel.xml
+++ b/config/DipoleELFormFactorsModel.xml
@@ -17,7 +17,6 @@ AnomMagnMoment-N      double  No         n Anomalous Magn Moment    CommonParam[
 
   <param_set name="Default"> 
     <param type="string" name="CommonParam"> MagnMoments  </param>
-    <param type="double" name="EL-Mv"> 0.69513 </param>
 
     
 
diff --git a/config/FermiMomentumTables.xml b/config/FermiMomentumTables.xml
index d31a33f9a..ffe30287f 100644
--- a/config/FermiMomentumTables.xml
+++ b/config/FermiMomentumTables.xml
@@ -10,7 +10,7 @@
      <!-- H2    --> <kf nucleus_pdgc="1000010020"> <p> 0.055 </p> <n> 0.055 </n> </kf> <!-- From Eric Christy -->
      <!-- He4   --> <kf nucleus_pdgc="1000020040"> <p> 0.115 </p> <n> 0.115 </n> </kf> <!-- Added -->
      <!-- Li6   --> <kf nucleus_pdgc="1000030060"> <p> 0.169 </p> <n> 0.169 </n> </kf> 
-     <!-- C12   --> <kf nucleus_pdgc="1000060120"> <p> 0.242 </p> <n> 0.242 </n> </kf> 
+     <!-- C12   --> <kf nucleus_pdgc="1000060120"> <p> 0.221 </p> <n> 0.221 </n> </kf> 
      <!-- O16   --> <kf nucleus_pdgc="1000080160"> <p> 0.225 </p> <n> 0.225 </n> </kf> 
      <!-- Mg24  --> <kf nucleus_pdgc="1000120240"> <p> 0.235 </p> <n> 0.235 </n> </kf> 
      <!-- Si28  --> <kf nucleus_pdgc="1000140280"> <p> 0.239 </p> <n> 0.239 </n> </kf> 
diff --git a/config/N19_00a/CommonParam.xml b/config/N19_00a/CommonParam.xml
new file mode 100644
index 000000000..b3670769a
--- /dev/null
+++ b/config/N19_00a/CommonParam.xml
@@ -0,0 +1,332 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<!--
+***************************************************************************************************
+This file defines parameters sets for parameters which are common between algorithms and therefore
+has to be the same for those parameters to be meaningful.
+This is file is read from the AlgConfigPool and the parameters set are expected to be used by the
+algorithms to configure these common parameters.
+
+Author:
+Costas Andreopoulos <costas.andreopoulos \at stfc.ac.uk>
+STFC, Rutherford Appleton Laboratory
+
+and
+Marco Roda <marco.roda \at liverpool.ac.uk>
+University of Liverpool
+***************************************************************************************************
+-->
+
+
+
+<common_Param_list>
+
+
+  <param_set name="Tunable">
+    <!-- Reserved register for tuning -->
+
+    <!-- <param type="double" name="DIS-XSecScale">    1.032 </param> -->
+    <!-- <param type="double" name="MEC-CC-XSecScale"> 1.000 </param> -->
+
+
+  </param_set>
+
+
+  <param_set name="WeakInt">
+    <param type="double" name="WeinbergAngle"> 0.501716712132 </param> <!-- 0.501568 -->
+
+  </param_set>
+
+  <param_set name="StrongInt">
+    <param type="double" name="SU3-D"> 0.804 </param>
+    <param type="double" name="SU3-F"> 0.463 </param>
+
+  </param_set>
+
+
+  <param_set name="CKM">
+    <!-- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	 CKM quark mixing parameters
+	 Chinese Physics C Vol.40, No. 10 (2016) 100001
+	 Review of Particle Physics
+    -->
+    <param type="double" name="CKM-Vud">  0.97417  </param>
+    <param type="double" name="CKM-Vus">  0.2248   </param>
+    <param type="double" name="CKM-Vcd">  0.220    </param>  <!-- 0.2239 -->
+    <param type="double" name="CKM-Vcs">  0.995    </param>
+
+    <param type="double" name="CabibboAngle">  0.227780466682 </param> <!-- 0.226893 -->
+
+  </param_set>
+
+  <param_set name="NUCL">
+
+    <!-- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	 NUCL-Ro (in fm) is a scale parameter driving the effective nuclear sizes (Ro in R=Ro*A^1/3)
+    -->
+    <param type="double" name="NUCL-R0"> 1.4 </param>
+    <param type="double" name="NUCL-NR"> 3.0 </param>
+
+  </param_set>
+
+  <param_set name="Masses">
+    <param type="double" name="Charm-Mass"> 1.430  </param> <!-- GeV -->
+  </param_set>
+
+
+  <param_set name="NonResBackground">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	RES/DIS joining scheme
+	At this point there is a single scheme, the one originally developed in neugen3.
+	For W >  Wcut : RES -> 0,   +  DIS                -> full
+	For W <= Wcut : RES -> full + `DIS' (non-RES bkg) -> modified by DIS-HMultWgt-* params
+	-
+	- ...
+
+    -->
+    <param type="bool"   name="UseDRJoinScheme"> true </param>
+    <param type="double" name="Wcut">            1.7  </param>
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	NEUGEN parameters applied to DIS hadronic multiplicity distributions
+	to avoid 2-ble counting with RES
+    -->
+    <param type="double" name="DIS-HMultWgt-vp-CC-m2">  0.100  </param>
+    <param type="double" name="DIS-HMultWgt-vp-CC-m3">  1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vp-NC-m2">  0.100  </param>
+    <param type="double" name="DIS-HMultWgt-vp-NC-m3">  1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vn-CC-m2">  0.300  </param>
+    <param type="double" name="DIS-HMultWgt-vn-CC-m3">  1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vn-NC-m2">  0.300  </param>
+    <param type="double" name="DIS-HMultWgt-vn-NC-m3">  1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vbp-CC-m2"> 0.300  </param>
+    <param type="double" name="DIS-HMultWgt-vbp-CC-m3"> 1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vbp-NC-m2"> 0.300  </param>
+    <param type="double" name="DIS-HMultWgt-vbp-NC-m3"> 1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vbn-CC-m2"> 0.100  </param>
+    <param type="double" name="DIS-HMultWgt-vbn-CC-m3"> 1.000  </param>
+    <param type="double" name="DIS-HMultWgt-vbn-NC-m2"> 0.100  </param>
+    <param type="double" name="DIS-HMultWgt-vbn-NC-m3"> 1.000  </param>
+
+  </param_set>
+
+
+  <param_set name="FermiGas">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Parameters related with GENIE's Fermi Gas (RFG) model implementation
+	- RFG-Momentum-CutOff is a momentum cut-off for the NN correlation tail
+	- RFG-NucRemovalE@Pdg=10LZZZAAAI is the removal energy for the nucleus with the specified pdg
+	code. If none is used then the average binding energy will be computed from Wapstra's semi-
+	empirical formula.
+	Currently, if you explicitly specify a binding energy for a nucleus then the same value will
+	be used for all isotopes.
+    -->
+    <param type="double" name="RFG-MomentumCutOff">              0.5000 </param>
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000030060">  0.0170 </param> <!-- Li6    -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000060120">  0.0250 </param> <!-- C12    -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000080160">  0.0270 </param> <!-- O16    -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000120240">  0.0320 </param> <!-- Mg24   -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000180400">  0.0295 </param> <!-- Ar40   -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000200400">  0.0280 </param> <!-- Ca40   -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000220480">  0.0300 </param> <!-- Ti48  -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000260560">  0.0360 </param> <!-- Fe56   -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000280580">  0.0360 </param> <!-- Ni58   -->
+    <param type="double" name="RFG-NucRemovalE@Pdg=1000822080">  0.0440 </param> <!-- Pb208  -->
+    <param type="bool"   name="RFG-UseParametrization">          false  </param>
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Table of Fermi momentum (kF) constants for various nuclei
+	The tables can be found in $GENIE/config/FermiMomentumTables.xml
+    -->
+    <param type="string" name="FermiMomentumTable"> Default </param>
+
+  </param_set>
+
+
+  <!--
+      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+      INTRANUKE-specific parameters:
+      - Mode options are: hA, hN
+      - NucRemovalE is the binding E to subtract from cascade nucleons (in GeV)
+      - typical values for pion, nucleon DelR are 0.5, 0.7 (hA) and 0.2, 0.2 (hN)
+
+Probably these should all be moved in the local configurations
+  -->
+
+  <param_set name="INUKE">
+    <param type="double" name="INUKE-NucRemovalE">       0.00  </param>
+    <param type="double" name="INUKE-HadStep">           0.05  </param>
+    <param type="double" name="INUKE-NucAbsFac">         1.0   </param>
+    <param type="double" name="INUKE-NucQEFac">          1.0   </param>
+    <param type="double" name="INUKE-NucCEXFac">         1.0   </param>
+    <param type="double" name="INUKE-Energy_Pre_Eq">     0.041 </param>
+    <param type="double" name="INUKE-FermiFac">          1.0   </param>
+    <param type="double" name="INUKE-FermiMomentum">     0.250 </param>
+    <param type="bool"   name="INUKE-DoFermi">           true  </param>
+    <param type="bool"   name="INUKE-DoCompoundNucleus"> true  </param>
+    <param type="bool"   name="INUKE-XsecNNCorr">        true  </param>
+  </param_set>
+
+  <param_set name="HAINUKE">
+    <param type="double" name="HAINUKE-DelRPion">        0.5   </param>
+    <param type="double" name="HAINUKE-DelRNucleon">     0.7   </param>
+  </param_set>
+
+  <param_set name="HNINUKE">
+    <param type="double" name="HNINUKE-DelRPion">        0.0   </param>
+    <param type="double" name="HNINUKE-DelRNucleon">     0.0   </param>
+    <param type="bool"   name="HNINUKE-UseOset">         true  </param>
+  </param_set>
+
+  <param_set name="Coherent">
+
+    <param type="double" name="COH-Ro"> 1.000 </param>
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Minimum and maximum considered Q^2 for Berger-Sehgal coherent reactions when estimating
+	the max cross section.
+	Units in GeV^2.
+    -->
+    <param type="double" name="COH-Q2-min"> 0.000 </param>
+    <param type="double" name="COH-Q2-max"> 1.000 </param>
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Maximum considered t for Berger-Sehgal coherent reactions when estimating the
+	max cross section.
+	Units in GeV^2.
+    -->
+    <param type="double" name="COH-t-max"> 0.250 </param>
+
+  </param_set>
+
+
+  <param_set name="Diffractive">
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Slope parameter beta for diffractive scattering (GeV^-2) (b ~ 0.333 * nucleon_size^2)
+    -->
+    <param type="double" name="DFR-Beta"> 7.0 </param>
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Maximum considered t for diffractive scattering reactions when estimating the max cross section.
+	Units in GeV^2.
+
+This value is read in KpHase space!!! It's mental, but we have to be careful before removing this
+Or changing the name of this parameter set
+    -->
+    <param type="double" name="DFR-t-max"> 0.35 </param>
+
+  </param_set>
+
+  <param_set name="QuasiElastic">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Value of axial form factor at Q2=0
+    -->
+    <param type="double" name="QEL-FA0"> -1.2670 </param>
+
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Axial and vector masses for quasi-elastic scattering
+    -->
+    <param type="double" name="QEL-Ma"> 0.990 </param>
+    <param type="double" name="QEL-Mv"> 0.840 </param>
+
+  </param_set>
+
+  <param_set name="MagnMoments">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Proton and neutron anomalous magnetic moments
+   -->
+   <param type="double" name="AnomMagnMoment-P">   2.79278     </param> <!-- 2.7928473 -->
+   <param type="double" name="AnomMagnMoment-N">  -1.91315   </param>
+
+  </param_set>
+
+  <param_set name="MultiNucleons">
+    <!--  Q3 max for 2p2h model    -->
+    <param type="double" name="NSV-Q3Max"> 1.2 </param>
+  </param_set>
+
+  <param_set name="ElasticFF">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Elastic form factors used for QEL CC cross section calculation.
+	Options are:
+	- genie::DipoleELFormFactorsModel
+	- genie::BBA03ELFormFactorsModel, H.Budd, NuINT-02 proceedings
+	- genie::BBA05ELFormFactorsModel, R.Bradford, A.Bodek, H.Budd and J.Arrington, hep-ex/0602017
+	- genie::BBA07ELFormFactorsModel, R.Bradford, A.Bodek, H.Budd and S.Avvakumov, Euro.Phys.J.C53 (2008);[arXiv:0708.1946 [hep-ex]]
+   -->
+   <param type="alg" name="ElasticFormFactorsModel"> genie::DipoleELFormFactorsModel/Default </param>
+
+    <!-- Option for turning on Transverse Enhancement by Elastic Form Factor adjustment.
+	 See http://arxiv.org/abs/1405.0583 and http://arxiv.org/abs/1106.0340
+    -->
+    <param type="bool" name="UseElFFTransverseEnhancement">  false                              </param>
+    <param type="alg" name="TransverseEnhancement"> genie::TransverseEnhancementFFModel/Default </param>
+
+  </param_set>
+
+  <param_set name="Resonances">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Default list of baryon resonances included in cross section models and generation threads
+    -->
+    <param type="string" name="ResonanceNameList">
+      P33(1232),S11(1535),D13(1520),S11(1650),D13(1700),D15(1675),
+      S31(1620),D33(1700),P11(1440),P33(1600),P13(1720),F15(1680),
+      P31(1910),P33(1920),F35(1905),F37(1950),P11(1710),F17(1970)
+    </param>
+
+  </param_set>
+
+  <param_set name="Lepton">
+    <param type="bool" name="ApplyCoulombCorrection"> false </param>
+
+  </param_set>
+
+
+  <param_set name="BoostedDarkMatter">
+    <!--
+        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+        Set the coupling of dark matter to nucleons
+    -->
+    <param type="double" name="ZpCoupling"> 0.1 </param>
+
+  </param_set>
+
+
+  <param_set name="KNO2Pythia">
+    <!--
+	
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	Invariant mass window for the transition from KNO model to PYTHIA
+    -->
+
+    <param type="double" name="KNO2PYTHIA-Wmin">  2.30 </param>
+    <param type="double" name="KNO2PYTHIA-Wmax">  3.00 </param>
+  </param_set>
+
+
+
+  <param_set name="Validation">
+    <!--
+	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+	GENIE validity range
+    -->
+    <param type="double" name="GVLD-Emin">    0.010  </param>
+    <param type="double" name="GVLD-Emax"> 1000.000  </param>
+
+  </param_set>
+
+</common_Param_list>
diff --git a/config/N19_00a/DipoleELFormFactorsModel.xml b/config/N19_00a/DipoleELFormFactorsModel.xml
new file mode 100644
index 000000000..033e499a2
--- /dev/null
+++ b/config/N19_00a/DipoleELFormFactorsModel.xml
@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<alg_conf>
+
+<!--
+Configuration sets for the Dipole elastic form factors model.
+
+Algorithm Configurable Parameters:
+.........................................................................................
+Name                  Type    Optional   Comment                    Default
+.........................................................................................
+EL-Mv                 double  No         Vector Mass                
+AnomMagnMoment-P      double  No         p Anomalous Magn Moment    CommonParam[MagnMoments]
+AnomMagnMoment-N      double  No         n Anomalous Magn Moment    CommonParam[MagnMoments]
+
+-->
+
+  <param_set name="Default">
+    <param type="string" name="CommonParam"> MagnMoments  </param>
+    <param type="double" name="EL-Mv"> 0.69513 </param>
+
+    
+
+  </param_set>
+
+</alg_conf>
+
diff --git a/config/N19_00a/FermiMomentumTables.xml b/config/N19_00a/FermiMomentumTables.xml
new file mode 100644
index 000000000..53eebc3c4
--- /dev/null
+++ b/config/N19_00a/FermiMomentumTables.xml
@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<!-- 
+  In the Default set we have the kf values copied from NeuGEN.
+-->
+
+<fermi_momentum_const>
+
+  <kf_table name="Default">
+     <!-- H2    --> <kf nucleus_pdgc="1000010020"> <p> 0.055 </p> <n> 0.055 </n> </kf> <!-- From Eric Christy -->
+     <!-- He4   --> <kf nucleus_pdgc="1000020040"> <p> 0.115 </p> <n> 0.115 </n> </kf> <!-- Added -->
+     <!-- Li6   --> <kf nucleus_pdgc="1000030060"> <p> 0.169 </p> <n> 0.169 </n> </kf> 
+     <!-- C12   --> <kf nucleus_pdgc="1000060120"> <p> 0.242 </p> <n> 0.242 </n> </kf>
+     <!-- O16   --> <kf nucleus_pdgc="1000080160"> <p> 0.225 </p> <n> 0.225 </n> </kf> 
+     <!-- Mg24  --> <kf nucleus_pdgc="1000120240"> <p> 0.235 </p> <n> 0.235 </n> </kf> 
+     <!-- Si28  --> <kf nucleus_pdgc="1000140280"> <p> 0.239 </p> <n> 0.239 </n> </kf> 
+     <!-- Ar40  --> <kf nucleus_pdgc="1000180400"> <p> 0.242 </p> <n> 0.259 </n> </kf> 
+     <!-- Ca40  --> <kf nucleus_pdgc="1000200400"> <p> 0.251 </p> <n> 0.251 </n> </kf> 
+     <!-- Fe56  --> <kf nucleus_pdgc="1000260560"> <p> 0.251 </p> <n> 0.263 </n> </kf> 
+     <!-- Ni58  --> <kf nucleus_pdgc="1000280580"> <p> 0.257 </p> <n> 0.263 </n> </kf> 
+     <!-- Sn120 --> <kf nucleus_pdgc="1000501200"> <p> 0.245 </p> <n> 0.274 </n> </kf> 
+     <!-- Ta181 --> <kf nucleus_pdgc="1000731810"> <p> 0.247 </p> <n> 0.281 </n> </kf>
+     <!-- Pb208 --> <kf nucleus_pdgc="1000822080"> <p> 0.245 </p> <n> 0.283 </n> </kf> 
+  </kf_table>
+
+</fermi_momentum_const>
+
diff --git a/config/N19_00a/ModelConfiguration.xml b/config/N19_00a/ModelConfiguration.xml
new file mode 100644
index 000000000..f1f9cb965
--- /dev/null
+++ b/config/N19_00a/ModelConfiguration.xml
@@ -0,0 +1,58 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<global_param_list>
+
+ <param_set name="Default">
+
+ <!--
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  Nuclear model selection.
+  The 'NuclearModel' option defines the default basic model which should work for _any_ nuclei
+  (typically a Fermi Gas model with the Bodek-Ritchie NN corellatin tail). Refinements for specific
+  nuclei are possible, by specifying the 'NuclearModel@Pdg=10LZZZAAAI' option.
+  Currently the same nuclear model is forced for all isotopes.
+ -->
+
+  <!-- Use a local Fermi gas for nuclei for which GENIE does not have a tabulated spectral function -->
+  <param type="alg"  name="NuclearModel"> genie::LocalFGM/Default </param>
+
+  <!-- For 12C and 56Fe, use the spectral function -->
+  <param type="alg" name="NuclearModel@Pdg=1000060120"> genie::SpectralFunc/Default </param>
+  <param type="alg" name="NuclearModel@Pdg=1000260560"> genie::SpectralFunc/Default </param>
+
+ <!--
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  Intranuclear rescattering
+  Use the HadronTransportEnable option to toggle intranuclear rescattering on/off.
+  Also, set the preferred hadron transport model.
+  Options include:
+   - genie::HAIntranuke/Default
+   - genie::HAIntranuke2018/Default
+   - genie::HNIntranuke2018/Default
+   - genie::HNIntranuke2018/OsetOff
+  -->
+  <param type="bool" name="HadronTransp-Enable"> true </param>
+  <param type="alg"  name="HadronTransp-Model">  genie::HAIntranuke2018/Default  </param>
+
+
+ <!--
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  Specify which cross section model is to be used by each GENIE event generation thread.
+  The parameter name is build as: "XSecModel@[name of thread]"
+  -->
+
+
+  <!-- New QE model based on SF treatment. For CCQE, it's essentially equivalent to the Llewellyn-Smith model  -->
+  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-CC"> genie::CBFSpectFuncQELPXSec/Dipole </param>
+  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-NC"> genie::CBFSpectFuncQELPXSec/Dipole </param>
+  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-EM"> genie::CBFSpectFuncQELPXSec/Dipole </param>
+
+  <!--
+    <param type="alg" name="XSecModel@genie::EventGenerator/MEC-CC"> genie::EmpiricalMECPXSec2015/Default </param>
+    <param type="alg" name="XSecModel@genie::EventGenerator/MEC-NC"> genie::EmpiricalMECPXSec2015/Default </param>
+    <param type="alg" name="XSecModel@genie::EventGenerator/MEC-EM"> genie::EmpiricalMECPXSec2015/Default </param>
+  -->
+
+ </param_set>
+
+</global_param_list>
diff --git a/config/N19_00a/TuneGeneratorList.xml b/config/N19_00a/TuneGeneratorList.xml
new file mode 100644
index 000000000..5be4c7e02
--- /dev/null
+++ b/config/N19_00a/TuneGeneratorList.xml
@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<tune_generator_list>
+
+<!--
+Configurable Parameters:
+..........................................................................................................................
+Name                        Type    Opt  Comment                                               Default
+..........................................................................................................................
+NGenerators                 int     No
+Generator-%d                alg     No
+-->
+
+  <param_set name="Default"> 
+     <param type="int" name="NGenerators">   3                              </param>
+     <param type="alg" name="Generator-0">   genie::EventGenerator/QEL-CC   </param>
+     <param type="alg" name="Generator-1">   genie::EventGenerator/QEL-NC   </param>
+     <param type="alg" name="Generator-2">   genie::EventGenerator/QEL-EM   </param>
+     <!--
+       <param type="alg" name="Generator-3">  genie::EventGenerator/MEC-CC  </param>
+       <param type="alg" name="Generator-4">  genie::EventGenerator/MEC-NC  </param>
+       <param type="alg" name="Generator-5">  genie::EventGenerator/MEC-EM  </param>
+     -->
+  </param_set>
+
+</tune_generator_list>
+

From 6002301a3885ad3974046beb90d2d1e5016ca6dd Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 17 Oct 2019 17:10:39 -0500
Subject: [PATCH 12/36] Fix a problem with Mandelstam s = NaN in the case of
 very high-momentum bound nucleons. Also silence an unneeded warning message
 in CBFSpecFuncQELPXSec::XSec.

---
 .../QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx    |  2 +-
 src/Physics/QuasiElastic/XSection/QELUtils.cxx        | 11 +++++++++++
 2 files changed, 12 insertions(+), 1 deletion(-)

diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
index 47c824790..d6cde0eb0 100644
--- a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
@@ -151,7 +151,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
   // The corrected energy transfer qTilde0 needs to be nonnegative
   // to enforce energy conservation
   if ( qTildeP4.E() < 0. ) {
-    LOG("CBFSpectFunc", pWARN) << "q0Tilde < 0," << " returning xsec = 0";
+    LOG("CBFSpectFunc", pDEBUG) << "q0Tilde < 0," << " returning xsec = 0";
     return 0.;
   }
 
diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index f697fb542..49e232a2f 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -14,6 +14,10 @@
 #include <limits>
 #include <sstream>
 
+// Needed for isnan() from C standard library
+// TODO: Replace this with std::isnan() when GENIE updates to C++11
+#include <math.h>
+
 // ROOT includes
 #include "TDatabasePDG.h"
 #include "TLorentzVector.h"
@@ -114,6 +118,13 @@ double genie::utils::ComputeFullQELPXSec(genie::Interaction* interaction,
   // Mandelstam s for the probe/hit nucleon system
   double s = std::pow( interaction->InitState().CMEnergy(), 2 );
 
+  // A very high-momentum bound nucleon (which is far off the mass shell)
+  // can have a momentum greater than its total energy. This leads to numerical
+  // issues when s goes negative (and thus sqrt(s) is imaginary). In such cases,
+  // Mandelstam s as calculated above will be NaN. This corresponds to being
+  // below threshold, so just return zero.
+  if ( isnan(s) ) return 0.;
+
   // Return a differential cross section of zero if we're below threshold (and
   // therefore need to sample a new event)
   if ( std::sqrt(s) < lepMass + mNf ) return 0.;

From 6d8daa5162fc456372e820b0bedf729d8b823767 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 17 Oct 2019 18:57:54 -0500
Subject: [PATCH 13/36] Temporarily remove the (small) current-conservation
 correction in the free nucleon tensor contraction for EMQE scattering. Also
 enforce that the hit nucleon invariant mass is positive in the full
 differential cross section calculation. Switch to using the new
 QELEventGenerator (as intended) for quasielastic CC, NC, and EM scattering in
 the N19_00a_00_000 model set.

---
 config/N19_00a/EventGenerator.xml             | 556 ++++++++++++++++++
 .../XSection/FreeNucleonTensor.cxx            |   5 +-
 .../QuasiElastic/XSection/QELUtils.cxx        |  17 +-
 3 files changed, 566 insertions(+), 12 deletions(-)
 create mode 100644 config/N19_00a/EventGenerator.xml

diff --git a/config/N19_00a/EventGenerator.xml b/config/N19_00a/EventGenerator.xml
new file mode 100644
index 000000000..7ad4303f6
--- /dev/null
+++ b/config/N19_00a/EventGenerator.xml
@@ -0,0 +1,556 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<alg_conf>
+
+<!--
+Configuration for the EventGenerator EventRecordVisitorI
+
+Configurable Parameters:
+.............................................................................................................................
+Name                        Type    Opt  Comment                                               Default
+.............................................................................................................................
+VldContext                  string  No   Validity context
+NModules                    int     No   Number of event generation modules in thread
+Module-i                    alg     No   Event generation module i (0...NModules)
+ILstGen                     alg     No   Interaction list generator (list of interactions that
+                                         can be generated by the event generation thread)
+XSecModel                   alg     Yes  Cross section model used at the thread                 GPL: XSecModel@[thread name]
+-->
+
+  <!--
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  Standard threads
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  -->
+
+  <param_set name="NucleonDecay">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   4                                                    </param>
+     <param type="alg"    name="Module-0">   genie::NucleonDecayPrimaryVtxGenerator/Default       </param>
+     <param type="alg"    name="Module-1">   genie::UnstableParticleDecayer/BeforeHadronTransport </param>
+     <param type="alg"    name="Module-2">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-3">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DummyInteractionListGenerator/Default         </param>
+  </param_set>
+
+  <param_set name="NNBarOsc">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   4                                                    </param>
+     <param type="alg"    name="Module-0">   genie::NNBarOscPrimaryVtxGenerator/Default           </param>
+     <param type="alg"    name="Module-1">   genie::UnstableParticleDecayer/BeforeHadronTransport </param>
+     <param type="alg"    name="Module-2">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-3">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::NNBarOscDummyInteractionListGenerator/Default </param>
+  </param_set>
+
+
+  <!-- Boosted Dark Matter module -->
+
+  <param_set name="DMELv0">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   12                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::QELKinematicsGenerator/NC-Default              </param>
+     <param type="alg"    name="Module-4">   genie::DMELOutgoingDarkGenerator/Default              </param>
+     <param type="alg"    name="Module-5">   genie::QELHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::PauliBlocker/Default                           </param>
+     <param type="alg"    name="Module-7">   genie::UnstableParticleDecayer/BeforeHadronTransport  </param>
+     <param type="alg"    name="Module-8">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-9">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-10">  genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-11">  genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::DMELInteractionListGenerator/DM-Default        </param>
+  </param_set>
+
+  <param_set name="DMELv2">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   12                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::QELKinematicsGenerator/NC-Default              </param>
+     <param type="alg"    name="Module-4">   genie::DMELOutgoingDarkGenerator/Default              </param>
+     <param type="alg"    name="Module-5">   genie::QELHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::PauliBlocker/Default                           </param>
+     <param type="alg"    name="Module-7">   genie::UnstableParticleDecayer/BeforeHadronTransport  </param>
+     <param type="alg"    name="Module-8">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-9">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-10">  genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-11">  genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::DMELInteractionListGenerator/DM-Default        </param>
+  </param_set>
+
+  <param_set name="DMDISv0">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::DMDISKinematicsGenerator/NC-Default            </param>
+     <param type="alg"    name="Module-4">   genie::DMDISOutgoingDarkGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::DMDISInteractionListGenerator/DM-Default       </param>
+  </param_set>
+
+    <param_set name="DMDISv2">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::DMDISKinematicsGenerator/NC-Default            </param>
+     <param type="alg"    name="Module-4">   genie::DMDISOutgoingDarkGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::DMDISInteractionListGenerator/DM-Default       </param>
+  </param_set>
+
+
+
+  <!-- CC, NC, and EM all use the new QELEventGenerator for the N19_00a_00_000 model set -->
+  <param_set name="QEL-CC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   7                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::QELEventGenerator/Default                     </param>
+     <param type="alg"    name="Module-3">   genie::UnstableParticleDecayer/BeforeHadronTransport </param>
+     <param type="alg"    name="Module-4">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-5">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-6">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::QELInteractionListGenerator/CC-Default        </param>
+   </param_set>
+
+  <param_set name="QEL-NC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   7                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::QELEventGenerator/NC-Default                  </param>
+     <param type="alg"    name="Module-3">   genie::UnstableParticleDecayer/BeforeHadronTransport </param>
+     <param type="alg"    name="Module-4">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-5">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-6">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::QELInteractionListGenerator/NC-Default        </param>
+   </param_set>
+
+  <param_set name="QEL-EM">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   8                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::QELEventGenerator/EM-Default                  </param>
+     <param type="alg"    name="Module-3">   genie::PauliBlocker/Default                          </param>
+     <param type="alg"    name="Module-4">   genie::UnstableParticleDecayer/BeforeHadronTransport </param>
+     <param type="alg"    name="Module-5">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-6">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-7">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::QELInteractionListGenerator/EM-Default        </param>
+  </param_set>
+
+  <param_set name="QEL-CC-LAMBDA">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   9                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::QELKinematicsGenerator/CC-Lambda-Default       </param>
+     <param type="alg"    name="Module-4">   genie::QELPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::QELHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::QELInteractionListGenerator/CC-Lambda-Default  </param>
+  </param_set>
+
+  <param_set name="DIS-CC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::DISKinematicsGenerator/CC-Default             </param>
+     <param type="alg"    name="Module-4">   genie::DISPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DISInteractionListGenerator/CC-Default        </param>
+  </param_set>
+
+  <param_set name="DIS-NC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::DISKinematicsGenerator/NC-Default             </param>
+     <param type="alg"    name="Module-4">   genie::DISPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DISInteractionListGenerator/NC-Default        </param>
+  </param_set>
+
+  <param_set name="DIS-EM">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::DISKinematicsGenerator/EM-Default             </param>
+     <param type="alg"    name="Module-4">   genie::DISPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DISInteractionListGenerator/EM-Default        </param>
+  </param_set>
+
+  <param_set name="RES-CC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::RESKinematicsGenerator/RES                     </param>
+     <param type="alg"    name="Module-4">   genie::RESPrimaryLeptonGenerator/Default              </param>
+     <param type="alg"    name="Module-5">   genie::RESHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::RESInteractionListGenerator/CC-Default         </param>
+  </param_set>
+
+  <param_set name="RES-NC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::RESKinematicsGenerator/RES                     </param>
+     <param type="alg"    name="Module-4">   genie::RESPrimaryLeptonGenerator/Default              </param>
+     <param type="alg"    name="Module-5">   genie::RESHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::RESInteractionListGenerator/NC-Default         </param>
+  </param_set>
+
+  <param_set name="RES-EM">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                   </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                        </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                             </param>
+     <param type="alg"    name="Module-3">   genie::RESKinematicsGenerator/RES                     </param>
+     <param type="alg"    name="Module-4">   genie::RESPrimaryLeptonGenerator/Default              </param>
+     <param type="alg"    name="Module-5">   genie::RESHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                     </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                      </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default                </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport   </param>
+     <param type="alg"    name="ILstGen">    genie::RESInteractionListGenerator/EM-Default         </param>
+  </param_set>
+
+  <param_set name="QEL-CC-CHARM">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   9                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::QELKinematicsGenerator/CC-Charm-Default       </param>
+     <param type="alg"    name="Module-4">   genie::QELPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::QELHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::QELInteractionListGenerator/CC-Charm-Default  </param>
+  </param_set>
+
+  <param_set name="DIS-CC-SINGLEK">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/NucOnShell                         </param>
+     <param type="alg"    name="Module-3">   genie::SKKinematicsGenerator/Default                 </param>
+     <param type="alg"    name="Module-4">   genie::SKPrimaryLeptonGenerator/Default              </param>
+     <param type="alg"    name="Module-5">   genie::SKHadronicSystemGenerator/Default             </param>
+     <param type="alg"    name="Module-6">   genie::PauliBlocker/Default                          </param>
+     <param type="alg"    name="Module-7">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-8">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::SKInteractionListGenerator/Default            </param>
+  </param_set>
+
+
+  <param_set name="DIS-CC-CHARM">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::DISKinematicsGenerator/CC-Charm-Default       </param>
+     <param type="alg"    name="Module-4">   genie::DISPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Charm              </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DISInteractionListGenerator/CC-Charm-Default  </param>
+  </param_set>
+
+  <param_set name="IMD">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   5                                          </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default        </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default             </param>
+     <param type="alg"    name="Module-2">   genie::NuEKinematicsGenerator/Default      </param>
+     <param type="alg"    name="Module-3">   genie::NuEPrimaryLeptonGenerator/Default   </param>
+     <param type="alg"    name="Module-4">   genie::NuETargetRemnantGenerator/Default   </param>
+     <param type="alg"    name="ILstGen">    genie::NuEInteractionListGenerator/IMD     </param>
+  </param_set>
+
+  <param_set name="IMD-ANH">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   5                                              </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default            </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                 </param>
+     <param type="alg"    name="Module-2">   genie::NuEKinematicsGenerator/Default          </param>
+     <param type="alg"    name="Module-3">   genie::NuEPrimaryLeptonGenerator/Default       </param>
+     <param type="alg"    name="Module-4">   genie::NuETargetRemnantGenerator/Default       </param>
+     <param type="alg"    name="ILstGen">    genie::NuEInteractionListGenerator/IMD-ANH     </param>
+  </param_set>
+
+  <param_set name="NUE-EL">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   5                                          </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default        </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default             </param>
+     <param type="alg"    name="Module-2">   genie::NuEKinematicsGenerator/Default      </param>
+     <param type="alg"    name="Module-3">   genie::NuEPrimaryLeptonGenerator/Default   </param>
+     <param type="alg"    name="Module-4">   genie::NuETargetRemnantGenerator/Default   </param>
+     <param type="alg"    name="ILstGen">    genie::NuEInteractionListGenerator/NUE-EL  </param>
+  </param_set>
+
+  <param_set name="AM-NUGAMMA">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   6                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                           </param>
+     <param type="alg"    name="Module-3">   genie::AMNuGammaGenerator/Default                   </param>
+     <param type="alg"    name="Module-4">   genie::HadronTransporter/Default                    </param>
+     <param type="alg"    name="Module-5">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::AMNuGammaInteractionListGenerator/Default    </param>
+  </param_set>
+
+  <param_set name="GLRES">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   3                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::GLRESGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::GLRESInteractionListGenerator/Default        </param>
+  </param_set>
+
+  <param_set name="MEC-CC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   5                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::MECGenerator/Default                         </param>
+     <param type="alg"    name="Module-3">   genie::HadronTransporter/Default                    </param>
+     <param type="alg"    name="Module-4">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::MECInteractionListGenerator/CC-Default       </param>
+  </param_set>
+
+  <param_set name="MEC-NC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   5                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::MECGenerator/Default                         </param>
+     <param type="alg"    name="Module-3">   genie::HadronTransporter/Default                    </param>
+     <param type="alg"    name="Module-4">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::MECInteractionListGenerator/NC-Default       </param>
+  </param_set>
+
+  <param_set name="MEC-EM">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   5                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::MECGenerator/Default                         </param>
+     <param type="alg"    name="Module-3">   genie::HadronTransporter/Default                    </param>
+     <param type="alg"    name="Module-4">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::MECInteractionListGenerator/EM-Default       </param>
+  </param_set>
+
+  <param_set name="DFR-CC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   9                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/NucOnShell                        </param>
+     <param type="alg"    name="Module-3">   genie::DFRKinematicsGenerator/Default               </param>
+     <param type="alg"    name="Module-4">   genie::DFRPrimaryLeptonGenerator/Default            </param>
+     <param type="alg"    name="Module-5">   genie::DFRHadronicSystemGenerator/Default           </param>
+     <param type="alg"    name="Module-6">   genie::UnstableParticleDecayer/BeforeHadronTransport</param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                    </param>
+     <param type="alg"    name="Module-8">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::DFRInteractionListGenerator/CC-Default       </param>
+  </param_set>
+
+  <param_set name="DFR-NC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   9                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/NucOnShell                        </param>
+     <param type="alg"    name="Module-3">   genie::DFRKinematicsGenerator/Default               </param>
+     <param type="alg"    name="Module-4">   genie::DFRPrimaryLeptonGenerator/Default            </param>
+     <param type="alg"    name="Module-5">   genie::DFRHadronicSystemGenerator/Default           </param>
+     <param type="alg"    name="Module-6">   genie::UnstableParticleDecayer/BeforeHadronTransport</param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                    </param>
+     <param type="alg"    name="Module-8">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::DFRInteractionListGenerator/NC-Default       </param>
+  </param_set>
+
+  <param_set name="CEvNS">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   3                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::CEvNSEventGenerator/Default                  </param>
+     <param type="alg"    name="ILstGen">    genie::CEvNSInteractionListGenerator/Default        </param>          
+  </param_set>
+
+  <param_set name="COH-NC-PION">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   6                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::COHKinematicsGenerator/Default               </param>
+     <param type="alg"    name="Module-3">   genie::COHPrimaryLeptonGenerator/Default            </param>
+     <param type="alg"    name="Module-4">   genie::COHHadronicSystemGenerator/Default           </param>
+     <param type="alg"    name="Module-5">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::COHInteractionListGenerator/NC-PION          </param>
+  </param_set>
+
+  <param_set name="COH-CC-PION">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   6                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                 </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                      </param>
+     <param type="alg"    name="Module-2">   genie::COHKinematicsGenerator/Default               </param>
+     <param type="alg"    name="Module-3">   genie::COHPrimaryLeptonGenerator/Default            </param>
+     <param type="alg"    name="Module-4">   genie::COHHadronicSystemGenerator/Default           </param>
+     <param type="alg"    name="Module-5">   genie::UnstableParticleDecayer/AfterHadronTransport </param>
+     <param type="alg"    name="ILstGen">    genie::COHInteractionListGenerator/CC-PION          </param>
+  </param_set>
+
+  <!--
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  Non-std threads
+  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  -->
+
+  <param_set name="RSPP-CC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::RESKinematicsGenerator/SPP                    </param>
+     <param type="alg"    name="Module-4">   genie::RESPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::RSPPResonanceSelector/Default                 </param>
+     <param type="alg"    name="Module-6">   genie::RSPPHadronicSystemGenerator/Default           </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::RSPPInteractionListGenerator/CC-Default       </param>
+     <param type="alg"    name="XSecModel">  genie::ReinSehgalSPPPXSec/Default                    </param>
+  </param_set>
+
+  <param_set name="RSPP-NC">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                   </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::RESKinematicsGenerator/SPP                    </param>
+     <param type="alg"    name="Module-4">   genie::RESPrimaryLeptonGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::RSPPResonanceSelector/Default                 </param>
+     <param type="alg"    name="Module-6">   genie::RSPPHadronicSystemGenerator/Default           </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::RSPPInteractionListGenerator/NC-Default       </param>
+     <param type="alg"    name="XSecModel">  genie::ReinSehgalSPPPXSec/Default                    </param>
+  </param_set>
+
+  <!-- Boosted Dark Matter Event Generation -->
+    <param_set name="DMEL">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   12                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::QELKinematicsGenerator/NC-Default             </param>
+     <param type="alg"    name="Module-4">   genie::DMELOutgoingDarkGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::QELHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::PauliBlocker/Default                          </param>
+     <param type="alg"    name="Module-7">   genie::UnstableParticleDecayer/BeforeHadronTransport </param>
+     <param type="alg"    name="Module-8">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-9">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-10">  genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-11">  genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DMELInteractionListGenerator/DM-Default        </param>
+  </param_set>
+
+  <param_set name="DMDIS">
+     <param type="string" name="VldContext"> </param>
+     <param type="int"    name="NModules">   10                                                    </param>
+     <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+     <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+     <param type="alg"    name="Module-2">   genie::FermiMover/Default                            </param>
+     <param type="alg"    name="Module-3">   genie::DMDISKinematicsGenerator/NC-Default             </param>
+     <param type="alg"    name="Module-4">   genie::DMDISOutgoingDarkGenerator/Default             </param>
+     <param type="alg"    name="Module-5">   genie::DISHadronicSystemGenerator/Default            </param>
+     <param type="alg"    name="Module-6">   genie::NucDeExcitationSim/Default                    </param>
+     <param type="alg"    name="Module-7">   genie::HadronTransporter/Default                     </param>
+     <param type="alg"    name="Module-8">   genie::NucBindEnergyAggregator/Default               </param>
+     <param type="alg"    name="Module-9">   genie::UnstableParticleDecayer/AfterHadronTransport  </param>
+     <param type="alg"    name="ILstGen">    genie::DMDISInteractionListGenerator/DM-Default        </param>
+  </param_set>
+
+  <!-- Very Low Energy Event Generation -->
+
+  <param_set name="VLE">
+      <param type="string" name="VldContext"> </param>
+      <param type="int"    name="NModules">   5                                                    </param>
+      <param type="alg"    name="Module-0">   genie::InitialStateAppender/Default                  </param>
+      <param type="alg"    name="Module-1">   genie::VertexGenerator/Default                       </param>
+      <param type="alg"    name="Module-2">   genie::IBDKinematicsGenerator/Default                </param>
+      <param type="alg"    name="Module-3">   genie::IBDPrimaryLeptonGenerator/Default             </param>
+      <param type="alg"    name="Module-4">   genie::IBDHadronicSystemGenerator/Default            </param>
+      <param type="alg"    name="ILstGen">    genie::IBDInteractionListGenerator/Default           </param>
+  </param_set>
+</alg_conf>
diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index 316b084af..a9801cae3 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -208,7 +208,10 @@ std::complex<double> genie::FreeNucleonTensor::Contract(
     // to multiply by 16.
     correction *= 16.;
 
-    result += correction;
+    // Neglect the correction for now (NuWro doesn't appear to use it, for instance)
+    // TODO: figure out whether there's an error in your implementation or in the
+    // paper you've based this on. When you do, restore the correction.
+    //result += correction;
   }
 
   return result;
diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index 49e232a2f..13ae596b1 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -14,10 +14,6 @@
 #include <limits>
 #include <sstream>
 
-// Needed for isnan() from C standard library
-// TODO: Replace this with std::isnan() when GENIE updates to C++11
-#include <math.h>
-
 // ROOT includes
 #include "TDatabasePDG.h"
 #include "TLorentzVector.h"
@@ -108,6 +104,12 @@ double genie::utils::ComputeFullQELPXSec(genie::Interaction* interaction,
       hitNucleonBindingMode);
   }
 
+  // A very high-momentum bound nucleon (which is far off the mass shell)
+  // can have a momentum greater than its total energy. This leads to numerical
+  // issues (NaNs) since the invariant mass of the nucleon becomes imaginary.
+  // In such cases, just return zero to avoid trouble.
+  if ( interaction->InitState().Tgt().HitNucP4().M() <= 0. ) return 0.;
+
   // Mass of the outgoing lepton
   double lepMass = interaction->FSPrimLepton()->Mass();
 
@@ -118,13 +120,6 @@ double genie::utils::ComputeFullQELPXSec(genie::Interaction* interaction,
   // Mandelstam s for the probe/hit nucleon system
   double s = std::pow( interaction->InitState().CMEnergy(), 2 );
 
-  // A very high-momentum bound nucleon (which is far off the mass shell)
-  // can have a momentum greater than its total energy. This leads to numerical
-  // issues when s goes negative (and thus sqrt(s) is imaginary). In such cases,
-  // Mandelstam s as calculated above will be NaN. This corresponds to being
-  // below threshold, so just return zero.
-  if ( isnan(s) ) return 0.;
-
   // Return a differential cross section of zero if we're below threshold (and
   // therefore need to sample a new event)
   if ( std::sqrt(s) < lepMass + mNf ) return 0.;

From 2aece86ccdaf8d4b9b62cb5f5efdb100e6c31a90 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 17 Oct 2019 19:03:14 -0500
Subject: [PATCH 14/36] Remove the code for setting a minimum scattering angle
 for EMQE events in QELEventGenerator. This sort of thing is now handled by an
 EM-specific Q^2 cut, which is enforced across multiple reaction modes.

---
 .../QuasiElastic/EventGen/QELEventGenerator.cxx   |  8 +++-----
 src/Physics/QuasiElastic/XSection/NewQELXSec.cxx  | 15 +++++----------
 src/Physics/QuasiElastic/XSection/NewQELXSec.h    |  4 +---
 src/Physics/QuasiElastic/XSection/QELUtils.cxx    |  8 +-------
 src/Physics/QuasiElastic/XSection/QELUtils.h      |  3 +--
 5 files changed, 11 insertions(+), 27 deletions(-)

diff --git a/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx b/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
index a0d2c55f5..864f24a62 100644
--- a/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
+++ b/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
@@ -200,7 +200,7 @@ void QELEventGenerator::ProcessEventRecord(GHepRecord * evrec) const
         // since we've already done that above
         LOG("QELEvent", pDEBUG) << "cth0 = " << costheta << ", phi0 = " << phi;
         double xsec = genie::utils::ComputeFullQELPXSec(interaction, fNuclModel,
-          fXSecModel, costheta, phi, fEb, fHitNucleonBindingMode, fMinAngleEM, false);
+          fXSecModel, costheta, phi, fEb, fHitNucleonBindingMode, false);
 
         // select/reject event
         this->AssertXSecLimits(interaction, xsec, xsec_max);
@@ -390,7 +390,7 @@ void QELEventGenerator::LoadConfig(void)
     // Minimum energy for which max xsec would be cached, forcing explicit
     // calculation for lower eneries
     GetParamDef( "Cache-MinEnergy", fEMin, 1.00 ) ;
-    
+
     // Maximum allowed fractional cross section deviation from maxim cross
     // section used in rejection method
     GetParamDef( "MaxXSec-DiffTolerance", fMaxXSecDiffTolerance, 999999. ) ;
@@ -400,8 +400,6 @@ void QELEventGenerator::LoadConfig(void)
     // an event weight?
     GetParamDef( "UniformOverPhaseSpace", fGenerateUniformly, false ) ;
 
-    GetParamDef( "SF-MinAngleEMscattering", fMinAngleEM, 0. ) ;
-
     // Decide how to handle the binding energy of the initial state struck
     // nucleon
     std::string binding_mode;
@@ -502,7 +500,7 @@ double QELEventGenerator::ComputeMaxXSec(const Interaction * in) const
                   // argument is false because we've already called
                   // BindHitNucleon() above
                   double xs = genie::utils::ComputeFullQELPXSec(interaction,
-                    fNuclModel, fXSecModel, costh, phi, dummy_Eb, kOnShell, fMinAngleEM, false);
+                    fNuclModel, fXSecModel, costh, phi, dummy_Eb, kOnShell, false);
 
                   if (xs > this_nuc_xsec_max){
                       phi_at_xsec_max = phi;
diff --git a/src/Physics/QuasiElastic/XSection/NewQELXSec.cxx b/src/Physics/QuasiElastic/XSection/NewQELXSec.cxx
index 47e3176b8..e579ddc53 100644
--- a/src/Physics/QuasiElastic/XSection/NewQELXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/NewQELXSec.cxx
@@ -79,7 +79,7 @@ double NewQELXSec::Integrate(const XSecAlgorithmI* model, const Interaction* in)
   }
 
   utils::gsl::FullQELdXSec* func = new utils::gsl::FullQELdXSec(model,
-    interaction, bind_mode, fMinAngleEM);
+    interaction, bind_mode);
   ROOT::Math::IntegrationMultiDim::Type ig_type =
     utils::gsl::IntegrationNDimTypeFromString( fGSLIntgType );
 
@@ -191,17 +191,12 @@ void NewQELXSec::LoadConfig(void)
   fVertexGenID = AlgId( vertexGenID );
 
   GetParamDef( "NumNucleonThrows", fNumNucleonThrows, 5000 );
-
-  // TODO: This is a parameter that may also be specified in the XML
-  // configuration for QELEventGenerator. Avoid duplication here to ensure
-  // consistency.
-  GetParamDef( "SF-MinAngleEMscattering", fMinAngleEM, 0. ) ;
 }
 
 genie::utils::gsl::FullQELdXSec::FullQELdXSec(const XSecAlgorithmI* xsec_model,
-  const Interaction* interaction, QELEvGen_BindingMode_t binding_mode, double min_angle_EM)
+  const Interaction* interaction, QELEvGen_BindingMode_t binding_mode)
   : fXSecModel( xsec_model ), fInteraction( new Interaction(*interaction) ),
-  fHitNucleonBindingMode( binding_mode ), fMinAngleEM( min_angle_EM )
+  fHitNucleonBindingMode( binding_mode )
 {
   fNuclModel = dynamic_cast<const NuclearModelI*>( fXSecModel->SubAlg("IntegralNuclearModel") );
   assert( fNuclModel );
@@ -224,7 +219,7 @@ const Interaction& genie::utils::gsl::FullQELdXSec::GetInteraction() const
 
 ROOT::Math::IBaseFunctionMultiDim* genie::utils::gsl::FullQELdXSec::Clone(void) const
 {
-  return new FullQELdXSec(fXSecModel, fInteraction, fHitNucleonBindingMode, fMinAngleEM);
+  return new FullQELdXSec(fXSecModel, fInteraction, fHitNucleonBindingMode);
 }
 
 unsigned int genie::utils::gsl::FullQELdXSec::NDim(void) const
@@ -251,7 +246,7 @@ double genie::utils::gsl::FullQELdXSec::DoEval(const double* xin) const
 
   // Compute the full differential cross section
   double xsec = genie::utils::ComputeFullQELPXSec(fInteraction, fNuclModel,
-    fXSecModel, cos_theta0, phi0, dummy_Eb, fHitNucleonBindingMode, fMinAngleEM, true);
+    fXSecModel, cos_theta0, phi0, dummy_Eb, fHitNucleonBindingMode, true);
 
   return xsec;
 }
diff --git a/src/Physics/QuasiElastic/XSection/NewQELXSec.h b/src/Physics/QuasiElastic/XSection/NewQELXSec.h
index 7c69a02e6..3b26e1172 100644
--- a/src/Physics/QuasiElastic/XSection/NewQELXSec.h
+++ b/src/Physics/QuasiElastic/XSection/NewQELXSec.h
@@ -39,7 +39,7 @@ namespace utils {
     {
      public:
        FullQELdXSec(const XSecAlgorithmI* xsec_model, const Interaction* interaction,
-         QELEvGen_BindingMode_t binding_mode, double min_angle_EM);
+         QELEvGen_BindingMode_t binding_mode);
        virtual ~FullQELdXSec();
 
        // ROOT::Math::IBaseFunctionMultiDim interface
@@ -55,7 +55,6 @@ namespace utils {
        const NuclearModelI* fNuclModel;
        Interaction* fInteraction;
        QELEvGen_BindingMode_t fHitNucleonBindingMode;
-       double fMinAngleEM;
     };
 
   } // gsl   namespace
@@ -90,7 +89,6 @@ class NewQELXSec : public XSecIntegratorI {
   unsigned int fGSLMaxEval;
   AlgId fVertexGenID;
   int fNumNucleonThrows;
-  double fMinAngleEM;
 };
 
 
diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index 13ae596b1..a3c689b61 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -94,8 +94,7 @@ double genie::utils::EnergyDeltaFunctionSolutionQEL(
 double genie::utils::ComputeFullQELPXSec(genie::Interaction* interaction,
   const genie::NuclearModelI* nucl_model, const genie::XSecAlgorithmI* xsec_model,
   double cos_theta_0, double phi_0, double& Eb,
-  genie::QELEvGen_BindingMode_t hitNucleonBindingMode, double min_angle_EM,
-  bool bind_nucleon)
+  genie::QELEvGen_BindingMode_t hitNucleonBindingMode, bool bind_nucleon)
 {
   // If requested, set the initial hit nucleon 4-momentum to be off-shell
   // according to the binding mode specified in the function call
@@ -173,11 +172,6 @@ double genie::utils::ComputeFullQELPXSec(genie::Interaction* interaction,
   lepton.Boost(beta);
   outNucleon.Boost(beta);
 
-  // Check if event is at a low angle - if so return 0 and stop wasting time
-  if (180 * lepton.Theta() / genie::constants::kPi < min_angle_EM && interaction->ProcInfo().IsEM()) {
-    return 0;
-  }
-
   TLorentzVector * nuP4 = interaction->InitState().GetProbeP4( genie::kRfLab );
   TLorentzVector qP4 = *nuP4 - lepton;
   delete nuP4;
diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.h b/src/Physics/QuasiElastic/XSection/QELUtils.h
index df737ff16..50d7aa66a 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.h
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.h
@@ -36,8 +36,7 @@ namespace genie {
     double ComputeFullQELPXSec(Interaction* interaction,
       const NuclearModelI* nucl_model, const XSecAlgorithmI* xsec_model,
       double cos_theta_0, double phi_0, double& Eb,
-      QELEvGen_BindingMode_t hitNucleonBindingMode, double min_angle_EM = 0.,
-      bool bind_nucleon = true);
+      QELEvGen_BindingMode_t hitNucleonBindingMode, bool bind_nucleon = true);
 
     double CosTheta0Max(const genie::Interaction& interaction);
 

From 7a570773a681d3c3fee47576803df21f3a35b467 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Fri, 18 Oct 2019 11:19:53 -0500
Subject: [PATCH 15/36] Switch to using a spectral function data file format
 that matches Noemi's

---
 .../pke12_tot_genie_format.data               | 4041 ++++-------------
 src/Physics/NuclearState/SpectralFunc.cxx     |  195 +-
 src/Physics/NuclearState/SpectralFunc.h       |    1 +
 3 files changed, 941 insertions(+), 3296 deletions(-)

diff --git a/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data b/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data
index dab69a2a7..b237e99df 100644
--- a/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data
+++ b/data/evgen/nucl/spectral_functions/pke12_tot_genie_format.data
@@ -1,3200 +1,841 @@
-0.10000E+02 2.5 0.000E+00
-0.10000E+02 7.5 0.000E+00
-0.10000E+02 12.5 0.000E+00
-0.10000E+02 17.5 0.405E-08
-0.10000E+02 22.5 0.254E-08
-0.10000E+02 27.5 0.320E-08
-0.10000E+02 32.5 0.484E-08
-0.10000E+02 37.5 0.625E-08
-0.10000E+02 42.5 0.546E-08
-0.10000E+02 47.5 0.343E-08
-0.10000E+02 52.5 0.217E-08
-0.10000E+02 57.5 0.137E-08
-0.10000E+02 62.5 0.928E-09
-0.10000E+02 67.5 0.678E-09
-0.10000E+02 72.5 0.499E-09
-0.10000E+02 77.5 0.395E-09
-0.10000E+02 82.5 0.313E-09
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-0.10000E+02 92.5 0.215E-09
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+  22.5   0.801E-16  27.5   0.178E-15  32.5   0.232E-15  37.5   0.283E-15
+  42.5   0.410E-15  47.5   0.625E-15  52.5   0.875E-15  57.5   0.115E-14
+  62.5   0.159E-14  67.5   0.231E-14  72.5   0.318E-14  77.5   0.398E-14
+  82.5   0.485E-14  87.5   0.591E-14  92.5   0.733E-14  97.5   0.909E-14
+ 102.5   0.110E-13 107.5   0.126E-13 112.5   0.142E-13 117.5   0.161E-13
+ 122.5   0.186E-13 127.5   0.214E-13 132.5   0.241E-13 137.5   0.273E-13
+ 142.5   0.308E-13 147.5   0.346E-13 152.5   0.389E-13 157.5   0.431E-13
+ 162.5   0.477E-13 167.5   0.524E-13 172.5   0.574E-13 177.5   0.625E-13
+ 182.5   0.682E-13 187.5   0.738E-13 192.5   0.790E-13 197.5   0.846E-13
+ 202.5   0.903E-13 207.5   0.954E-13 212.5   0.101E-12 217.5   0.106E-12
+ 222.5   0.112E-12 227.5   0.117E-12 232.5   0.122E-12 237.5   0.127E-12
+ 242.5   0.131E-12 247.5   0.136E-12 252.5   0.140E-12 257.5   0.144E-12
+ 262.5   0.148E-12 267.5   0.152E-12 272.5   0.155E-12 277.5   0.158E-12
+ 282.5   0.160E-12 287.5   0.162E-12 292.5   0.164E-12 297.5   0.165E-12
+ 302.5   0.167E-12 307.5   0.168E-12 312.5   0.169E-12 317.5   0.170E-12
+ 322.5   0.169E-12 327.5   0.168E-12 332.5   0.166E-12 337.5   0.165E-12
+ 342.5   0.163E-12 347.5   0.160E-12 352.5   0.158E-12 357.5   0.155E-12
+ 362.5   0.151E-12 367.5   0.147E-12 372.5   0.143E-12 377.5   0.137E-12
+ 382.5   0.133E-12 387.5   0.129E-12 392.5   0.125E-12 397.5   0.121E-12
+ 0.79000E+03
+   2.5   0.000E+00   7.5   0.000E+00  12.5   0.000E+00  17.5   0.000E+00
+  22.5   0.189E-16  27.5   0.454E-16  32.5   0.579E-16  37.5   0.608E-16
+  42.5   0.841E-16  47.5   0.151E-15  52.5   0.245E-15  57.5   0.378E-15
+  62.5   0.653E-15  67.5   0.110E-14  72.5   0.158E-14  77.5   0.202E-14
+  82.5   0.251E-14  87.5   0.316E-14  92.5   0.404E-14  97.5   0.520E-14
+ 102.5   0.642E-14 107.5   0.756E-14 112.5   0.875E-14 117.5   0.102E-13
+ 122.5   0.120E-13 127.5   0.141E-13 132.5   0.160E-13 137.5   0.179E-13
+ 142.5   0.199E-13 147.5   0.222E-13 152.5   0.248E-13 157.5   0.277E-13
+ 162.5   0.309E-13 167.5   0.343E-13 172.5   0.381E-13 177.5   0.422E-13
+ 182.5   0.465E-13 187.5   0.510E-13 192.5   0.549E-13 197.5   0.591E-13
+ 202.5   0.636E-13 207.5   0.676E-13 212.5   0.721E-13 217.5   0.767E-13
+ 222.5   0.812E-13 227.5   0.858E-13 232.5   0.898E-13 237.5   0.937E-13
+ 242.5   0.977E-13 247.5   0.102E-12 252.5   0.106E-12 257.5   0.110E-12
+ 262.5   0.114E-12 267.5   0.116E-12 272.5   0.120E-12 277.5   0.123E-12
+ 282.5   0.126E-12 287.5   0.128E-12 292.5   0.130E-12 297.5   0.132E-12
+ 302.5   0.134E-12 307.5   0.136E-12 312.5   0.137E-12 317.5   0.139E-12
+ 322.5   0.139E-12 327.5   0.140E-12 332.5   0.140E-12 337.5   0.140E-12
+ 342.5   0.139E-12 347.5   0.139E-12 352.5   0.138E-12 357.5   0.137E-12
+ 362.5   0.135E-12 367.5   0.132E-12 372.5   0.129E-12 377.5   0.126E-12
+ 382.5   0.122E-12 387.5   0.119E-12 392.5   0.116E-12 397.5   0.114E-12
diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index eeae6577d..1833d1f4f 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -23,6 +23,7 @@
 */
 //____________________________________________________________________________
 
+#include <fstream>
 #include <sstream>
 #include <string>
 
@@ -41,24 +42,8 @@
 #include "Framework/ParticleData/PDGCodes.h"
 #include "Framework/Numerical/RandomGen.h"
 
-// Create a functor class in this anonymous namespace for now. We will use it
-// to facilitate numerical integration of TGraph2D objects in genie::SpectralFunc.
-// TODO: when GENIE moves to C++11, replace this nonsense with a lambda expression.
 namespace {
 
-  // Store a pointer to the TGraph2D to be integrated, but don't take ownership
-  class FunctorThatShouldBeALambda {
-    public:
-      FunctorThatShouldBeALambda(TGraph2D* graph) : fGraph( graph ) {}
-
-      double operator()(double* x, double*) {
-        return fGraph->Interpolate( x[0], x[1] );
-      }
-
-    private:
-      TGraph2D* fGraph;
-  };
-
   // Replace this with std::to_string when we switch to C++11
   std::string replace_with_std_to_string(int an_integer) {
     std::ostringstream oss;
@@ -105,13 +90,13 @@ bool SpectralFunc::GenerateNucleon(const Target& target) const
     return false;
   }
 
-  double kmin    = sf->GetXaxis()->GetBinLowEdge( 1 ); // momentum range
-  double kmax    = sf->GetXaxis()->GetBinLowEdge( fNumXBins + 1 );
-  double wmin    = sf->GetYaxis()->GetBinLowEdge( 1 ); // removal energy range
-  double wmax    = sf->GetYaxis()->GetBinLowEdge( fNumYBins + 1 );
+  double kmin    = sf->GetXaxis()->GetXmin(); // momentum range
+  double kmax    = sf->GetXaxis()->GetXmax();
+  double wmin    = sf->GetYaxis()->GetXmin(); // removal energy range
+  double wmax    = sf->GetYaxis()->GetXmax();
 
-  LOG("SpectralFunc", pINFO) << "Momentum range = ["   << kmin << ", " << kmax << "]";
-  LOG("SpectralFunc", pINFO) << "Rmv energy range = [" << wmin << ", " << wmax << "]";
+  LOG("SpectralFunc", pDEBUG) << "Momentum range = ["   << kmin << ", " << kmax << "]";
+  LOG("SpectralFunc", pDEBUG) << "Rmv energy range = [" << wmin << ", " << wmax << "]";
 
   // Temporarily replace ROOT's gRandom RNG with GENIE's so that our call to
   // TH2::GetRandom2() will use GENIE's random numbers
@@ -156,17 +141,21 @@ double SpectralFunc::Prob(double p, double w, const Target & target) const
   if ( !sf ) return 0.;
 
   // TODO: check whether we should return the probability mass or density here.
-  // The previous implementation used the density. For now, we do that too.
+  // The previous implementation used the density. For now, we return the mass.
   int bin_num = sf->FindBin( p, w );
   double prob_mass = sf->GetBinContent( bin_num );
 
-  int bx, by, bz;
-  sf->GetBinXYZ( bin_num, bx, by, bz );
+  return prob_mass;
 
-  double prob_density = prob_mass / sf->GetXaxis()->GetBinWidth( bx )
-    / sf->GetYaxis()->GetBinWidth( by );
+  //int bx, by, bz;
+  //sf->GetBinXYZ( bin_num, bx, by, bz );
 
-  return prob_density;
+  //double prob_density = prob_mass / sf->GetXaxis()->GetBinWidth( bx )
+  //  / sf->GetYaxis()->GetBinWidth( by )
+  //  / std::pow(sf->GetXaxis()->GetBinLowEdge( bx ), 2)
+  //  / (4. * kPi);
+
+  //return prob_density;
 }
 //____________________________________________________________________________
 void SpectralFunc::Configure(const Registry & config)
@@ -200,32 +189,6 @@ void SpectralFunc::LoadConfig(void)
   }
 
   fDataPath = data_path;
-
-  // Get the number of bins to use for each axis of the spectral function
-  // histogram
-  this->GetParamDef( "NumMomentumBins", fNumXBins, 1000 );
-  this->GetParamDef( "NumRemovalEnergyBins", fNumYBins, 1000 );
-
-}
-//____________________________________________________________________________
-TGraph2D* SpectralFunc::Convert2Graph(TNtupleD& sfdata) const
-{
-  int np = sfdata.GetEntries();
-  TGraph2D * sfgraph = new TGraph2D( np );
-
-  sfdata.Draw("k:e:prob","","GOFF");
-  assert( np == sfdata.GetSelectedRows() );
-  double* k = sfdata.GetV1();
-  double* e = sfdata.GetV2();
-  double* p = sfdata.GetV3();
-
-  for (int i = 0; i < np; ++i ) {
-    double ki = k[i] * ( units::MeV / units::GeV ); // momentum
-    double ei = e[i] * ( units::MeV / units::GeV ); // removal energy
-    double pi = p[i] * TMath::Power(ki,2); // probabillity
-    sfgraph->SetPoint(i, ki, ei, pi);
-  }
-  return sfgraph;
 }
 //____________________________________________________________________________
 TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
@@ -251,64 +214,104 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
   // Prepend the data path to the file name
   data_filename = fDataPath + data_filename;
 
-  TNtupleD temp_sf_data( ("sfdata_" + target_pdg_string).c_str(), "",
-    "k:e:prob" );
+  TH2D* sf_hist = this->LoadSFDataFile(data_filename);
 
-  temp_sf_data.ReadFile( data_filename.c_str() );
+  LOG("SpectralFunc", pNOTICE) << "Loaded spectral function data"
+    " for target with PDG code " << target_pdg << " from the file "
+    << data_filename;
 
-  LOG("SpectralFunc", pDEBUG) << "Loaded " << temp_sf_data.GetEntries()
-    << " spectral function data points for pdg code " << target_pdg;
+  sf_hist->SetName( ("sf_" + target_pdg_string).c_str() );
 
-  TGraph2D* temp_sf_graph = this->Convert2Graph( temp_sf_data );
-  temp_sf_graph->SetName( ("sf_" + target_pdg_string).c_str() );
+  // Set the directory to NULL so that this histogram is never auto-deleted
+  // (the genie::SpectralFunc object will take ownership)
+  sf_hist->SetDirectory( NULL );
 
-  // Create a TF2 that we can use to easily integrate the TGraph2D over
-  // histogram bins
-  double x_min = temp_sf_graph->GetXmin();
-  double x_max = temp_sf_graph->GetXmax();
+  // Store the new spectral function histogram for easy retrieval later
+  fSpectralFunctionMap[ target_pdg ] = sf_hist;
 
-  double y_min = temp_sf_graph->GetYmin();
-  double y_max = temp_sf_graph->GetYmax();
+  return sf_hist;
+}
+//____________________________________________________________________________
+TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
+{
+  int num_E_bins, num_p_bins;
+  std::ifstream in_file( full_file_name );
+
+  // TODO: add I/O error handling
+
+  // First pass: get the number of bins on each axis
+  // and the set of bin edges
+  // TODO: consider changing the format so that this can
+  // be conveniently done in a single read-through of the
+  // input file
+  in_file >> num_E_bins >> num_p_bins;
+  double p, E, prob_density;
+  std::vector<double> ps, Es;
+  for ( int ip = 0; ip < num_p_bins; ++ip ) {
+
+    in_file >> p;
+    ps.push_back( p * genie::units::MeV );
+
+    for ( int ie = 0; ie < num_E_bins; ++ie ) {
+      in_file >> E >> prob_density;
+      if ( ip == 0 ) Es.push_back( E * genie::units::MeV );
+    }
+  }
 
-  FunctorThatShouldBeALambda functor( temp_sf_graph );
-  TF2 temp_sf_func("temp_sf_func", functor, x_min, x_max, y_min, y_max, 0);
+  // Assume that the last bin along each axis has the same width
+  // as the first bin (Noemi's SF tables do not give the last bin's
+  // high edge explicitly). Defining a TH2 with variable-size bins
+  // requires these high edge values.
+  // TODO: revisit this as needed
+  double p_width = ps.at(1) - ps.front();
+  ps.push_back( ps.back() + p_width );
 
-  // Create a 2D histogram to represent the spectral function
-  TH2D* sf_hist = new TH2D( ("sf_hist" + target_pdg_string).c_str(),
-    ("spectral function for pdg code " + target_pdg_string
-    + "; nucleon momentum (GeV); removal energy (GeV); probability").c_str(),
-    fNumXBins, x_min, x_max, fNumYBins, y_min, y_max );
+  double E_width = Es.at(1) - Es.front();
+  Es.push_back( Es.back() + E_width );
 
-  // Set the directory to NULL so that this histogram is never auto-deleted
-  // (the genie::SpectralFunc object will take ownership)
-  sf_hist->SetDirectory( NULL );
+  in_file.close();
 
-  for ( int bx = 1; bx <= fNumXBins; ++bx ) {
-    for ( int by = 1; by <= fNumYBins; ++by ) {
+  // We've built the grid, now make a histogram using it
+  TH2D* sf_hist = new TH2D("temp_sf_hist",
+    "Spectral Function; nucleon momentum (GeV); removal energy (GeV)",
+    num_p_bins, &(ps.front()), num_E_bins, &(Es.front()));
 
-      // Get the current bin's boundaries
-      double bin_x_min = sf_hist->GetXaxis()->GetBinLowEdge( bx );
-      double bin_x_max = sf_hist->GetXaxis()->GetBinLowEdge( bx + 1 );
+  // Do a second pass and set the contents of each bin
+  in_file.open( full_file_name );
+  in_file >> num_E_bins >> num_p_bins;
+  for ( int ip = 0; ip < num_p_bins; ++ip ) {
 
-      double bin_y_min = sf_hist->GetYaxis()->GetBinLowEdge( by );
-      double bin_y_max = sf_hist->GetYaxis()->GetBinLowEdge( by + 1 );
+    in_file >> p;
 
-      // Probability mass for the current bin
-      double pmf = temp_sf_func.Integral( bin_x_min, bin_x_max, bin_y_min,
-        bin_y_max );
+    // Convert from MeV to GeV
+    p *= genie::units::MeV;
 
-      // Get the global bin number for the current bin
-      int bin_num = sf_hist->GetBin( bx, by );
+    for ( int ie = 0; ie < num_E_bins; ++ie ) {
 
-      // Set its contents to match the probability mass function
-      sf_hist->SetBinContent( bin_num, pmf );
-    }
-  }
+      in_file >> E >> prob_density;
 
-  delete temp_sf_graph;
+      // Convert from MeV to GeV
+      E *= genie::units::MeV;
 
-  // Store the new spectral function histogram for easy retrieval later
-  fSpectralFunctionMap[ target_pdg ] = sf_hist;
+      // Convert bin contents from probability density to probability
+      // mass for easier sampling
+      TAxis* p_axis = sf_hist->GetXaxis();
+      int p_idx = p_axis->FindBin( p );
+      double p_bin_width = p_axis->GetBinWidth( p_idx );
+
+      TAxis* E_axis = sf_hist->GetYaxis();
+      int E_idx = E_axis->FindBin( E );
+      double E_bin_width = E_axis->GetBinWidth( E_idx );
+
+      double prob_mass = prob_density * std::pow(p, 2) * 4. * kPi
+        * p_bin_width * E_bin_width;
+
+      sf_hist->SetBinContent( sf_hist->FindBin(p, E), prob_mass );
+      LOG("SpectralFunc", pDEBUG) << "p = " << p << ", E = " << E << ", dens = " << prob_density
+        << ", mass = " << prob_mass << ", p_bin_width = " << p_bin_width << ", E_bin_width = "
+        << E_bin_width;
+    }
+  }
 
   return sf_hist;
 }
diff --git a/src/Physics/NuclearState/SpectralFunc.h b/src/Physics/NuclearState/SpectralFunc.h
index 6c4cc6a6d..9dc83a881 100644
--- a/src/Physics/NuclearState/SpectralFunc.h
+++ b/src/Physics/NuclearState/SpectralFunc.h
@@ -61,6 +61,7 @@ class SpectralFunc : public NuclearModelI {
   void       LoadConfig             (void);
   TGraph2D*  Convert2Graph          (TNtupleD& data) const;
   TH2D*      SelectSpectralFunction (const Target& target) const;
+  TH2D* LoadSFDataFile(const std::string& full_file_name) const;
 
   /// The path to the folder containing the spectral function data files
   std::string fDataPath;

From 38fb9e47cf0e7516357006c8c92dad1aa362a790 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Fri, 18 Oct 2019 21:22:35 -0500
Subject: [PATCH 16/36] Make the SpectralFunc nuclear model compatible with the
 maximum differential cross section search performed in
 QELEventGenerator::ComputeMaxXSec(). Also fix a couple of minor issues in the
 CBFSpectFuncQELPXSec class.

---
 src/Physics/NuclearState/SpectralFunc.cxx     | 19 ++++++++++++++--
 .../EventGen/QELEventGenerator.cxx            |  4 ++--
 .../XSection/CBFSpectFuncQELPXSec.cxx         | 22 +++++++++----------
 3 files changed, 29 insertions(+), 16 deletions(-)

diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index 1833d1f4f..dd15f764a 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -142,8 +142,23 @@ double SpectralFunc::Prob(double p, double w, const Target & target) const
 
   // TODO: check whether we should return the probability mass or density here.
   // The previous implementation used the density. For now, we return the mass.
-  int bin_num = sf->FindBin( p, w );
-  double prob_mass = sf->GetBinContent( bin_num );
+  double prob_mass = 0.;
+  if ( w >= 0. ) {
+    // In the normal case, find the bin corresponding to (p, w) and return the
+    // probability based on that
+    int bin_num = sf->FindBin( p, w );
+    prob_mass = sf->GetBinContent( bin_num );
+  }
+  else {
+    // For w < 0 (e.g., w = -1 used by QELEventGenerator), ignore w and find
+    // the integrated probability of sampling from the appropriate p bin
+    TH1D* temp_p_hist = sf->ProjectionX("temp_p_proj_x", 1,
+      sf->GetXaxis()->GetNbins());
+
+    int p_bin_num = temp_p_hist->FindBin( p );
+    prob_mass = temp_p_hist->GetBinContent( p_bin_num );
+    delete temp_p_hist;
+  }
 
   return prob_mass;
 
diff --git a/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx b/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
index 864f24a62..0e60dc270 100644
--- a/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
+++ b/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
@@ -449,7 +449,7 @@ double QELEventGenerator::ComputeMaxXSec(const Interaction * in) const
       // BindHitNucleon()
       genie::utils::BindHitNucleon(*interaction, *fNuclModel, dummy_Eb, kOnShell);
 
-      // TODO: document this, won't work for spectral functions
+      // TODO: document this
       double dummy_w = -1.;
       double prob = fNuclModel->Prob(pNi_next, dummy_w, tgt,
         tgt.HitNucPosition());
@@ -491,7 +491,7 @@ double QELEventGenerator::ComputeMaxXSec(const Interaction * in) const
           double costh_increment = (costh_range_max-costh_range_min) / N_theta;
           double phi_increment   = (phi_range_max-phi_range_min) / N_phi;
           // Now scan through centre-of-mass angles coarsely
-          for (int itheta = 0; itheta < N_theta; itheta++){
+          for (int itheta = 0; itheta <= N_theta; itheta++) {
               double costh = costh_range_min + itheta * costh_increment;
               for (int iphi = 0; iphi < N_phi; iphi++) { // Scan around phi
                   double phi = phi_range_min + iphi * phi_increment;
diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
index d6cde0eb0..80ede8f26 100644
--- a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
@@ -98,14 +98,14 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
     double kF = fPauliBlocker->GetFermiMomentum(target,
       interaction->RecoilNucleonPdg(), target.HitNucPosition());
     if ( p4Nf.P() < kF ) return 0.;
+  }
 
-    // Scale cross section by the number of active nucleons
-    int hit_nuc_pdg = target.HitNucPdg();
-    // Number of active nucleons in the target
-    int num_active = pdg::IsProton(hit_nuc_pdg) ? target.Z() : target.N();
+  // Scale cross section by the number of active nucleons
+  int hit_nuc_pdg = target.HitNucPdg();
+  // Number of active nucleons in the target
+  int num_active = pdg::IsProton(hit_nuc_pdg) ? target.Z() : target.N();
 
-    xsec *= num_active;
-  }
+  xsec *= num_active;
 
   // Compute form factors using Q2tilde (the effective Q2 value after
   // binding energy corrections)
@@ -148,12 +148,10 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
   // Apply the coupling factor to the differential cross section
   xsec *= coupling_factor;
 
-  // The corrected energy transfer qTilde0 needs to be nonnegative
-  // to enforce energy conservation
-  if ( qTildeP4.E() < 0. ) {
-    LOG("CBFSpectFunc", pDEBUG) << "q0Tilde < 0," << " returning xsec = 0";
-    return 0.;
-  }
+  // For a bound hit nucleon, the corrected energy transfer qTilde0 needs to be
+  // positive to enforce energy conservation
+  if ( qTildeP4.E() <= 0. && interaction->InitState().Tgt().IsNucleus()
+    && !interaction->TestBit(kIAssumeFreeNucleon) ) return 0.;
 
   // Set Q2 to Q2tilde while computing form factors
   interaction->KinePtr()->SetQ2( Q2tilde );

From 2a420f99bfa6cf219c2eb41bf9ee8fb8e6de4387 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Fri, 18 Oct 2019 23:27:36 -0500
Subject: [PATCH 17/36] Switch to using a global Fermi gas as the default
 nuclear model in the N19_00a_00_000 tune. This will cause constant kF values
 (from the Fermi momentum table) to be used by PauliBlocker, in agreement with
 Noemi's Fortran calculation.

---
 config/N19_00a/ModelConfiguration.xml | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/config/N19_00a/ModelConfiguration.xml b/config/N19_00a/ModelConfiguration.xml
index f1f9cb965..9333b485d 100644
--- a/config/N19_00a/ModelConfiguration.xml
+++ b/config/N19_00a/ModelConfiguration.xml
@@ -13,8 +13,15 @@
   Currently the same nuclear model is forced for all isotopes.
  -->
 
-  <!-- Use a local Fermi gas for nuclei for which GENIE does not have a tabulated spectral function -->
+  <!--
+  Use a local Fermi gas for nuclei for which GENIE does not have a tabulated spectral function.
+  This default nuclear model will also be used for Pauli blocking kF lookups
   <param type="alg"  name="NuclearModel"> genie::LocalFGM/Default </param>
+  -->
+
+  <!-- Use a global Fermi gas for nuclei for which GENIE does not have a tabulated spectral function.
+  This default nuclear model will also be used for Pauli blocking kF lookups -->
+  <param type="alg"  name="NuclearModel"> genie::FGMBodekRitchie/Default </param>
 
   <!-- For 12C and 56Fe, use the spectral function -->
   <param type="alg" name="NuclearModel@Pdg=1000060120"> genie::SpectralFunc/Default </param>

From 35a6d25f315365d560124d6ab3bcb92f27ecc76f Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Fri, 8 Nov 2019 17:34:18 -0600
Subject: [PATCH 18/36] Swap order of a few lines in QELUtils.cxx to avoid
 unnecessary warning messages

---
 src/Physics/QuasiElastic/XSection/QELUtils.cxx | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index a3c689b61..6ee169de1 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -177,15 +177,15 @@ double genie::utils::ComputeFullQELPXSec(genie::Interaction* interaction,
   delete nuP4;
   double Q2 = -1 * qP4.Mag2();
 
-  interaction->KinePtr()->SetFSLeptonP4( lepton );
-  interaction->KinePtr()->SetHadSystP4( outNucleon );
-  interaction->KinePtr()->SetQ2( Q2 );
-
   // Check the Q2 range. If we're outside of it, don't bother
   // with the rest of the calculation.
   Range1D_t Q2lim = interaction->PhaseSpace().Q2Lim();
   if (Q2 < Q2lim.min || Q2 > Q2lim.max) return 0.;
 
+  interaction->KinePtr()->SetFSLeptonP4( lepton );
+  interaction->KinePtr()->SetHadSystP4( outNucleon );
+  interaction->KinePtr()->SetQ2( Q2 );
+
   // Compute the QE cross section for the current kinematics
   double xsec = xsec_model->XSec(interaction, genie::kPSQELEvGen);
 

From 5aa41b52744565baf54f57c6c5e1d95bede148b1 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Mon, 2 Dec 2019 17:18:08 -0600
Subject: [PATCH 19/36] Switch to interpreting the tabulated (p, E) values for
 the spectral function data tables as bin centers rather than bin edges.
 Update the input file format so that it requires only a single pass to parse.
 Remove call to std::map::at() from SpectralFunc.cxx, since this is a C++11
 feature.

---
 config/SpectralFunc.xml                   |  2 +-
 src/Physics/NuclearState/SpectralFunc.cxx | 69 ++++++++---------------
 2 files changed, 24 insertions(+), 47 deletions(-)

diff --git a/config/SpectralFunc.xml b/config/SpectralFunc.xml
index 5648ea16b..01a1017db 100644
--- a/config/SpectralFunc.xml
+++ b/config/SpectralFunc.xml
@@ -19,7 +19,7 @@ Name               Type    Optional   Comment                      Default
     <param type="string" name="DataPath"> data/evgen/nucl/spectral_functions </param>
 
     <!-- <param type="string" name="SpectFuncTable@Pdg=1000060120"> benhar-sf-12c.data </param> -->
-    <param type="string" name="SpectFuncTable@Pdg=1000060120"> pke12_tot_genie_format.data </param>
+    <param type="string" name="SpectFuncTable@Pdg=1000060120"> pke12_tot.data </param>
     <param type="string" name="SpectFuncTable@Pdg=1000260560"> benhar-sf-56fe.data </param>
 
   </param_set>
diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index dd15f764a..a92f48bfb 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -11,15 +11,6 @@
          Fermi National Accelerator Laboratory
 
  For the class documentation see the corresponding header file.
-
- Important revisions after version 2.0.0 :
- @ May 01, 2012 - CA
-   Pick spectral function data from $GENIE/data/evgen/nucl/spectral_functions
-
- @ April 29, 2019 - SG
-   Full rewrite to use finely-binned histograms (tightly-peaked distributions led
-   to very slow rejection sampling), XML-based configuration of spectral function
-   data files with lazy initialization
 */
 //____________________________________________________________________________
 
@@ -44,7 +35,7 @@
 
 namespace {
 
-  // Replace this with std::to_string when we switch to C++11
+  // TODO: Replace this with std::to_string when we switch to C++11
   std::string replace_with_std_to_string(int an_integer) {
     std::ostringstream oss;
     oss << an_integer;
@@ -210,9 +201,8 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
 {
   // First check whether we've already built the requested spectral function
   int target_pdg = t.Pdg();
-  if ( fSpectralFunctionMap.count(target_pdg) ) {
-    return fSpectralFunctionMap.at( target_pdg );
-  }
+  std::map<int, TH2D*>::iterator my_iter = fSpectralFunctionMap.find( target_pdg );
+  if ( my_iter != fSpectralFunctionMap.end() ) return my_iter->second;
 
   // If not, attempt to build it
   std::string target_pdg_string = replace_with_std_to_string( target_pdg );
@@ -250,50 +240,35 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
 TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
 {
   int num_E_bins, num_p_bins;
+  double p_min, p_max, E_min, E_max;
+
   std::ifstream in_file( full_file_name );
 
   // TODO: add I/O error handling
 
-  // First pass: get the number of bins on each axis
-  // and the set of bin edges
-  // TODO: consider changing the format so that this can
-  // be conveniently done in a single read-through of the
-  // input file
+  // Read the histogram bin boundary information from the
+  // spectral function data file header. Note that the current
+  // format requires equally-spaced bins.
   in_file >> num_E_bins >> num_p_bins;
-  double p, E, prob_density;
-  std::vector<double> ps, Es;
-  for ( int ip = 0; ip < num_p_bins; ++ip ) {
-
-    in_file >> p;
-    ps.push_back( p * genie::units::MeV );
+  in_file >> E_min >> p_min;
+  in_file >> E_max >> p_max;
 
-    for ( int ie = 0; ie < num_E_bins; ++ie ) {
-      in_file >> E >> prob_density;
-      if ( ip == 0 ) Es.push_back( E * genie::units::MeV );
-    }
-  }
+  // The input files use MeV while GENIE uses GeV, so make the
+  // change to GENIE units now.
+  // change now
+  E_min *= genie::units::MeV;
+  E_max *= genie::units::MeV;
 
-  // Assume that the last bin along each axis has the same width
-  // as the first bin (Noemi's SF tables do not give the last bin's
-  // high edge explicitly). Defining a TH2 with variable-size bins
-  // requires these high edge values.
-  // TODO: revisit this as needed
-  double p_width = ps.at(1) - ps.front();
-  ps.push_back( ps.back() + p_width );
+  p_min *= genie::units::MeV;
+  p_max *= genie::units::MeV;
 
-  double E_width = Es.at(1) - Es.front();
-  Es.push_back( Es.back() + E_width );
-
-  in_file.close();
-
-  // We've built the grid, now make a histogram using it
+  // Build an empty histogram with the given bin boundaries
   TH2D* sf_hist = new TH2D("temp_sf_hist",
     "Spectral Function; nucleon momentum (GeV); removal energy (GeV)",
-    num_p_bins, &(ps.front()), num_E_bins, &(Es.front()));
+    num_p_bins, p_min, p_max, num_E_bins, E_min, E_max);
 
-  // Do a second pass and set the contents of each bin
-  in_file.open( full_file_name );
-  in_file >> num_E_bins >> num_p_bins;
+  // Now set the contents of each bin using the body of the input data file.
+  // Note that the tabulated p and E values represent the bin centers.
   for ( int ip = 0; ip < num_p_bins; ++ip ) {
 
     in_file >> p;
@@ -318,6 +293,8 @@ TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
       int E_idx = E_axis->FindBin( E );
       double E_bin_width = E_axis->GetBinWidth( E_idx );
 
+      // This expression assumes that the p^2 * prob_density can
+      // be treated as approximately constant over the bin of interest
       double prob_mass = prob_density * std::pow(p, 2) * 4. * kPi
         * p_bin_width * E_bin_width;
 

From 793b60ccc4c8672e88fb5ac358109053d17ef6e1 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 4 Dec 2019 00:29:31 -0600
Subject: [PATCH 20/36] Modify the QELUtils.cxx method BindHitNucleon() to
 apply the correct definition of the removal energy when using the
 SpectralFunc nuclear model. Also rename the CBFSpectFuncQELPXSec model to
 UnifiedQELPXSec.

---
 config/N19_00a/ModelConfiguration.xml         |  6 ++--
 src/Physics/QuasiElastic/XSection/LinkDef.h   |  2 +-
 .../QuasiElastic/XSection/QELUtils.cxx        | 21 +++++++++----
 ...ctFuncQELPXSec.cxx => UnifiedQELPXSec.cxx} | 30 +++++++++----------
 ...FSpectFuncQELPXSec.h => UnifiedQELPXSec.h} | 10 +++----
 5 files changed, 39 insertions(+), 30 deletions(-)
 rename src/Physics/QuasiElastic/XSection/{CBFSpectFuncQELPXSec.cxx => UnifiedQELPXSec.cxx} (91%)
 rename src/Physics/QuasiElastic/XSection/{CBFSpectFuncQELPXSec.h => UnifiedQELPXSec.h} (91%)

diff --git a/config/N19_00a/ModelConfiguration.xml b/config/N19_00a/ModelConfiguration.xml
index 9333b485d..83efe8b2b 100644
--- a/config/N19_00a/ModelConfiguration.xml
+++ b/config/N19_00a/ModelConfiguration.xml
@@ -50,9 +50,9 @@
 
 
   <!-- New QE model based on SF treatment. For CCQE, it's essentially equivalent to the Llewellyn-Smith model  -->
-  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-CC"> genie::CBFSpectFuncQELPXSec/Dipole </param>
-  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-NC"> genie::CBFSpectFuncQELPXSec/Dipole </param>
-  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-EM"> genie::CBFSpectFuncQELPXSec/Dipole </param>
+  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-CC"> genie::UnifiedQELPXSec/Dipole </param>
+  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-NC"> genie::UnifiedQELPXSec/Dipole </param>
+  <param type="alg" name="XSecModel@genie::EventGenerator/QEL-EM"> genie::UnifiedQELPXSec/Dipole </param>
 
   <!--
     <param type="alg" name="XSecModel@genie::EventGenerator/MEC-CC"> genie::EmpiricalMECPXSec2015/Default </param>
diff --git a/src/Physics/QuasiElastic/XSection/LinkDef.h b/src/Physics/QuasiElastic/XSection/LinkDef.h
index 667ed158b..b4bc7202d 100644
--- a/src/Physics/QuasiElastic/XSection/LinkDef.h
+++ b/src/Physics/QuasiElastic/XSection/LinkDef.h
@@ -43,6 +43,6 @@
 #pragma link C++ class genie::Rank2LorentzTensorI;
 #pragma link C++ class genie::LeptonTensor;
 #pragma link C++ class genie::FreeNucleonTensor;
-#pragma link C++ class genie::CBFSpectFuncQELPXSec;
+#pragma link C++ class genie::UnifiedQELPXSec;
 
 #endif
diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index 6ee169de1..4413500fe 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -291,12 +291,21 @@ void genie::utils::BindHitNucleon(genie::Interaction& interaction,
     // model, then it implies a certain value for the final
     // nucleus mass
     if ( hitNucleonBindingMode == genie::kUseNuclearModel ) {
-      Eb = nucl_model.RemovalEnergy();
-      // This equation is the definition that we assume
-      // here for the "removal energy" (Eb) returned by the
-      // nuclear model. It matches GENIE's convention for
-      // the Bodek/Ritchie Fermi gas model.
-      Mf = Mi + Eb - mNi;
+      if ( nucl_model.Id().Name() != "genie::SpectralFunc" ) {
+        Eb = nucl_model.RemovalEnergy();
+        // For all nuclear models except SpectralFunc, this equation is the
+        // definition that we assume for the "removal energy" (Eb). It matches
+        // GENIE's convention for the Bodek/Ritchie Fermi gas model.
+        Mf = Mi + Eb - mNi;
+      }
+      else {
+        // The SpectralFunc nuclear model returns a removal energy
+        // which includes the kinetic energy of the final-state nucleus.
+        // We account for this difference here.
+        double E = nucl_model.RemovalEnergy();
+        Mf = std::sqrt( std::max(0., std::pow(Mi + E - mNi, 2) - p3Ni.Mag2()) );
+        Eb = Mf + mNi - Mi;
+      }
     }
     // We can also assume that the final nucleus is in its
     // ground state. In this case, we can just look up its
diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
similarity index 91%
rename from src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
rename to src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
index 80ede8f26..67591791f 100644
--- a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
@@ -18,7 +18,7 @@
 #include "Math/IFunction.h"
 #include "Math/Integrator.h"
 
-#include "Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h"
+#include "Physics/QuasiElastic/XSection/UnifiedQELPXSec.h"
 #include "Physics/XSectionIntegration/XSecIntegratorI.h"
 #include "Physics/QuasiElastic/XSection/QELFormFactors.h"
 #include "Physics/QuasiElastic/XSection/QELFormFactorsModelI.h"
@@ -41,24 +41,24 @@ using namespace genie::controls;
 using namespace genie::utils;
 
 //____________________________________________________________________________
-CBFSpectFuncQELPXSec::CBFSpectFuncQELPXSec() :
-XSecAlgorithmI("genie::CBFSpectFuncQELPXSec")
+UnifiedQELPXSec::UnifiedQELPXSec() :
+XSecAlgorithmI("genie::UnifiedQELPXSec")
 {
 
 }
 //____________________________________________________________________________
-CBFSpectFuncQELPXSec::CBFSpectFuncQELPXSec(string config) :
-XSecAlgorithmI("genie::CBFSpectFuncQELPXSec", config)
+UnifiedQELPXSec::UnifiedQELPXSec(string config) :
+XSecAlgorithmI("genie::UnifiedQELPXSec", config)
 {
 
 }
 //____________________________________________________________________________
-CBFSpectFuncQELPXSec::~CBFSpectFuncQELPXSec()
+UnifiedQELPXSec::~UnifiedQELPXSec()
 {
 
 }
 //____________________________________________________________________________
-double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
+double UnifiedQELPXSec::XSec(const Interaction* interaction,
   KinePhaseSpace_t kps) const
 {
   if ( !this->ValidProcess(interaction) ) return 0.;
@@ -118,7 +118,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
 
   // Make sure Q2 is physical
   if ( Q2 <= 0. ) {
-    LOG("CBFSpectFunc", pWARN) << "Q2 <= 0, returning xsec = 0";
+    LOG("UnifiedQELPXSec", pWARN) << "Q2 <= 0, returning xsec = 0";
     return 0.;
   }
 
@@ -140,7 +140,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
     fFormFactors.SetModel( fEMFormFactorsModel );
   }
   else {
-    LOG("CBFSpectFunc", pERROR) << "Unrecognized process type encountered"
+    LOG("UnifiedQELPXSec", pERROR) << "Unrecognized process type encountered"
       << " in genie::CBFSpecFuncQELPXSec::XSec()";
     return 0.;
   }
@@ -169,7 +169,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
   std::complex<double> contraction = L_munu * ATilde_munu;
 
   if ( std::abs(contraction.imag()) > kASmallNum ) {
-    LOG("CBFSpectFunc", pWARN) << "Tensor contraction has nonvanishing"
+    LOG("UnifiedQELPXSec", pWARN) << "Tensor contraction has nonvanishing"
       << " imaginary part!";
   }
 
@@ -198,7 +198,7 @@ double CBFSpectFuncQELPXSec::XSec(const Interaction* interaction,
   return xsec;
 }
 //____________________________________________________________________________
-double CBFSpectFuncQELPXSec::Integral(const Interaction* in) const
+double UnifiedQELPXSec::Integral(const Interaction* in) const
 {
   // Intended for use with genie::NewQELXSec, which is smart
   // enough to handle free nucleon vs. nuclear targets, different
@@ -206,7 +206,7 @@ double CBFSpectFuncQELPXSec::Integral(const Interaction* in) const
   return fXSecIntegrator->Integrate(this, in);
 }
 //____________________________________________________________________________
-bool CBFSpectFuncQELPXSec::ValidProcess(const Interaction* interaction) const
+bool UnifiedQELPXSec::ValidProcess(const Interaction* interaction) const
 {
   if ( interaction->TestBit(kISkipProcessChk) ) return true;
 
@@ -234,19 +234,19 @@ bool CBFSpectFuncQELPXSec::ValidProcess(const Interaction* interaction) const
   return false;
 }
 //____________________________________________________________________________
-void CBFSpectFuncQELPXSec::Configure(const Registry& config)
+void UnifiedQELPXSec::Configure(const Registry& config)
 {
   Algorithm::Configure(config);
   this->LoadConfig();
 }
 //____________________________________________________________________________
-void CBFSpectFuncQELPXSec::Configure(std::string config)
+void UnifiedQELPXSec::Configure(std::string config)
 {
   Algorithm::Configure(config);
   this->LoadConfig();
 }
 //____________________________________________________________________________
-void CBFSpectFuncQELPXSec::LoadConfig(void)
+void UnifiedQELPXSec::LoadConfig(void)
 {
   double thc;
   GetParam( "CabibboAngle", thc ) ;
diff --git a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h
similarity index 91%
rename from src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h
rename to src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h
index f26b22ebb..43a1b4366 100644
--- a/src/Physics/QuasiElastic/XSection/CBFSpectFuncQELPXSec.h
+++ b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h
@@ -1,7 +1,7 @@
 //____________________________________________________________________________
 /*!
 
-\class    genie::CBFSpectFuncQELPXSec
+\class    genie::UnifiedQELPXSec
 
 \brief    Computes quasielastic neutrino-nucleus differential cross sections
           using a contraction of leptonic and hadronic tensors. Intended for
@@ -39,13 +39,13 @@ class QELFormFactorsModelI;
 class QELFormFactors;
 class XSecIntegratorI;
 
-class CBFSpectFuncQELPXSec : public XSecAlgorithmI {
+class UnifiedQELPXSec : public XSecAlgorithmI {
 
 public:
 
-  CBFSpectFuncQELPXSec();
-  CBFSpectFuncQELPXSec(std::string config);
-  virtual ~CBFSpectFuncQELPXSec();
+  UnifiedQELPXSec();
+  UnifiedQELPXSec(std::string config);
+  virtual ~UnifiedQELPXSec();
 
   // XSecAlgorithmI interface implementation
   double XSec            (const Interaction* i, KinePhaseSpace_t k) const;

From 40e301afa50843a07443d25e54bdcc0897f0e5b9 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 4 Dec 2019 00:32:59 -0600
Subject: [PATCH 21/36] Remove the temporary kPSp3NiEOlEl phase space used for
 testing the UnifiedQELPXSec cross section model

---
 src/Framework/Conventions/KinePhaseSpace.h      |  2 --
 .../QuasiElastic/XSection/UnifiedQELPXSec.cxx   | 17 +++++------------
 2 files changed, 5 insertions(+), 14 deletions(-)

diff --git a/src/Framework/Conventions/KinePhaseSpace.h b/src/Framework/Conventions/KinePhaseSpace.h
index 482fa7177..e2d7197fb 100644
--- a/src/Framework/Conventions/KinePhaseSpace.h
+++ b/src/Framework/Conventions/KinePhaseSpace.h
@@ -67,7 +67,6 @@ typedef enum EKinePhaseSpace {
               // TODO: rename this value when the correct variables are identified
   kPSTAfE,
   kPSEgTlOgfE,
-  kPSp3NiEOlEl
 } KinePhaseSpace_t;
 
 class KinePhaseSpace
@@ -121,7 +120,6 @@ class KinePhaseSpace
       // TODO: update this string when the appropriate kinematic variables are known
       case(kPSQELEvGen)   : return "<QELEvGen>"; break;
       case(kPSTAfE)       : return "<{TA}|E>";   break;
-      case(kPSp3NiEOlEl) : return "<p3Ni,E_removal,Omega_l,E_l|E>"; break;
     }
     return "** Undefined kinematic phase space **";
   }
diff --git a/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
index 67591791f..ab45a5d08 100644
--- a/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
@@ -176,22 +176,15 @@ double UnifiedQELPXSec::XSec(const Interaction* interaction,
   // Apply the tensor contraction to the cross section
   xsec *= contraction.real();
 
-  // Multiply by the analytic solution of the energy-conserving delta
-  // function (if needed for the kPSQELEvGen phase space) or by
-  // the Jacobian for the kPSp3NiEOlEl phase space otherwise.
-  if ( kps == kPSQELEvGen ) {
-    xsec *= genie::utils::EnergyDeltaFunctionSolutionQEL( *interaction );
-  }
-  else {
-    xsec *= lepP4.P() * lepP4.E() * p4Nf.E()
-      / ( 4. * qP4.P() * p4Ni.P() );
-  }
+  // Multiply by the analytic solution of the energy-conserving delta function
+  // used by the kPSQELEvGen phase space.
+  xsec *= genie::utils::EnergyDeltaFunctionSolutionQEL( *interaction );
 
   // Check whether variable tranformation is needed
-  if ( kps != kPSQELEvGen && kps != kPSp3NiEOlEl ) {
+  if ( kps != kPSQELEvGen ) {
     // Compute the appropriate Jacobian for transformation to the requested
     // phase space
-    double J = utils::kinematics::Jacobian(interaction, kPSp3NiEOlEl, kps);
+    double J = utils::kinematics::Jacobian(interaction, kPSQELEvGen, kps);
     xsec *= J;
   }
 

From 0ebd7622c22fb62b0558fd3785682c8cbe1c3a0f Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Tue, 18 Feb 2020 23:34:34 -0600
Subject: [PATCH 22/36] Remove some currently unused code in the lepton and
 free nucleon tensor classes. Add extra constructors to use for convenience in
 writing tests.

---
 .../XSection/FreeNucleonTensor.cxx            | 160 ++++++------------
 .../QuasiElastic/XSection/FreeNucleonTensor.h |  20 +--
 .../QuasiElastic/XSection/LeptonTensor.cxx    |  28 +--
 .../QuasiElastic/XSection/LeptonTensor.h      |  12 +-
 4 files changed, 78 insertions(+), 142 deletions(-)

diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index a9801cae3..08fc5699a 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -3,56 +3,37 @@
 #include "Physics/QuasiElastic/XSection/QELFormFactorsModelI.h"
 #include "Framework/ParticleData/PDGCodes.h"
 #include "Framework/ParticleData/PDGLibrary.h"
+#include "Framework/ParticleData/PDGUtils.h"
 
 namespace {
 
-  double curly_Q(const TLorentzVector& probeP4, const TLorentzVector& qTildeP4)
-  {
-    TVector3 qP3 = qTildeP4.Vect();
-    double k_dot_q = probeP4.Vect().Dot( qP3 );
-    double qMag = qP3.Mag();
-    double Q = ( 2. * k_dot_q / qMag ) - qMag;
-    return Q;
-  }
+  // Helper function that chooses the correct value of the nucleon mass
+  // given an input interaction type
+  double GetNucleonMass( genie::InteractionType_t type, int hit_nuc_pdg ) {
 
-  double curly_P(const TLorentzVector& hitNucleonOnShellP4,
-    const TLorentzVector& qTildeP4, double epsilon_B)
-  {
-    double qMag = qTildeP4.P();
-    double omega = qTildeP4.E() + epsilon_B;
-    double P = ( 2.*hitNucleonOnShellP4.E() + omega ) / (2. * qMag);
-    return P;
-  }
+    // This variable stores the value of the nucleon mass that should be
+    // used when computing the free nucleon tensor.
+    double mN = 0.;
 
-  double C1(const TLorentzVector& probeP4, const TLorentzVector qTildeP4,
-    double epsilon_B, double& Q)
-  {
-    double omegaTilde = qTildeP4.E();
-    double omega = omegaTilde + epsilon_B;
-    Q = curly_Q(probeP4, qTildeP4);
-    double k_dot_q = probeP4.Vect().Dot( qTildeP4.Vect() );
-    double coeff1 = (omega - omegaTilde)
-      * ( (Q*Q - omega*omega)*(omega + omegaTilde)
-      - 4.*(probeP4.P()*qTildeP4.P()*Q - omega*k_dot_q) );
-    return coeff1;
-  }
+    genie::PDGLibrary* pdg_lib = genie::PDGLibrary::Instance();
+    double neutron_mass = pdg_lib->Find( genie::kPdgNeutron )->Mass();
+    double proton_mass = pdg_lib->Find( genie::kPdgNeutron )->Mass();
 
-  double C2(const TLorentzVector& probeP4, const TLorentzVector& qTildeP4,
-    const TLorentzVector& hitNucleonOnShellP4, double epsilon_B,
-    double& coeff1)
-  {
-    double Q = 0.;
-    coeff1 = C1(probeP4, qTildeP4, epsilon_B, Q);
-    double P = curly_P(hitNucleonOnShellP4, qTildeP4, epsilon_B);
-    double omegaTilde = qTildeP4.E();
-    double omega = omegaTilde + epsilon_B;
-    double k_dot_p = probeP4.Vect().Dot( hitNucleonOnShellP4.Vect() );
-    double p_dot_q = hitNucleonOnShellP4.Vect().Dot( qTildeP4.Vect() );
-    double k_dot_q = probeP4.Vect().Dot( qTildeP4.Vect() );
-    double coeff2 = coeff1 * std::pow(P, 2);
-    coeff2 += 4. * (omega - omegaTilde) * P * Q * ( k_dot_p
-      - p_dot_q*k_dot_q / qTildeP4.Vect().Mag2() );
-    return coeff2;
+    if ( type == genie::kIntWeakCC ) {
+      // For charged current interactions, the (on-shell) "nucleon mass" used in
+      // the matrix element of the nucleon current is the mean of the neutron and
+      // proton masses
+      mN = (neutron_mass + proton_mass) / 2.;
+    }
+    else {
+      // For kIntEM or kIntWeakNC, use the (on-shell) mass of the initial
+      // struck nucleon.
+      assert( genie::pdg::IsNucleon(hit_nuc_pdg) );
+      if ( hit_nuc_pdg == genie::kPdgNeutron ) mN = neutron_mass;
+      else mN = proton_mass;
+    }
+
+    return mN;
   }
 
 }
@@ -61,26 +42,10 @@ genie::FreeNucleonTensor::FreeNucleonTensor(
   const genie::Interaction& interaction,
   const genie::QELFormFactors& ff)
 {
-  fInteractionType = interaction.ProcInfo().InteractionTypeId();
-
-  // Get the (on-shell) mass of the initial hit nucleon
-  double mNi = interaction.InitState().Tgt().HitNucMass();
-
-  if ( fInteractionType == kIntWeakCC ) {
-    // For charged current interactions, the (on-shell) "nucleon mass" used in
-    // the matrix element of the nucleon current is the mean of the neutron and
-    // proton masses
-    genie::PDGLibrary* pdg_lib = genie::PDGLibrary::Instance();
-    double neutron_mass = pdg_lib->Find( genie::kPdgNeutron )->Mass();
-    double proton_mass = pdg_lib->Find( genie::kPdgNeutron )->Mass();
-    fNucleonMass = (neutron_mass + proton_mass) / 2.;
-  }
-  else {
-    // For kIntEM or kIntWeakNC, use the mass of the initial struck
-    // nucleon. Note that Target::HitNucMass() gets its value from the
-    // PDGLibrary, so this will correctly be the on-shell mass.
-    fNucleonMass = mNi;
-  }
+  // Set nucleon mass appropriately for the interaction type
+  genie::InteractionType_t type = interaction.ProcInfo().InteractionTypeId();
+  int hit_nuc_pdg = interaction.InitState().Tgt().HitNucPdg();
+  fNucleonMass = GetNucleonMass( type, hit_nuc_pdg );
 
   // Compute form factors
   fF1V = ff.F1V();
@@ -90,11 +55,15 @@ genie::FreeNucleonTensor::FreeNucleonTensor(
    fFP = ff.Fp();
   fF3A = ff.F3A();
 
+  // On-shell initial hit nucleon mass
+  double mNi = interaction.InitState().Tgt().HitNucMass();
+  // Initial hit nucleon total energy (possibly off-shell)
   double ENi = interaction.InitState().Tgt().HitNucP4().E();
   TVector3 p3Ni = interaction.InitState().Tgt().HitNucP4().Vect();
   double ENi_on_shell = std::sqrt( p3Ni.Mag2() + mNi*mNi );
+
   // TODO: document. See eq. 3 in Phys. Rev. C 77, 044311 (2008).
-  fEpsilonB = ENi_on_shell - ENi;
+  double epsilon_B = ENi_on_shell - ENi;
 
   TLorentzVector* temp_probeP4 = interaction.InitState().GetProbeP4( kRfLab );
   TLorentzVector probeP4 = *temp_probeP4;
@@ -104,12 +73,28 @@ genie::FreeNucleonTensor::FreeNucleonTensor(
   // called to store the outgoing lepton's 4-momentum
   const TLorentzVector& p4lep = interaction.Kine().FSLeptonP4();
   fqTilde = probeP4 - p4lep;
-  fqTilde.SetE( fqTilde.E() - fEpsilonB );
+  fqTilde.SetE( fqTilde.E() - epsilon_B );
 
   // Initialize the on-shell initial nucleon 4-momentum
   fPNiOnShell = TLorentzVector( p3Ni, ENi_on_shell );
 }
 
+genie::FreeNucleonTensor::FreeNucleonTensor(const TLorentzVector& pNi,
+  const TLorentzVector& q, double F1V, double F2V, double F3V, double FA,
+  double FP, double F3A, genie::InteractionType_t type, int hit_nuc_pdg)
+{
+  fNucleonMass = GetNucleonMass( type, hit_nuc_pdg );
+  fPNiOnShell = pNi;
+  fqTilde = q;
+
+  fF1V = F1V;
+  fF2V = F2V;
+  fF3V = F3V;
+  fFA = FA;
+  fFP = FP;
+  fF3A = F3A;
+}
+
 std::complex<double> genie::FreeNucleonTensor::operator()(
   genie::TensorIndex_t mu, genie::TensorIndex_t nu) const
 {
@@ -173,46 +158,3 @@ std::complex<double> genie::FreeNucleonTensor::operator()(
 
   return result;
 }
-
-std::complex<double> genie::FreeNucleonTensor::Contract(
-  const Rank2LorentzTensorI& other) const
-{
-  std::complex<double> result = genie::Rank2LorentzTensorI::Contract( other );
-
-  // If we're dealing with the contraction of the EM nucleon current with the
-  // leptonic current, then we need to add a couple of terms to correct for
-  // current conservation
-  // TODO: describe the trick you're using
-  const genie::LeptonTensor* lep = dynamic_cast<const genie::LeptonTensor*>(
-    &other );
-  if ( lep && fInteractionType == kIntEM ) {
-
-    const TLorentzVector& probeP4 = lep->GetProbeP4();
-
-    double qTilde2 = fqTilde.M2();
-    double tau = -qTilde2 / ( 4. * std::pow(fNucleonMass, 2) );
-
-    double coeff1 = 0.;
-    double coeff2 = C2(probeP4, fqTilde, fPNiOnShell, fEpsilonB, coeff1);
-
-    double H1t = tau * std::pow(fF1V + fF2V, 2);
-    double H2t = std::pow(fF1V, 2) + ( tau * std::pow(fF2V, 2) );
-
-    double correction = (std::pow(fNucleonMass, 2) / qTilde2) * coeff1 * H1t;
-    correction += coeff2 * H2t;
-
-    // Note that the paper from which these current-conservation corrections
-    // were taken, https://arxiv.org/abs/0711.2031, uses a different
-    // normalization convention for the lepton and free nucleon tensors. To
-    // convert to ours (that of https://arxiv.org/pdf/1506.02355.pdf), we need
-    // to multiply by 16.
-    correction *= 16.;
-
-    // Neglect the correction for now (NuWro doesn't appear to use it, for instance)
-    // TODO: figure out whether there's an error in your implementation or in the
-    // paper you've based this on. When you do, restore the correction.
-    //result += correction;
-  }
-
-  return result;
-}
diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h
index 1a8ad3d19..4c96ecaab 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.h
@@ -21,6 +21,7 @@
 
 // GENIE includes
 #include "Framework/Interaction/Interaction.h"
+#include "Framework/Interaction/InteractionType.h"
 #include "Physics/QuasiElastic/XSection/QELFormFactors.h"
 #include "Physics/QuasiElastic/XSection/Rank2LorentzTensorI.h"
 
@@ -30,16 +31,16 @@ class FreeNucleonTensor : public Rank2LorentzTensorI {
 
 public:
 
+  /// Constructor for typical uses
   FreeNucleonTensor(const genie::Interaction& interaction,
     const genie::QELFormFactors& ff);
 
-  inline virtual ~FreeNucleonTensor() {}
+  /// Constructor to facilitate testing
+  FreeNucleonTensor(const TLorentzVector& pNi, const TLorentzVector& q,
+    double F1V, double F2V, double F3V, double FA, double FP, double F3A,
+    InteractionType_t type, int hit_nuc_pdg);
 
-  // Override the Contract() method of Rank2LorentzTensorI to add in a
-  // correction for conservation of the EM current (see Phys. Rev. C 77, 044311
-  // (2008) eqs. (4)-(5) and accompanying text for an explanation)
-  virtual std::complex<double> Contract(const Rank2LorentzTensorI& other) const
-    /*override*/;
+  inline virtual ~FreeNucleonTensor() {}
 
   /// Retrieves a tensor element corresponding to the given indices
   virtual std::complex<double> operator()(TensorIndex_t mu, TensorIndex_t nu)
@@ -55,13 +56,6 @@ class FreeNucleonTensor : public Rank2LorentzTensorI {
 
   double fNucleonMass; ///< Nucleon mass to use when computing tensor elements
 
-  /// Momentum-dependent binding energy of the initial hit nucleon
-  double fEpsilonB;
-
-  /// Interaction type (EM, CC, NC) to assume when computing the tensor
-  /// elements
-  InteractionType_t fInteractionType;
-
   /// \name Form factors
   // TODO: reference conventions!
   /// @{
diff --git a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
index 83b51ee9d..0dce6768a 100644
--- a/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/LeptonTensor.cxx
@@ -1,4 +1,5 @@
 #include "Framework/Conventions/RefFrame.h"
+#include "Framework/ParticleData/PDGLibrary.h"
 #include "Framework/ParticleData/PDGUtils.h"
 #include "Framework/Messenger/Messenger.h"
 #include "Physics/QuasiElastic/XSection/FreeNucleonTensor.h"
@@ -21,6 +22,20 @@ genie::LeptonTensor::LeptonTensor(const genie::Interaction& interaction)
   fMLep2 = std::pow(interaction.InitState().Probe()->Mass(), 2);
 }
 
+genie::LeptonTensor::LeptonTensor(const TLorentzVector& p4Probe,
+  const TLorentzVector& p4Lep, int probe_pdg, InteractionType_t type)
+{
+  fProbeP4 = p4Probe;
+  fFSLepP4 = p4Lep;
+
+  fInitialLeptonPDG = probe_pdg;
+  fInteractionType = type;
+
+  genie::PDGLibrary* pdg_lib = genie::PDGLibrary::Instance();
+  double probe_mass = pdg_lib->Find( probe_pdg )->Mass();
+  fMLep2 = std::pow( probe_mass, 2 );
+}
+
 std::complex<double> genie::LeptonTensor::operator()(genie::TensorIndex_t mu,
   genie::TensorIndex_t nu) const
 {
@@ -59,16 +74,3 @@ std::complex<double> genie::LeptonTensor::LeviCivitaProduct(
   return std::complex<double>( 0.,
     Rank2LorentzTensorI::LeviCivitaProduct(mu, nu, fProbeP4, fFSLepP4) );
 }
-
-std::complex<double> genie::LeptonTensor::Contract(
-  const Rank2LorentzTensorI& other) const
-{
-  // If we're dealing with the contraction of the EM nucleon current with the
-  // leptonic current, then we need to add a couple of terms to correct for
-  // current conservation. Code to do that lives in
-  // FreeNucleonTensor::Contract(), so call that method if needed.
-  const genie::FreeNucleonTensor* fnt = dynamic_cast<const
-    genie::FreeNucleonTensor*>( &other );
-  if ( fnt && fInteractionType == kIntEM ) return fnt->Contract( *this );
-  else return Rank2LorentzTensorI::Contract( other );
-}
diff --git a/src/Physics/QuasiElastic/XSection/LeptonTensor.h b/src/Physics/QuasiElastic/XSection/LeptonTensor.h
index 3fcebf77f..9a2b39d9c 100644
--- a/src/Physics/QuasiElastic/XSection/LeptonTensor.h
+++ b/src/Physics/QuasiElastic/XSection/LeptonTensor.h
@@ -30,20 +30,18 @@ class LeptonTensor : public Rank2LorentzTensorI {
 
 public:
 
+  /// Constructor for typical uses
   LeptonTensor(const genie::Interaction& interaction);
 
+  /// Constructor to facilitate testing
+  LeptonTensor(const TLorentzVector& p4Probe, const TLorentzVector& p4Lep,
+    int probe_pdg, InteractionType_t type);
+
   inline virtual ~LeptonTensor() {}
 
   inline const TLorentzVector& GetProbeP4() const { return fProbeP4; }
   inline const TLorentzVector& GetFSLeptonP4() const { return fFSLepP4; }
 
-  // Override the Contract() method of Rank2LorentzTensorI to add in a
-  // correction for conservation of the EM current (see Phys. Rev. C 77, 044311
-  // (2008) eqs. (4)-(5) and accompanying text for an explanation) when this
-  // tensor is contracted with the FreeNucleonTensor.
-  virtual std::complex<double> Contract(const Rank2LorentzTensorI& other) const
-    /*override*/;
-
   virtual std::complex<double> operator()(genie::TensorIndex_t mu,
     genie::TensorIndex_t nu) const /*override*/;
 

From d7aad07790413b8465a997a50355e1e4ddd24392 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 19 Feb 2020 04:45:55 -0600
Subject: [PATCH 23/36] Fix typo in the F2V*F3V term in FreeNucleonTensor

---
 src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
index 08fc5699a..6c341eaee 100644
--- a/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
+++ b/src/Physics/QuasiElastic/XSection/FreeNucleonTensor.cxx
@@ -145,7 +145,7 @@ std::complex<double> genie::FreeNucleonTensor::operator()(
   result -= 2. * fFA * fFP * q_mu * q_nu;
 
   // Remaining terms (involving second-class currents)
-  result += (0.5*fF2V*fF3V/M2 - q2*fF3A*fFP/M2 - 2.*fF3A*fFA
+  result += (0.5*q2*fF2V*fF3V/M2 - q2*fF3A*fFP/M2 - 2.*fF3A*fFA
     + 2.*fF1V*fF3V) * (p_mu*q_nu + q_mu*p_nu + q_mu*q_nu);
 
   // ** Overall factor **

From 36e767c691e2b23cebe4adf68cdc0e5bbae278f3 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 19 Feb 2020 19:06:52 -0600
Subject: [PATCH 24/36] Add error handling for missing spectral function files.
 Also add the new version of the spectral function file for 12C to the
 repository.

---
 .../nucl/spectral_functions/pke12_tot.data    | 843 ++++++++++++++++++
 src/Physics/NuclearState/SpectralFunc.cxx     |   7 +
 2 files changed, 850 insertions(+)
 create mode 100644 data/evgen/nucl/spectral_functions/pke12_tot.data

diff --git a/data/evgen/nucl/spectral_functions/pke12_tot.data b/data/evgen/nucl/spectral_functions/pke12_tot.data
new file mode 100644
index 000000000..417117e77
--- /dev/null
+++ b/data/evgen/nucl/spectral_functions/pke12_tot.data
@@ -0,0 +1,843 @@
+80 40
+0 0
+400 800
+0.10000E+02
+   2.5   0.000E+00   7.5   0.000E+00  12.5   0.000E+00  17.5   0.405E-08
+  22.5   0.254E-08  27.5   0.320E-08  32.5   0.484E-08  37.5   0.625E-08
+  42.5   0.546E-08  47.5   0.343E-08  52.5   0.217E-08  57.5   0.137E-08
+  62.5   0.928E-09  67.5   0.678E-09  72.5   0.499E-09  77.5   0.395E-09
+  82.5   0.313E-09  87.5   0.257E-09  92.5   0.215E-09  97.5   0.181E-09
+ 102.5   0.153E-09 107.5   0.134E-09 112.5   0.116E-09 117.5   0.101E-09
+ 122.5   0.446E-11 127.5   0.336E-11 132.5   0.252E-11 137.5   0.178E-11
+ 142.5   0.111E-11 147.5   0.552E-12 152.5   0.172E-12 157.5   0.784E-13
+ 162.5   0.710E-13 167.5   0.487E-13 172.5   0.261E-13 177.5   0.101E-13
+ 182.5   0.631E-15 187.5   0.000E+00 192.5   0.000E+00 197.5   0.000E+00
+ 202.5   0.000E+00 207.5   0.738E-17 212.5   0.169E-17 217.5   0.000E+00
+ 222.5   0.000E+00 227.5   0.000E+00 232.5   0.000E+00 237.5   0.000E+00
+ 242.5   0.000E+00 247.5   0.000E+00 252.5   0.000E+00 257.5   0.000E+00
+ 262.5   0.000E+00 267.5   0.000E+00 272.5   0.000E+00 277.5   0.000E+00
+ 282.5   0.000E+00 287.5   0.000E+00 292.5   0.000E+00 297.5   0.000E+00
+ 302.5   0.000E+00 307.5   0.000E+00 312.5   0.000E+00 317.5   0.000E+00
+ 322.5   0.000E+00 327.5   0.000E+00 332.5   0.000E+00 337.5   0.000E+00
+ 342.5   0.000E+00 347.5   0.000E+00 352.5   0.000E+00 357.5   0.000E+00
+ 362.5   0.000E+00 367.5   0.000E+00 372.5   0.000E+00 377.5   0.000E+00
+ 382.5   0.000E+00 387.5   0.000E+00 392.5   0.000E+00 397.5   0.000E+00
+ 0.30000E+02
+   2.5   0.000E+00   7.5   0.000E+00  12.5   0.000E+00  17.5   0.704E-08
+  22.5   0.329E-08  27.5   0.326E-08  32.5   0.469E-08  37.5   0.591E-08
+  42.5   0.511E-08  47.5   0.322E-08  52.5   0.202E-08  57.5   0.129E-08
+  62.5   0.882E-09  67.5   0.650E-09  72.5   0.480E-09  77.5   0.378E-09
+  82.5   0.302E-09  87.5   0.247E-09  92.5   0.206E-09  97.5   0.175E-09
+ 102.5   0.149E-09 107.5   0.129E-09 112.5   0.111E-09 117.5   0.983E-10
+ 122.5   0.394E-11 127.5   0.315E-11 132.5   0.221E-11 137.5   0.139E-11
+ 142.5   0.807E-12 147.5   0.376E-12 152.5   0.738E-13 157.5   0.136E-14
+ 162.5   0.476E-15 167.5   0.110E-15 172.5   0.591E-17 177.5   0.000E+00
+ 182.5   0.000E+00 187.5   0.228E-14 192.5   0.266E-14 197.5   0.994E-15
+ 202.5   0.113E-15 207.5   0.000E+00 212.5   0.000E+00 217.5   0.000E+00
+ 222.5   0.000E+00 227.5   0.000E+00 232.5   0.000E+00 237.5   0.000E+00
+ 242.5   0.000E+00 247.5   0.000E+00 252.5   0.000E+00 257.5   0.000E+00
+ 262.5   0.000E+00 267.5   0.000E+00 272.5   0.000E+00 277.5   0.000E+00
+ 282.5   0.000E+00 287.5   0.000E+00 292.5   0.000E+00 297.5   0.000E+00
+ 302.5   0.000E+00 307.5   0.000E+00 312.5   0.000E+00 317.5   0.000E+00
+ 322.5   0.000E+00 327.5   0.000E+00 332.5   0.000E+00 337.5   0.000E+00
+ 342.5   0.000E+00 347.5   0.000E+00 352.5   0.000E+00 357.5   0.000E+00
+ 362.5   0.000E+00 367.5   0.000E+00 372.5   0.000E+00 377.5   0.000E+00
+ 382.5   0.000E+00 387.5   0.000E+00 392.5   0.000E+00 397.5   0.000E+00
+ 0.50000E+02
+   2.5   0.000E+00   7.5   0.000E+00  12.5   0.000E+00  17.5   0.109E-07
+  22.5   0.416E-08  27.5   0.325E-08  32.5   0.435E-08  37.5   0.540E-08
+  42.5   0.464E-08  47.5   0.291E-08  52.5   0.181E-08  57.5   0.117E-08
+  62.5   0.808E-09  67.5   0.596E-09  72.5   0.444E-09  77.5   0.350E-09
+  82.5   0.280E-09  87.5   0.229E-09  92.5   0.192E-09  97.5   0.163E-09
+ 102.5   0.140E-09 107.5   0.120E-09 112.5   0.105E-09 117.5   0.929E-10
+ 122.5   0.544E-11 127.5   0.418E-11 132.5   0.307E-11 137.5   0.219E-11
+ 142.5   0.146E-11 147.5   0.943E-12 152.5   0.608E-12 157.5   0.374E-12
+ 162.5   0.223E-12 167.5   0.137E-12 172.5   0.807E-13 177.5   0.387E-13
+ 182.5   0.120E-13 187.5   0.000E+00 192.5   0.000E+00 197.5   0.000E+00
+ 202.5   0.000E+00 207.5   0.886E-17 212.5   0.204E-17 217.5   0.000E+00
+ 222.5   0.000E+00 227.5   0.000E+00 232.5   0.000E+00 237.5   0.000E+00
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+ 322.5   0.169E-12 327.5   0.168E-12 332.5   0.166E-12 337.5   0.165E-12
+ 342.5   0.163E-12 347.5   0.160E-12 352.5   0.158E-12 357.5   0.155E-12
+ 362.5   0.151E-12 367.5   0.147E-12 372.5   0.143E-12 377.5   0.137E-12
+ 382.5   0.133E-12 387.5   0.129E-12 392.5   0.125E-12 397.5   0.121E-12
+ 0.79000E+03
+   2.5   0.000E+00   7.5   0.000E+00  12.5   0.000E+00  17.5   0.000E+00
+  22.5   0.189E-16  27.5   0.454E-16  32.5   0.579E-16  37.5   0.608E-16
+  42.5   0.841E-16  47.5   0.151E-15  52.5   0.245E-15  57.5   0.378E-15
+  62.5   0.653E-15  67.5   0.110E-14  72.5   0.158E-14  77.5   0.202E-14
+  82.5   0.251E-14  87.5   0.316E-14  92.5   0.404E-14  97.5   0.520E-14
+ 102.5   0.642E-14 107.5   0.756E-14 112.5   0.875E-14 117.5   0.102E-13
+ 122.5   0.120E-13 127.5   0.141E-13 132.5   0.160E-13 137.5   0.179E-13
+ 142.5   0.199E-13 147.5   0.222E-13 152.5   0.248E-13 157.5   0.277E-13
+ 162.5   0.309E-13 167.5   0.343E-13 172.5   0.381E-13 177.5   0.422E-13
+ 182.5   0.465E-13 187.5   0.510E-13 192.5   0.549E-13 197.5   0.591E-13
+ 202.5   0.636E-13 207.5   0.676E-13 212.5   0.721E-13 217.5   0.767E-13
+ 222.5   0.812E-13 227.5   0.858E-13 232.5   0.898E-13 237.5   0.937E-13
+ 242.5   0.977E-13 247.5   0.102E-12 252.5   0.106E-12 257.5   0.110E-12
+ 262.5   0.114E-12 267.5   0.116E-12 272.5   0.120E-12 277.5   0.123E-12
+ 282.5   0.126E-12 287.5   0.128E-12 292.5   0.130E-12 297.5   0.132E-12
+ 302.5   0.134E-12 307.5   0.136E-12 312.5   0.137E-12 317.5   0.139E-12
+ 322.5   0.139E-12 327.5   0.140E-12 332.5   0.140E-12 337.5   0.140E-12
+ 342.5   0.139E-12 347.5   0.139E-12 352.5   0.138E-12 357.5   0.137E-12
+ 362.5   0.135E-12 367.5   0.132E-12 372.5   0.129E-12 377.5   0.126E-12
+ 382.5   0.122E-12 387.5   0.119E-12 392.5   0.116E-12 397.5   0.114E-12
diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index 42cfc2b55..4ef12dbca 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -244,6 +244,13 @@ TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
 
   std::ifstream in_file( full_file_name );
 
+  // Check that the file exists and is readable
+  if ( !in_file.good() ) {
+    LOG("SpectralFunc", pERROR) << "Could not read spectral function table"
+      << " from the file " << full_file_name;
+    std::exit( 1 );
+  }
+
   // TODO: add I/O error handling
 
   // Read the histogram bin boundary information from the

From d83afed03a490435568846ca8dc91996e55942cc Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 19 Feb 2020 22:05:52 -0600
Subject: [PATCH 25/36] Add missing Interaction.h header in AGKLowW2019.h. A
 failure to include it triggers rootcling errors in some circumstances.

---
 src/Physics/Hadronization/AGKYLowW2019.h | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/Physics/Hadronization/AGKYLowW2019.h b/src/Physics/Hadronization/AGKYLowW2019.h
index e98947f69..be2bb009a 100644
--- a/src/Physics/Hadronization/AGKYLowW2019.h
+++ b/src/Physics/Hadronization/AGKYLowW2019.h
@@ -34,7 +34,7 @@
 
 \cpright  Copyright (c) 2003-2020, The GENIE Collaboration
           For the full text of the license visit http://copyright.genie-mc.org
-          
+
 */
 //____________________________________________________________________________
 
@@ -45,7 +45,7 @@
 
 #include "Physics/Decay/Decayer.h"
 #include "Framework/EventGen/EventRecordVisitorI.h"
-
+#include "Framework/Interaction/Interaction.h"
 
 class TF1;
 

From eeb33535e766b89ff1bb45ed7515f5d798bf9f52 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Tue, 25 Feb 2020 11:00:14 -0600
Subject: [PATCH 26/36] Make corrections to NC form factors in the
 LwlynSmithFFNC class. Add a new abstract interface
 (NCELStrangeFormFactorsModelI) that handles calculations of the heavy quark
 contribution to the form factors (thought to be dominated by strange quarks).
 Add a derived class called AhrensNCELStrangeFF that implements the NC strange
 form factors in a way that is equivalent to the Ahrens treatment.

---
 config/AhrensNCELStrangeFF.xml                |  21 +++
 config/LwlynSmithFFEM.xml                     |  18 +--
 config/LwlynSmithFFNC.xml                     |  11 +-
 config/UnifiedQELPXSec.xml                    |   3 +-
 config/master_config.xml                      |   1 +
 .../QuasiElastic/XSection/AhrensNCELPXSec.cxx |   2 +-
 .../XSection/AhrensNCELStrangeFF.cxx          |  71 +++++++++++
 .../XSection/AhrensNCELStrangeFF.h            |  65 ++++++++++
 src/Physics/QuasiElastic/XSection/LinkDef.h   |   3 +
 .../QuasiElastic/XSection/LwlynSmithFFNC.cxx  | 120 ++++++++++++------
 .../QuasiElastic/XSection/LwlynSmithFFNC.h    |  19 ++-
 .../XSection/NCELStrangeFormFactorsModelI.cxx |  37 ++++++
 .../XSection/NCELStrangeFormFactorsModelI.h   |  63 +++++++++
 13 files changed, 368 insertions(+), 66 deletions(-)
 create mode 100644 config/AhrensNCELStrangeFF.xml
 create mode 100644 src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.h
 create mode 100644 src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.cxx
 create mode 100644 src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h

diff --git a/config/AhrensNCELStrangeFF.xml b/config/AhrensNCELStrangeFF.xml
new file mode 100644
index 000000000..912c6c55c
--- /dev/null
+++ b/config/AhrensNCELStrangeFF.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+
+<alg_conf>
+
+<!--
+Configuration sets for Ahrens NCEL strange form factors
+
+Configurable Parameters:
+........................................................................................................
+Name                     Type     Optional   Comment                     Default
+AxialFormFactorModel     alg      No         Axial form factor model
+EL-Axial-Eta             double   No         FAs = -1. * Eta * FA_CC
+........................................................................................................
+-->
+
+  <param_set name="Default">
+    <param type="alg" name="AxialFormFactorModel"> genie::DipoleAxialFormFactorModel/Default </param>
+    <param type="double" name="EL-Axial-Eta"> 0.12 </param>
+  </param_set>
+
+</alg_conf>
diff --git a/config/LwlynSmithFFEM.xml b/config/LwlynSmithFFEM.xml
index beb4e4dc0..909eb0b75 100644
--- a/config/LwlynSmithFFEM.xml
+++ b/config/LwlynSmithFFEM.xml
@@ -21,23 +21,13 @@ SU3-F                         double   No                                     Co
 -->
 
   <param_set name="Default"> 
-    <param type="string" name="CommonParam"> WeakInt,MagnMoments,StrongInt,ElasticFF </param>
-  </param_set>
-
-  <param_set name="Dipole"> 
-     <param type="alg" name="AxialFormFactorModel"> genie::DipoleAxialFormFactorModel/Default </param>
-
-  </param_set>
 
-  <param_set name="ZExp"> 
-     <param type="alg" name="AxialFormFactorModel"> genie::ZExpAxialFormFactorModel/Default </param>
-
-  </param_set>
+    <param type="string" name="CommonParam"> WeakInt,MagnMoments,StrongInt,ElasticFF </param>
 
-  <param_set name="RunningMA"> 
-     <param type="alg" name="AxialFormFactorModel"> genie::KuzminNaumov2016AxialFormFactorModel/Default </param>
+    <!-- Dummy axial form factor model required since this class inherits from LwlynSmithFF.
+         All axial form factors are set to zero by LwlynSmithFFEM. -->
+    <param type="alg" name="AxialFormFactorModel"> genie::DipoleAxialFormFactorModel/Default </param>
 
   </param_set>
 
-
 </alg_conf>
diff --git a/config/LwlynSmithFFNC.xml b/config/LwlynSmithFFNC.xml
index b36dd6343..06b4e432b 100644
--- a/config/LwlynSmithFFNC.xml
+++ b/config/LwlynSmithFFNC.xml
@@ -8,22 +8,25 @@ Configuration sets for Llewellyn-Smith QEL NC form factors
 Configurable Parameters:
 ........................................................................................................
 Name                     Type     Optional   Comment                     Default
-ElasticFormFactorsModel       alg      No         Elastic form factors model  CommonParam[ElasticFF]
+ElasticFormFactorsModel       alg      No      Elastic form factors model     CommonParam[ElasticFF]
 UseElFFTransverseEnhancement  bool     No                                     CommonParam[ElasticFF]
-TransverseEnhancement         alg      No         TransverseEnhancement model CommonParam[ElasticFF]
-AxialFormFactorModel          alg      No         Axial form factor model
+TransverseEnhancement         alg      No      TransverseEnhancement model    CommonParam[ElasticFF]
+AxialFormFactorModel          alg      No      Axial form factor model
 AnomMagnMoment-P              double   No                                     CommonParam[MagnMoments]
 AnomMagnMoment-N              double   No                                     CommonParam[MagnMoments]
-WeinbergAngle                 double   No         Weinberg angle              CommonParam[WeakInt]
+WeinbergAngle                 double   No      Weinberg angle                 CommonParam[WeakInt]
 SU3-D                         double   No                                     CommonParam[StrongInt]
 SU3-F                         double   No                                     CommonParam[StrongInt]
+StrangeFormFactorsModel       alg      No      NC strange form factors model
 ........................................................................................................
 -->
 
   <param_set name="Default">
+
     <param type="string" name="CommonParam"> WeakInt,MagnMoments,StrongInt,ElasticFF </param>
 
     <param type="alg" name="AxialFormFactorModel"> genie::DipoleAxialFormFactorModel/Default </param>
+    <param type="alg" name="StrangeFormFactorsModel"> genie::AhrensNCELStrangeFF/Default </param>
 
   </param_set>
 
diff --git a/config/UnifiedQELPXSec.xml b/config/UnifiedQELPXSec.xml
index 660d2c968..057fac43e 100644
--- a/config/UnifiedQELPXSec.xml
+++ b/config/UnifiedQELPXSec.xml
@@ -39,11 +39,10 @@ IntegralNucleonBindingMode           alg      No
     <param type="alg"  name="PauliBlockerAlg"> genie::PauliBlocker/Default </param>
 
     <param type="alg"  name="NCFormFactorsAlg"> genie::LwlynSmithFFNC/Default </param>
-    <param type="alg"  name="EMFormFactorsAlg"> genie::LwlynSmithFFEM/Dipole </param>
+    <param type="alg"  name="EMFormFactorsAlg"> genie::LwlynSmithFFEM/Default </param>
 
   </param_set>
 
-
   <param_set name="Dipole">
      <param type="alg"  name="CCFormFactorsAlg"> genie::LwlynSmithFFCC/Dipole </param>
   </param_set>
diff --git a/config/master_config.xml b/config/master_config.xml
index e8b9399f0..fd1e8d6a0 100644
--- a/config/master_config.xml
+++ b/config/master_config.xml
@@ -111,6 +111,7 @@
    <config alg="genie::DipoleAxialFormFactorModel">              DipoleAxialFormFactorModel.xml              </config>
    <config alg="genie::ZExpAxialFormFactorModel">                ZExpAxialFormFactorModel.xml                </config>
    <config alg="genie::KuzminNaumov2016AxialFormFactorModel">    KuzminNaumov2016AxialFormFactorModel.xml    </config>
+   <config alg="genie::AhrensNCELStrangeFF">                     AhrensNCELStrangeFF.xml                     </config>
    <config alg="genie::LwlynSmithFFCC">                          LwlynSmithFFCC.xml                          </config>
    <config alg="genie::LwlynSmithFFDeltaS">                      LwlynSmithFFDeltaS.xml                      </config>
    <config alg="genie::TransverseEnhancementFFModel">            TransverseEnhancementFFModel.xml            </config>
diff --git a/src/Physics/QuasiElastic/XSection/AhrensNCELPXSec.cxx b/src/Physics/QuasiElastic/XSection/AhrensNCELPXSec.cxx
index 7bb3cedc1..85e5e9c34 100644
--- a/src/Physics/QuasiElastic/XSection/AhrensNCELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/AhrensNCELPXSec.cxx
@@ -4,7 +4,7 @@
  For the full text of the license visit http://copyright.genie-mc.org
 
  Costas Andreopoulos <constantinos.andreopoulos \at cern.ch>
- University of Liverpool & STFC Rutherford Appleton Laboratory 
+ University of Liverpool & STFC Rutherford Appleton Laboratory
 */
 //____________________________________________________________________________
 
diff --git a/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx b/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx
new file mode 100644
index 000000000..50b0b184b
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx
@@ -0,0 +1,71 @@
+ //____________________________________________________________________________
+/*
+ Copyright (c) 2003-2020, The GENIE Collaboration
+ For the full text of the license visit http://copyright.genie-mc.org
+
+ Steven Gardiner <gardiner \at fnal.gov>
+ Fermi National Accelerator Laboratory
+*/
+//____________________________________________________________________________
+
+#include "Framework/ParticleData/PDGUtils.h"
+#include "Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.h"
+
+using namespace genie;
+
+//____________________________________________________________________________
+AhrensNCELStrangeFF::AhrensNCELStrangeFF()
+  : NCELStrangeFormFactorsModelI("genie::AhrensNCELStrangeFF")
+{
+
+}
+//____________________________________________________________________________
+AhrensNCELStrangeFF::AhrensNCELStrangeFF(string config)
+  : NCELStrangeFormFactorsModelI("genie::AhrensNCELStrangeFF", config)
+{
+
+}
+//____________________________________________________________________________
+AhrensNCELStrangeFF::~AhrensNCELStrangeFF()
+{
+
+}
+//____________________________________________________________________________
+void AhrensNCELStrangeFF::Configure(const Registry& config)
+{
+  Algorithm::Configure( config );
+  this->LoadConfig();
+}
+//____________________________________________________________________________
+void AhrensNCELStrangeFF::Configure(string config)
+{
+  Algorithm::Configure( config );
+  this->LoadConfig();
+}
+//____________________________________________________________________________
+void AhrensNCELStrangeFF::LoadConfig(void)
+{
+  fAxFFModel = dynamic_cast< const AxialFormFactorModelI* >(
+    this->SubAlg("AxialFormFactorModel") );
+
+  assert( fAxFFModel );
+  fAxFF.SetModel( fAxFFModel );
+
+  // TODO: document this (cite Ahrens paper)
+  GetParam( "EL-Axial-Eta", fEta ) ;
+}
+
+double AhrensNCELStrangeFF::FAs(const Interaction* interaction) const
+{
+  // Compute FA-CC
+  fAxFF.Calculate( interaction );
+  double FA_CC = fAxFF.FA();
+
+  int sign = 1;
+  int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
+  if ( pdg::IsNeutron(hit_nuc_pdg) ) sign = -1;
+
+  // Compute the strange axial NC form factor
+  double FAs = -1. * fEta * FA_CC;
+  return FAs;
+}
diff --git a/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.h b/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.h
new file mode 100644
index 000000000..86bac4f41
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.h
@@ -0,0 +1,65 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::AhrensNCELStrangeFF
+
+\brief    Implements the NCELStrangeFormFactorsModelI interface.
+\todo     TODO: Cite Ahrens paper
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
+\created  Feb 23, 2020
+
+\cpright  Copyright (c) 2003-2020, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+*/
+//____________________________________________________________________________
+
+#ifndef _AHRENS_NCEL_STRANGE_FORM_FACTORS_I_H_
+#define _AHRENS_NCEL_STRANGE_FORM_FACTORS_I_H_
+
+#include "Framework/Algorithm/Algorithm.h"
+#include "Framework/Interaction/Interaction.h"
+
+#include "Physics/QuasiElastic/XSection/AxialFormFactor.h"
+#include "Physics/QuasiElastic/XSection/AxialFormFactorModelI.h"
+#include "Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h"
+
+namespace genie {
+
+class AhrensNCELStrangeFF : public NCELStrangeFormFactorsModelI {
+
+public:
+  AhrensNCELStrangeFF();
+  AhrensNCELStrangeFF( std::string config );
+  virtual ~AhrensNCELStrangeFF();
+
+  // NCELStrangeFormFactorsModelI interface implementation
+  inline virtual double F1Vs (const Interaction* /*interaction*/) const
+    { return 0.; }
+  inline virtual double F2Vs (const Interaction* /*interaction*/) const
+    { return 0.; }
+  inline virtual double FPs  (const Interaction* /*interaction*/) const
+    { return 0.; }
+
+  virtual double FAs(const Interaction* interaction) const;
+
+  // Overload the Algorithm::Configure() methods to load private data
+  // members from configuration options
+  virtual void Configure(const Registry & config);
+  virtual void Configure(string config);
+
+  virtual void LoadConfig (void);
+
+protected:
+
+  const AxialFormFactorModelI * fAxFFModel;
+  mutable AxialFormFactor fAxFF;
+
+  double fEta;
+
+};
+
+} // genie namespace
+#endif // _AHRENS_NCEL_STRANGE_FORM_FACTORS_I_H_
diff --git a/src/Physics/QuasiElastic/XSection/LinkDef.h b/src/Physics/QuasiElastic/XSection/LinkDef.h
index b4bc7202d..82db23fa3 100644
--- a/src/Physics/QuasiElastic/XSection/LinkDef.h
+++ b/src/Physics/QuasiElastic/XSection/LinkDef.h
@@ -45,4 +45,7 @@
 #pragma link C++ class genie::FreeNucleonTensor;
 #pragma link C++ class genie::UnifiedQELPXSec;
 
+#pragma link C++ class genie::NCELStrangeFormFactorsModelI;
+#pragma link C++ class genie::AhrensNCELStrangeFF;
+
 #endif
diff --git a/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.cxx b/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.cxx
index 04f406cfa..e325b58f8 100644
--- a/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.cxx
+++ b/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.cxx
@@ -5,12 +5,16 @@
 
  Costas Andreopoulos <constantinos.andreopoulos \at cern.ch>
  University of Liverpool & STFC Rutherford Appleton Laboratory
+
+ Steven Gardiner <gardiner \at fnal.gov>
+ Fermi National Accelerator Laboratory
 */
 //____________________________________________________________________________
 
-#include <TMath.h>
+#include "TMath.h"
 
 #include "Framework/Conventions/Constants.h"
+#include "Framework/ParticleData/PDGUtils.h"
 #include "Physics/QuasiElastic/XSection/ELFormFactors.h"
 #include "Physics/QuasiElastic/XSection/ELFormFactorsModelI.h"
 #include "Physics/QuasiElastic/XSection/LwlynSmithFFNC.h"
@@ -18,6 +22,19 @@
 using namespace genie;
 using namespace genie::constants;
 
+namespace {
+
+  // Helper function that sets a sign based on the isospin of the hit nucleon.
+  // This function chooses + (-) for proton (neutron).
+  int nucleon_sign( const Interaction* interaction ) {
+    int sign = 1;
+    int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
+    if ( pdg::IsNeutron(hit_nuc_pdg) ) sign = -1;
+    return sign;
+  }
+
+}
+
 //____________________________________________________________________________
 LwlynSmithFFNC::LwlynSmithFFNC() :
 LwlynSmithFF("genie::LwlynSmithFFNC")
@@ -36,62 +53,85 @@ LwlynSmithFFNC::~LwlynSmithFFNC()
 
 }
 //____________________________________________________________________________
-double LwlynSmithFFNC::F1V(const Interaction * interaction) const
+void LwlynSmithFFNC::LoadConfig(void)
+{
+  // First configure the class members inherited from LwlynSmithFF normally
+  LwlynSmithFF::LoadConfig();
+
+  // Then configure the NC strange form factors model
+  fStrangeNCFFModel = dynamic_cast< const NCELStrangeFormFactorsModelI* >(
+    this->SubAlg("StrangeFormFactorsModel") );
+  assert( fStrangeNCFFModel );
+}
+//____________________________________________________________________________
+double LwlynSmithFFNC::F1V(const Interaction* interaction) const
 {
-  //-- calculate F1V-CC
-  double F1V_CC = LwlynSmithFF::F1V(interaction);
+  int sign = nucleon_sign( interaction );
 
-  //-- calculate F1p (see hep-ph/0107261)
-  fELFF.Calculate(interaction);
-  double t   = LwlynSmithFF::tau(interaction);
-  double F1p = fELFF.Gep() - t * fELFF.Gmp();
+  // Calculate F1V-CC
+  double F1V_CC = LwlynSmithFF::F1V( interaction );
 
-  //-- calculate F1V-NC
-  double F1V_NC = 0.5*F1V_CC - 2*fSin28w*F1p;
+  // Calculate F2V-EM
+  int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
+  double F1V_EM = 0.;
+  if ( pdg::IsNeutron(hit_nuc_pdg) ) F1V_EM = this->F1N( interaction );
+  else F1V_EM = this->F1P( interaction );
+
+  // Calculate the strange NC form factor
+  double F1Vs = fStrangeNCFFModel->F1Vs( interaction );
+
+  double F1V_NC = sign*0.5*F1V_CC - 2.*fSin28w*F1V_EM - 0.5*F1Vs;
   return F1V_NC;
 }
 //____________________________________________________________________________
-double LwlynSmithFFNC::xiF2V(const Interaction * interaction) const
+double LwlynSmithFFNC::xiF2V(const Interaction* interaction) const
 {
-  //-- calculate xiF2V_CC
-  double xiF2V_CC = LwlynSmithFF::xiF2V(interaction);
+  int sign = nucleon_sign( interaction );
+
+  // Calculate F2V_CC
+  double F2V_CC = LwlynSmithFF::xiF2V( interaction );
 
-  //-- calculate F2p (see hep-ph/0107261)
-  fELFF.Calculate(interaction);
-  double F2p = (fELFF.Gmp() - fELFF.Gep()) / fMuP;
+  // Calculate F2V_EM
+  int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
+  double F2V_EM = 0.;
+  if ( pdg::IsNeutron(hit_nuc_pdg) ) F2V_EM = this->F2N( interaction );
+  else F2V_EM = this->F2P( interaction );
 
-  //-- calculate xiF2-NC
-  double xiF2V_NC = 0.5*xiF2V_CC - 2*fSin28w*(fMuP-1)*F2p;
-  return xiF2V_NC;
+  // Calculate the strange NC form factor
+  double F2Vs = fStrangeNCFFModel->F2Vs( interaction );
+
+  // Calculate F2V-NC
+  double F2V_NC = sign*0.5*F2V_CC - 2.*fSin28w*F2V_EM - 0.5*F2Vs;
+  return F2V_NC;
 }
 //____________________________________________________________________________
-double LwlynSmithFFNC::FA(const Interaction * interaction) const
+double LwlynSmithFFNC::FA(const Interaction* interaction) const
 {
-  //-- calculate FA_CC(q2)
-  double FA_CC = LwlynSmithFF::FA(interaction);
+  int sign = nucleon_sign( interaction );
+
+  // Calculate FA_CC
+  double FA_CC = LwlynSmithFF::FA( interaction );
 
-  //-- calculate & return FA_NC(q2)
-  double FA_NC = 0.5 * FA_CC;
+  // Calculate the strange NC form factor
+  double FAs = fStrangeNCFFModel->FAs( interaction );
+
+  // Calculate FA_NC
+  double FA_NC = sign*0.5*FA_CC - 0.5*FAs;
   return FA_NC;
 }
 //____________________________________________________________________________
 double LwlynSmithFFNC::Fp(const Interaction * interaction) const
 {
-  //-- get the momentum transfer
-  const Kinematics & kine = interaction->Kine();
-  double q2 = kine.q2();
-
-  //-- get struck nucleon mass & pion pass
-  const InitialState & init_state = interaction->InitState();
-  double MN   = init_state.Tgt().HitNucMass();
-  double MN2  = TMath::Power(MN,        2);
-  double Mpi2 = TMath::Power(kPionMass, 2);
-
-  //-- calculate FA
-  double fa = this->FA(interaction);
-
-  //-- calculate and return Fp
-  double Fp_NC = 2*MN2*fa/(Mpi2-q2);
-  return Fp_NC;
+  int sign = nucleon_sign( interaction );
+
+  // Calculate FP_CC
+  double FP_CC = LwlynSmithFF::Fp( interaction );
+
+  // Calculate the strange NC form factor
+  double FPs = fStrangeNCFFModel->FPs( interaction );
+
+  // Calculate FP_NC
+  double FP_NC = sign*0.5*FP_CC - 0.5*FPs;
+  return FP_NC;
 }
 //____________________________________________________________________________
diff --git a/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.h b/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.h
index 44a5e5c75..50b73a3e2 100644
--- a/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.h
+++ b/src/Physics/QuasiElastic/XSection/LwlynSmithFFNC.h
@@ -4,18 +4,18 @@
 \class    genie::LwlynSmithFFNC
 
 \brief    Concrete implementation of the QELFormFactorsModelI :
-          Form Factors for Quasi Elastic NC vN scattering according to
-          Llewellyn-Smith model.
-
-\ref      E.A.Paschos and J.Y.Yu, hep-ph/0107261
+          Form Factors for Quasi Elastic NC vN scattering
 
 \author   Costas Andreopoulos <constantinos.andreopoulos \at cern.ch>
           University of Liverpool & STFC Rutherford Appleton Laboratory
 
+          Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
 \created  May 03, 2004
 
 \cpright  Copyright (c) 2003-2020, The GENIE Collaboration
-          For the full text of the license visit http://copyright.genie-mc.org          
+          For the full text of the license visit http://copyright.genie-mc.org
 */
 //____________________________________________________________________________
 
@@ -23,6 +23,7 @@
 #define _LLEWELLYN_SMITH_NC_FORM_FACTOR_MODEL_H_
 
 #include "Physics/QuasiElastic/XSection/LwlynSmithFF.h"
+#include "Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h"
 
 namespace genie {
 
@@ -38,6 +39,14 @@ class LwlynSmithFFNC : public LwlynSmithFF {
   double xiF2V   (const Interaction * interaction) const;
   double FA      (const Interaction * interaction) const;
   double Fp      (const Interaction * interaction) const;
+
+protected:
+
+  // Override LwlynSmithFF::LoadConfig() to also configure the
+  // strange NC form factors model
+  virtual void LoadConfig (void);
+
+  const NCELStrangeFormFactorsModelI* fStrangeNCFFModel;
 };
 
 }       // genie namespace
diff --git a/src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.cxx b/src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.cxx
new file mode 100644
index 000000000..778458404
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.cxx
@@ -0,0 +1,37 @@
+//____________________________________________________________________________
+/*
+ Copyright (c) 2003-2020, The GENIE Collaboration
+ For the full text of the license visit http://copyright.genie-mc.org
+
+ Steven Gardiner <gardiner \at fnal.gov>
+ Fermi National Accelerator Laboratory
+*/
+//____________________________________________________________________________
+
+#include "Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h"
+
+using namespace genie;
+
+//____________________________________________________________________________
+NCELStrangeFormFactorsModelI::NCELStrangeFormFactorsModelI() : Algorithm()
+{
+
+}
+//____________________________________________________________________________
+NCELStrangeFormFactorsModelI::NCELStrangeFormFactorsModelI(std::string name)
+  : Algorithm(name)
+{
+
+}
+//____________________________________________________________________________
+NCELStrangeFormFactorsModelI::NCELStrangeFormFactorsModelI(std::string name,
+  std::string config) : Algorithm(name, config)
+{
+
+}
+//____________________________________________________________________________
+NCELStrangeFormFactorsModelI::~NCELStrangeFormFactorsModelI()
+{
+
+}
+//____________________________________________________________________________
diff --git a/src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h b/src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h
new file mode 100644
index 000000000..bd71e2c1a
--- /dev/null
+++ b/src/Physics/QuasiElastic/XSection/NCELStrangeFormFactorsModelI.h
@@ -0,0 +1,63 @@
+//____________________________________________________________________________
+/*!
+
+\class    genie::NCELStrangeFormFactorsModelI
+
+\brief    Pure abstract base class. Defines the NCELStrangeFormFactorsModelI
+          interface to be implemented by any algorithmic class computing
+          strange form factors for neutral current elastic scattering
+
+\author   Steven Gardiner <gardiner \at fnal.gov>
+          Fermi National Accelerator Laboratory
+
+\created  Feb 23, 2020
+
+\cpright  Copyright (c) 2003-2020, The GENIE Collaboration
+          For the full text of the license visit http://copyright.genie-mc.org
+*/
+//____________________________________________________________________________
+
+#ifndef _NCEL_STRANGE_FORM_FACTORS_MODEL_I_H_
+#define _NCEL_STRANGE_FORM_FACTORS_MODEL_I_H_
+
+#include "Framework/Algorithm/Algorithm.h"
+#include "Framework/Interaction/Interaction.h"
+
+namespace genie {
+
+class NCELStrangeFormFactorsModelI : public Algorithm {
+
+public:
+  virtual ~NCELStrangeFormFactorsModelI();
+
+  //! Compute the strange form factor F1Vs for the input interaction
+  virtual double F1Vs(const Interaction* interaction) const = 0;
+
+  //! Compute the strange form factor F2Vs for the input interaction
+  virtual double F2Vs(const Interaction* interaction) const = 0;
+
+  //! Compute the strange form factor FAs for the input interaction
+  virtual double FAs(const Interaction* interaction) const = 0;
+
+  //! Compute the strange form factor FPs for the input interaction
+  virtual double FPs(const Interaction* interaction) const = 0;
+
+  //! \name Second-class currents
+  //! @{
+  //! Compute the strange form factor F3Vs for the input interaction
+  inline virtual double F3Vs(const Interaction* /*interaction*/)
+    const { return 0.; }
+
+  //! Compute the strange form factor F3As for the input interaction
+  inline virtual double F3As(const Interaction* /*interaction*/)
+    const { return 0.; }
+  //! @}
+
+protected:
+  NCELStrangeFormFactorsModelI();
+  NCELStrangeFormFactorsModelI( std::string name );
+  NCELStrangeFormFactorsModelI( std::string name, std::string config );
+};
+
+} // genie namespace
+#endif // _NCEL_STRANGE_FORM_FACTORS_MODEL_I_H_

From fa7f40ee0cc369291f3f050458e7bf60eeb6de73 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Tue, 25 Feb 2020 20:44:58 -0600
Subject: [PATCH 27/36] Add dsigma/dQ^2 calculation to UnifiedQELPXSec for
 testing purposes

---
 .../QuasiElastic/XSection/UnifiedQELPXSec.cxx | 144 ++++++++++++++++++
 .../QuasiElastic/XSection/UnifiedQELPXSec.h   |   1 +
 2 files changed, 145 insertions(+)

diff --git a/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
index ab45a5d08..9c8a5df38 100644
--- a/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.cxx
@@ -34,6 +34,7 @@
 #include "Framework/Utils/KineUtils.h"
 #include "Framework/Utils/PrintUtils.h"
 #include "Physics/NuclearState/NuclearModelI.h"
+#include "Physics/NuclearState/NuclearUtils.h"
 
 using namespace genie;
 using namespace genie::constants;
@@ -64,6 +65,8 @@ double UnifiedQELPXSec::XSec(const Interaction* interaction,
   if ( !this->ValidProcess(interaction) ) return 0.;
   if ( !this->ValidKinematics(interaction) ) return 0.;
 
+  if ( kps == kPSQ2fE ) return this->FreeNucXSec( interaction, kps );
+
   // Get kinematics and init-state parameters
   const Kinematics&   kinematics = interaction->Kine();
   const InitialState& init_state = interaction->InitState();
@@ -285,3 +288,144 @@ void UnifiedQELPXSec::LoadConfig(void)
     algf->GetAlgorithm(pbID) );
   assert( fPauliBlocker );
 }
+//____________________________________________________________________________
+double UnifiedQELPXSec::FreeNucXSec(const Interaction* interaction,
+  KinePhaseSpace_t kps) const
+{
+  // This cross section calculation works in the kPSQ2fE phase space
+  // and is intended for direct tests against other QEL cross section
+  // models using free nucleon targets.
+
+  // Get kinematics and init-state parameters
+  const Kinematics&   kinematics = interaction->Kine();
+  const InitialState& init_state = interaction->InitState();
+  const Target& target = init_state.Tgt();
+
+  // Work in the rest frame of the initial struck nucleon
+  TLorentzVector* temp_probeP4 = init_state.GetProbeP4( kRfHitNucRest );
+  TLorentzVector probeP4 = *temp_probeP4;
+  delete temp_probeP4;
+  double E_probe = probeP4.E();
+  double p_probe = probeP4.P();
+  double m_probe2 = probeP4.M2();
+
+  // Check that we are above threshold for the reaction using Mandelstam s
+  double sqrt_s = init_state.CMEnergy();
+  double ml = interaction->FSPrimLepton()->Mass();
+  double W = interaction->RecoilNucleon()->Mass();
+  if ( sqrt_s < W + ml ) return 0.;
+
+  // Hit nucleon mass (may be off-shell)
+  double M = target.HitNucP4().M();
+  // 4-momentum of initial hit nucleon in its rest frame
+  // TODO: think more about bound nucleons here
+  TLorentzVector p4Ni(0., 0., 0., M);
+
+  // Use Q^2 to compute the full 4-momenta needed for the tensor contraction
+  double Q2 = kinematics.Q2();
+
+  // In the hit nucleon rest frame, we can compute the energy transfer easily
+  // from Q^2
+  double q0 = ( Q2 + W*W - M*M ) / ( 2. * M );
+
+  // Final lepton total energy and momentum
+  double El = E_probe - q0;
+  double pl = std::sqrt( std::max(0., El*El - ml*ml) );
+
+  // Also compute the scattering cosine in the hit nucleon rest frame
+  // using Q^2
+  double cos_theta_l = ( 2.*E_probe*El - Q2 - m_probe2 - ml*ml )
+    / ( 2. * p_probe * pl );
+  double theta_l = std::acos( cos_theta_l );
+
+  // The cross section is invariant with respect to the azimuthal angle
+  // of the outgoing lepton, so just pick zero for simplicity
+  double phi_l = 0.;
+
+  // Build the final lepton 4-momentum and 4-momentum transfer
+  TLorentzVector p4l(0., 0., pl, El);
+  p4l.SetTheta( theta_l );
+  p4l.SetPhi( phi_l );
+
+  TLorentzVector qP4 = probeP4 - p4l;
+
+  // Start xsec calculation with overall phase space factor and
+  // scaling factor from XML
+  double xsec = fXSecScale / ( 64. * kPi * std::pow(M * p_probe, 2) );
+
+  // Get the correct couplings and form factors model for the current
+  // interaction
+  // TODO: reduce code duplication here
+  double coupling_factor = 1.;
+  const genie::ProcessInfo& proc_info = interaction->ProcInfo();
+  if ( proc_info.IsWeakCC() ) {
+    coupling_factor = kGF2 * fCos8c2 / 2.;
+    fFormFactors.SetModel( fCCFormFactorsModel );
+  }
+  else if ( proc_info.IsWeakNC() ) {
+    coupling_factor = kGF2 / 2.;
+    fFormFactors.SetModel( fNCFormFactorsModel );
+  }
+  else if ( proc_info.IsEM() ) {
+    // Lorentz-Heaviside natural units: e^4 = 16 * kPi^2 * kAem2
+    coupling_factor = 16. * kPi * kPi * kAem2 / ( Q2*Q2 );
+    fFormFactors.SetModel( fEMFormFactorsModel );
+  }
+  else {
+    LOG("UnifiedQELPXSec", pERROR) << "Unrecognized process type encountered"
+      << " in genie::CBFSpecFuncQELPXSec::XSec()";
+    return 0.;
+  }
+
+  // Apply the coupling factor to the differential cross section
+  xsec *= coupling_factor;
+
+  // Evaluate the form factors
+  fFormFactors.Calculate( interaction );
+
+  // Compute the tensor contraction
+  InteractionType_t type = interaction->ProcInfo().InteractionTypeId();
+  int hit_nuc_pdg = target.HitNucPdg();
+
+  LeptonTensor L_munu( probeP4, p4l, init_state.ProbePdg(), type );
+
+  FreeNucleonTensor ATilde_munu( p4Ni, qP4, fFormFactors.F1V(),
+    fFormFactors.xiF2V(), fFormFactors.F3V(), fFormFactors.FA(),
+    fFormFactors.Fp(), fFormFactors.F3A(), type, hit_nuc_pdg );
+
+  std::complex<double> contraction = L_munu * ATilde_munu;
+
+  if ( std::abs(contraction.imag()) > kASmallNum ) {
+    LOG("UnifiedQELPXSec", pWARN) << "Tensor contraction has nonvanishing"
+      << " imaginary part!";
+  }
+
+  // Apply the tensor contraction to the cross section
+  xsec *= contraction.real();
+
+  // Check whether variable transformation is needed
+  if ( kps != kPSQ2fE ) {
+    // Compute the appropriate Jacobian for transformation to the requested
+    // phase space
+    double J = utils::kinematics::Jacobian(interaction, kPSQ2fE, kps);
+    xsec *= J;
+  }
+
+  // If requested return the free nucleon xsec even for input nuclear tgt
+  if ( interaction->TestBit(kIAssumeFreeNucleon) ) return xsec;
+
+  // Compute nuclear suppression factor
+  // (R(Q2) is adapted from NeuGEN - see comments therein)
+  double R = nuclear::NuclQELXSecSuppression("Default", 0.5, interaction);
+
+  // Number of scattering centers in the target
+  int NNucl = pdg::IsProton(hit_nuc_pdg) ? target.Z() : target.N();
+
+  LOG("UnifiedQELPXSec", pDEBUG) << "Nuclear suppression factor R(Q2) = "
+    << R << ", NNucl = " << NNucl;
+
+  // Compute nuclear cross section
+  xsec *= ( R * NNucl );
+
+  return xsec;
+}
diff --git a/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h
index 43a1b4366..0170e907d 100644
--- a/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h
+++ b/src/Physics/QuasiElastic/XSection/UnifiedQELPXSec.h
@@ -59,6 +59,7 @@ class UnifiedQELPXSec : public XSecAlgorithmI {
 
 private:
   void LoadConfig (void);
+  double FreeNucXSec(const Interaction* interaction, KinePhaseSpace_t kps) const;
 
   const QELFormFactorsModelI* fCCFormFactorsModel;
   const QELFormFactorsModelI* fNCFormFactorsModel;

From 6a755964b897ade4dac523ded0f28bdfa73195d7 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Tue, 25 Feb 2020 21:53:52 -0600
Subject: [PATCH 28/36] Switch to using the value of "QEL-Mv" from
 CommonParam.xml instead of a separately-configured value in the
 DipoleELFormFactorsModel and BBA03ELFormFactorsModel classes.

---
 config/AhrensNCELPXSec.xml                    |  4 +--
 config/BBA03ELFormFactorsModel.xml            |  7 ++---
 config/DipoleELFormFactorsModel.xml           |  8 ++----
 config/N19_00a/CommonParam.xml                |  4 +--
 config/N19_00a/DipoleELFormFactorsModel.xml   | 27 -------------------
 .../XSection/BBA03ELFormFactorsModel.cxx      |  2 +-
 .../XSection/DipoleELFormFactorsModel.cxx     |  2 +-
 7 files changed, 10 insertions(+), 44 deletions(-)
 delete mode 100644 config/N19_00a/DipoleELFormFactorsModel.xml

diff --git a/config/AhrensNCELPXSec.xml b/config/AhrensNCELPXSec.xml
index f820c1ed1..92bd05002 100644
--- a/config/AhrensNCELPXSec.xml
+++ b/config/AhrensNCELPXSec.xml
@@ -9,8 +9,8 @@ Configurable Parameters:
 ..........................................................................................
 Name             Type     Optional   Comment                     Default
 ..........................................................................................
-QEL-Ma           double   No         Axial Mass                  ComomnParam[QuasiElastic]
-QEL-Mv           double   No         Vector Mass                 ComomnParam[QuasiElastic]
+QEL-Ma           double   No         Axial Mass                  CommonParam[QuasiElastic]
+QEL-Mv           double   No         Vector Mass                 CommonParam[QuasiElastic]
 EL-Axial-Eta     double   No         Strange Axial form factor   
 QEL-Fa0          double   No         Fa(q2=0)                    CommonParam[QuasiElastic]
 AnomMagnMoment-P double   No         p Anomalous Magn Moment     CommonParam[MagnMoments]
diff --git a/config/BBA03ELFormFactorsModel.xml b/config/BBA03ELFormFactorsModel.xml
index 2b1349c05..354570638 100644
--- a/config/BBA03ELFormFactorsModel.xml
+++ b/config/BBA03ELFormFactorsModel.xml
@@ -9,7 +9,7 @@ Configurable Parameters:
 .........................................................................................
 Name               Type    Optional   Comment                      Default
 .........................................................................................
-EL-Mv              double  No         Vector Mass                  
+QEL-Mv             double  No         Vector Mass                  CommonParam[QuasiElastic]
 AnomMagnMoment-P   double  No         p Anomalous Magn Moment      CommonParam[MagnMoments]
 AnomMagnMoment-N   double  No         n Anomalous Magn Moment      CommonParam[MagnMoments]
 Gep-a2             double  No         BBA2003 fit param for Gep    bba2003::kGep_a2
@@ -38,9 +38,7 @@ Q2Max              double  No         Q2>Q2max :Gep/Gmp is const   bba2003::kQ2M
 
   <param_set name="Default"> 
 
-    <param type="string" name="CommonParam"> MagnMoments  </param> 
-
-    <param type="double" name="EL-Mv">  0.840  </param> 
+    <param type="string" name="CommonParam"> QuasiElastic,MagnMoments </param>
 
      <!-- 
 	  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -75,4 +73,3 @@ Q2Max              double  No         Q2>Q2max :Gep/Gmp is const   bba2003::kQ2M
   </param_set>
 
 </alg_conf>
-
diff --git a/config/DipoleELFormFactorsModel.xml b/config/DipoleELFormFactorsModel.xml
index 8bb77d6a6..6fb1f29f4 100644
--- a/config/DipoleELFormFactorsModel.xml
+++ b/config/DipoleELFormFactorsModel.xml
@@ -9,18 +9,14 @@ Algorithm Configurable Parameters:
 .........................................................................................
 Name                  Type    Optional   Comment                    Default
 .........................................................................................
-EL-Mv                 double  No         Vector Mass                
+QEL-Mv                double  No         Vector Mass                CommonParam[QuasiElastic]
 AnomMagnMoment-P      double  No         p Anomalous Magn Moment    CommonParam[MagnMoments]
 AnomMagnMoment-N      double  No         n Anomalous Magn Moment    CommonParam[MagnMoments]
 
 -->
 
   <param_set name="Default"> 
-    <param type="string" name="CommonParam"> MagnMoments  </param>
-
-    
-
+    <param type="string" name="CommonParam"> QuasiElastic,MagnMoments </param>
   </param_set>
 
 </alg_conf>
-
diff --git a/config/N19_00a/CommonParam.xml b/config/N19_00a/CommonParam.xml
index b3670769a..9e1b82bf1 100644
--- a/config/N19_00a/CommonParam.xml
+++ b/config/N19_00a/CommonParam.xml
@@ -237,8 +237,8 @@ Or changing the name of this parameter set
 	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 	Axial and vector masses for quasi-elastic scattering
     -->
-    <param type="double" name="QEL-Ma"> 0.990 </param>
-    <param type="double" name="QEL-Mv"> 0.840 </param>
+    <param type="double" name="QEL-Ma"> 1.0 </param>
+    <param type="double" name="QEL-Mv"> 0.69513 </param>
 
   </param_set>
 
diff --git a/config/N19_00a/DipoleELFormFactorsModel.xml b/config/N19_00a/DipoleELFormFactorsModel.xml
deleted file mode 100644
index 033e499a2..000000000
--- a/config/N19_00a/DipoleELFormFactorsModel.xml
+++ /dev/null
@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="ISO-8859-1"?>
-
-<alg_conf>
-
-<!--
-Configuration sets for the Dipole elastic form factors model.
-
-Algorithm Configurable Parameters:
-.........................................................................................
-Name                  Type    Optional   Comment                    Default
-.........................................................................................
-EL-Mv                 double  No         Vector Mass                
-AnomMagnMoment-P      double  No         p Anomalous Magn Moment    CommonParam[MagnMoments]
-AnomMagnMoment-N      double  No         n Anomalous Magn Moment    CommonParam[MagnMoments]
-
--->
-
-  <param_set name="Default">
-    <param type="string" name="CommonParam"> MagnMoments  </param>
-    <param type="double" name="EL-Mv"> 0.69513 </param>
-
-    
-
-  </param_set>
-
-</alg_conf>
-
diff --git a/src/Physics/QuasiElastic/XSection/BBA03ELFormFactorsModel.cxx b/src/Physics/QuasiElastic/XSection/BBA03ELFormFactorsModel.cxx
index 12bb4e997..81df31c16 100644
--- a/src/Physics/QuasiElastic/XSection/BBA03ELFormFactorsModel.cxx
+++ b/src/Physics/QuasiElastic/XSection/BBA03ELFormFactorsModel.cxx
@@ -129,7 +129,7 @@ void BBA03ELFormFactorsModel::LoadConfig(void)
   GetParam( "BBA03-Q2Max", fQ2Max ) ;
 
   // vector mass
-  GetParam( "EL-Mv",fMv ) ;
+  GetParam( "QEL-Mv", fMv ) ;
   fMv2 = TMath::Power(fMv,2);
 
   // anomalous magnetic moments
diff --git a/src/Physics/QuasiElastic/XSection/DipoleELFormFactorsModel.cxx b/src/Physics/QuasiElastic/XSection/DipoleELFormFactorsModel.cxx
index 5c2ace484..32a09fc31 100644
--- a/src/Physics/QuasiElastic/XSection/DipoleELFormFactorsModel.cxx
+++ b/src/Physics/QuasiElastic/XSection/DipoleELFormFactorsModel.cxx
@@ -85,7 +85,7 @@ void DipoleELFormFactorsModel::Configure(string param_set)
 void DipoleELFormFactorsModel::LoadConfig(void)
 {
   // vector mass
-  GetParam( "EL-Mv", fMv ) ;
+  GetParam( "QEL-Mv", fMv );
   fMv2 = TMath::Power(fMv,2);
 
   // anomalous magnetic moments

From 44cebe8ff25c6c44bdb3f7c005dc0e17bc305b5f Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Tue, 25 Feb 2020 23:35:43 -0600
Subject: [PATCH 29/36] The "fix" proposed in GENIE docDB #133 is incorrect.
 The original Jacobian was computed correctly in the hit nucleon rest frame.
 The proposed new Jacobian, on the other hand, is only valid in a frame (e.g.,
 the CM frame) wherein the final lepton energy is independent of scattering
 angle.

Revert "bug fix in J for the Rosenbluth xsection"
This reverts commit fb262552fbec2260fa3b034519fc2f4e7b03cfb2.
---
 src/Physics/QuasiElastic/XSection/RosenbluthPXSec.cxx | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/Physics/QuasiElastic/XSection/RosenbluthPXSec.cxx b/src/Physics/QuasiElastic/XSection/RosenbluthPXSec.cxx
index efae4b79e..573813af4 100644
--- a/src/Physics/QuasiElastic/XSection/RosenbluthPXSec.cxx
+++ b/src/Physics/QuasiElastic/XSection/RosenbluthPXSec.cxx
@@ -91,7 +91,7 @@ double RosenbluthPXSec::XSec(
 
   // Calculate the scattered lepton energy
   double Ep  = E / (1. + 2.*(E/M)*sin2_halftheta);
-  //double Ep2 = Ep*Ep; // unused variable
+  double Ep2 = Ep*Ep;
 
   // Calculate the Mott cross section dsigma/dOmega
   double xsec_mott = (0.25 * kAem2 * Ep / E3) * (cos2_halftheta/sin4_halftheta);
@@ -100,7 +100,7 @@ double RosenbluthPXSec::XSec(
   double xsec = xsec_mott * (Ge2 + (tau/epsilon)*Gm2) / (1+tau);
 
   // Convert dsigma/dOmega --> dsigma/dQ2
-  xsec *= (kPi/(Ep*E));
+  xsec *= (kPi/Ep2);
 
   // The algorithm computes dxsec/dQ2
   // Check whether variable tranformation is needed

From 976133d45e55c0f78f3e0e6ff8f1d5b4b45bd5f2 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 26 Feb 2020 00:23:16 -0600
Subject: [PATCH 30/36] Eliminate an unused variable warning in
 AhrensNCELStrangeFF.cxx

---
 src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx b/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx
index 50b0b184b..7faf4e85a 100644
--- a/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx
+++ b/src/Physics/QuasiElastic/XSection/AhrensNCELStrangeFF.cxx
@@ -61,10 +61,6 @@ double AhrensNCELStrangeFF::FAs(const Interaction* interaction) const
   fAxFF.Calculate( interaction );
   double FA_CC = fAxFF.FA();
 
-  int sign = 1;
-  int hit_nuc_pdg = interaction->InitState().Tgt().HitNucPdg();
-  if ( pdg::IsNeutron(hit_nuc_pdg) ) sign = -1;
-
   // Compute the strange axial NC form factor
   double FAs = -1. * fEta * FA_CC;
   return FAs;

From 5cad55b88c7c0b38c74fbcb9c18f5fdc16e0d7ee Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 26 Feb 2020 00:51:01 -0600
Subject: [PATCH 31/36] Make FermiMover compatible with the SpectralFunc
 nuclear model

---
 src/Physics/NuclearState/FermiMover.cxx       | 66 ++++++++++++-------
 .../EventGen/QELEventGenerator.cxx            |  3 +
 2 files changed, 47 insertions(+), 22 deletions(-)

diff --git a/src/Physics/NuclearState/FermiMover.cxx b/src/Physics/NuclearState/FermiMover.cxx
index a9e65ab6b..12fb0f9c5 100644
--- a/src/Physics/NuclearState/FermiMover.cxx
+++ b/src/Physics/NuclearState/FermiMover.cxx
@@ -2,7 +2,7 @@
 /*
  Copyright (c) 2003-2020, The GENIE Collaboration
  For the full text of the license visit http://copyright.genie-mc.org
- 
+
 
  Costas Andreopoulos <constantinos.andreopoulos \at cern.ch>
  University of Liverpool & STFC Rutherford Appleton Laboratory - October 08, 2004
@@ -168,28 +168,50 @@ void FermiMover::KickHitNucleon(GHepRecord * evrec) const
   // Do default Fermi Moving
   } else  {
     if (!fKeepNuclOnMassShell) {
-      //-- compute A,Z for final state nucleus & get its PDG code
-      int nucleon_pdgc = nucleon->Pdg();
-      bool is_p  = pdg::IsProton(nucleon_pdgc);
-      int Z = (is_p) ? nucleus->Z()-1 : nucleus->Z();
-      int A = nucleus->A() - 1;
-
-      TParticlePDG * fnucleus = 0;
-      int ipdgc = pdg::IonPdgCode(A, Z);
-      fnucleus = PDGLibrary::Instance()->Find(ipdgc);
-      if(!fnucleus) {
-        LOG("FermiMover", pFATAL)
-              << "No particle with [A = " << A << ", Z = " << Z
-              << ", pdgc = " << ipdgc << "] in PDGLibrary!";
-        exit(1);
-      }
-      //-- compute the energy of the struck (off the mass-shell) nucleus
 
-      double Mf  = fnucleus -> Mass(); // remnant nucleus mass
-      double Mi  = nucleus  -> Mass(); // initial nucleus mass
-
-      EN = Mi - TMath::Sqrt(pF2 + Mf*Mf);
-    } else {
+      if ( fNuclModel->ModelType(*tgt) == kNucmSpectralFunc ) {
+        // If we're using the SpectralFunc nuclear model, use it to determine a
+        // variable off-shell total energy for the initial hit nucleon
+        // See also the BindHitNucleon() function in
+        // Physics/QuasiElastic/XSection/QELUtils.cxx
+        double mNi = tgt->HitNucMass(); // On-shell initial hit nucleon mass
+        double Mi = tgt->Mass(); // Initial mass of the nuclear target
+        double Mf = std::sqrt( std::max(0., std::pow(Mi + w - mNi, 2) - p3.Mag2()) );
+        // The (lab-frame) off-shell initial nucleon energy is the difference
+        // between the lab frame total energies of the initial and remnant nuclei
+        EN = Mi - std::sqrt( Mf*Mf + p3.Mag2() );
+      }
+      else {
+        // Otherwise, assume that the spectator nuclear remnant is left in its
+        // ground state.
+
+        // TODO: revisit this assumption, as was done for QELEventGenerator
+        // for the v3.0.4 release
+
+        //-- compute A,Z for final state nucleus & get its PDG code
+        int nucleon_pdgc = nucleon->Pdg();
+        bool is_p  = pdg::IsProton(nucleon_pdgc);
+        int Z = (is_p) ? nucleus->Z()-1 : nucleus->Z();
+        int A = nucleus->A() - 1;
+
+        TParticlePDG * fnucleus = 0;
+        int ipdgc = pdg::IonPdgCode(A, Z);
+        fnucleus = PDGLibrary::Instance()->Find(ipdgc);
+        if(!fnucleus) {
+          LOG("FermiMover", pFATAL)
+                << "No particle with [A = " << A << ", Z = " << Z
+                << ", pdgc = " << ipdgc << "] in PDGLibrary!";
+          exit(1);
+        }
+        //-- compute the energy of the struck (off the mass-shell) nucleus
+
+        double Mf  = fnucleus -> Mass(); // remnant nucleus mass
+        double Mi  = nucleus  -> Mass(); // initial nucleus mass
+
+        EN = Mi - TMath::Sqrt(pF2 + Mf*Mf);
+      }
+    }
+    else {
       double MN  = nucleon->Mass();
       double MN2 = TMath::Power(MN,2);
       EN = TMath::Sqrt(MN2+pF2);
diff --git a/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx b/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
index 593aee673..e8d007e26 100644
--- a/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
+++ b/src/Physics/QuasiElastic/EventGen/QELEventGenerator.cxx
@@ -3,6 +3,9 @@
  Copyright (c) 2003-2020, The GENIE Collaboration
  For the full text of the license visit http://copyright.genie-mc.org
 
+ Significant revisions by Steven Gardiner <gardiner \at fnal.gov>
+ Fermi National Accelerator Laboratory
+
  New QE event generator written by:
  Andy Furmanski
  Manchester

From 3fd126c53f4c62bdc7d0b4d687624c995f07490b Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Wed, 26 Feb 2020 01:45:28 -0600
Subject: [PATCH 32/36] Improve robustness of a check for the SpectralFunc
 nuclear model in genie::utils::BindHitNucleon(). Previously the check would
 fail when using this model via a NuclearModelMap instance.

---
 src/Physics/QuasiElastic/XSection/QELUtils.cxx | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index 19abf267b..693168a15 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -290,7 +290,7 @@ void genie::utils::BindHitNucleon(genie::Interaction& interaction,
     // model, then it implies a certain value for the final
     // nucleus mass
     if ( hitNucleonBindingMode == genie::kUseNuclearModel ) {
-      if ( nucl_model.Id().Name() != "genie::SpectralFunc" ) {
+      if ( nucl_model.ModelType(*tgt) != kNucmSpectralFunc ) {
         Eb = nucl_model.RemovalEnergy();
         // For all nuclear models except SpectralFunc, this equation is the
         // definition that we assume for the "removal energy" (Eb). It matches

From 1085d26395c2846926dd7270e575ef82515a909b Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Thu, 27 Feb 2020 12:07:57 -0600
Subject: [PATCH 33/36] Correct the value of QEL-Mv set for the temporary
 N19_00a_00_000 tune used to test the new SpectralFunc implementation. In
 Noemi's Fortran code, the value of Mv^2 is set instead of Mv.

---
 config/N19_00a/CommonParam.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/config/N19_00a/CommonParam.xml b/config/N19_00a/CommonParam.xml
index 9e1b82bf1..d90fb2487 100644
--- a/config/N19_00a/CommonParam.xml
+++ b/config/N19_00a/CommonParam.xml
@@ -238,7 +238,7 @@ Or changing the name of this parameter set
 	Axial and vector masses for quasi-elastic scattering
     -->
     <param type="double" name="QEL-Ma"> 1.0 </param>
-    <param type="double" name="QEL-Mv"> 0.69513 </param>
+    <param type="double" name="QEL-Mv"> 0.83374457 </param>
 
   </param_set>
 

From 662305057d4fcc165a3be81e1d5c404e2a4bd30e Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Mon, 26 Oct 2020 00:08:35 -0500
Subject: [PATCH 34/36] Fix minor issue related to overall normalization of the
 spectral function histograms. Getting this right is helpful for testing.

---
 config/SpectralFunc.xml                   |  2 ++
 src/Physics/NuclearState/SpectralFunc.cxx | 13 ++++++++++---
 src/Physics/NuclearState/SpectralFunc.h   |  5 +++--
 3 files changed, 15 insertions(+), 5 deletions(-)

diff --git a/config/SpectralFunc.xml b/config/SpectralFunc.xml
index b4ece6787..029aa8840 100644
--- a/config/SpectralFunc.xml
+++ b/config/SpectralFunc.xml
@@ -15,6 +15,8 @@ FermiMomentumTable      string   No         Table of Fermi momentum (kF) constan
 
   <param_set name="Default"> 
 
+    <param type="string" name="CommonParam"> FermiGas </param>
+
     <!-- The data file path may be specified relative to the GENIE root folder or
        as an absolute path -->
     <param type="string" name="DataPathType"> relative </param>
diff --git a/src/Physics/NuclearState/SpectralFunc.cxx b/src/Physics/NuclearState/SpectralFunc.cxx
index e5133a122..e586d0182 100644
--- a/src/Physics/NuclearState/SpectralFunc.cxx
+++ b/src/Physics/NuclearState/SpectralFunc.cxx
@@ -220,7 +220,7 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
   // Prepend the data path to the file name
   data_filename = fDataPath + data_filename;
 
-  TH2D* sf_hist = this->LoadSFDataFile(data_filename);
+  TH2D* sf_hist = this->LoadSFDataFile( data_filename, t.Z() );
 
   LOG("SpectralFunc", pNOTICE) << "Loaded spectral function data"
     " for target with PDG code " << target_pdg << " from the file "
@@ -238,7 +238,8 @@ TH2D* SpectralFunc::SelectSpectralFunction(const Target& t) const
   return sf_hist;
 }
 //____________________________________________________________________________
-TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
+TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name,
+  int targetZ ) const
 {
   int num_E_bins, num_p_bins;
   double p_min, p_max, E_min, E_max;
@@ -263,7 +264,6 @@ TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
 
   // The input files use MeV while GENIE uses GeV, so make the
   // change to GENIE units now.
-  // change now
   E_min *= genie::units::MeV;
   E_max *= genie::units::MeV;
 
@@ -293,6 +293,13 @@ TH2D* SpectralFunc::LoadSFDataFile(const std::string& full_file_name) const
       // Convert from MeV to GeV
       E *= genie::units::MeV;
 
+      // Convert from MeV^(-4) to GeV^(-4)
+      prob_density *= std::pow( genie::units::MeV, -4 );
+
+      // Remove the normalization factor of Z from the values tabulated in the
+      // file
+      prob_density /= targetZ;
+
       // Convert bin contents from probability density to probability
       // mass for easier sampling
       TAxis* p_axis = sf_hist->GetXaxis();
diff --git a/src/Physics/NuclearState/SpectralFunc.h b/src/Physics/NuclearState/SpectralFunc.h
index b53d24fec..d9d912d3d 100644
--- a/src/Physics/NuclearState/SpectralFunc.h
+++ b/src/Physics/NuclearState/SpectralFunc.h
@@ -57,11 +57,12 @@ class SpectralFunc : public NuclearModelI {
   void Configure (const Registry & config);
   void Configure (string config);
 
+  TH2D* SelectSpectralFunction (const Target& target) const;
+
  protected:
   void       LoadConfig             (void);
   TGraph2D*  Convert2Graph          (TNtupleD& data) const;
-  TH2D*      SelectSpectralFunction (const Target& target) const;
-  TH2D* LoadSFDataFile(const std::string& full_file_name) const;
+  TH2D* LoadSFDataFile( const std::string& full_file_name, int targetZ ) const;
 
   /// The path to the folder containing the spectral function data files
   std::string fDataPath;

From 53f8971d64d9a1b2fcf0c4035a07aca5a50da166 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Mon, 26 Oct 2020 01:23:03 -0500
Subject: [PATCH 35/36] Add a QE utility function for testing the new
 UnifiedQELPXSec model

---
 .../QuasiElastic/XSection/QELUtils.cxx        | 131 ++++++++++++++++++
 src/Physics/QuasiElastic/XSection/QELUtils.h  |   4 +
 2 files changed, 135 insertions(+)

diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.cxx b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
index 693168a15..9234669d0 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.cxx
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.cxx
@@ -345,3 +345,134 @@ void genie::utils::BindHitNucleon(genie::Interaction& interaction,
   p4Ni->SetE( ENi );
 
 }
+
+// Assumes that the probe 4-momentum and struck nucleon PDG code are already
+// set in the input interaction.
+// TODO: adjust to avoid assuming that the probe is traveling along the +z
+// direction
+double genie::utils::ComputeTestQELPXSec(genie::Interaction* interaction,
+  const genie::XSecAlgorithmI* xsec_model, double omega, double ctl,
+  double phiLep, double phiNi, double pNi, double Eremove)
+{
+  // Get the probe 4-momentum
+  TLorentzVector* tempProbeP4 = interaction->InitState().GetProbeP4(
+    genie::kRfLab );
+  TLorentzVector nuP4 = *tempProbeP4;
+  delete tempProbeP4;
+
+  // Prepare the outgoing lepton 4-momentum
+  double ml = interaction->FSPrimLepton()->Mass();
+
+  double Ev = nuP4.E();
+  double El = Ev - omega;
+  double pl = std::sqrt( std::max(0., El*El - ml*ml) );
+  if ( El < ml ) return 0.;
+
+  double stl = std::sqrt( std::max(0., 1. - ctl*ctl) );
+  TLorentzVector lP4( std::cos(phiLep)*stl*pl,
+    std::sin(phiLep)*stl*pl, ctl*pl, El );
+
+  // Get the 4-momentum transfer
+  TLorentzVector qP4 = nuP4 - lP4;
+
+  // Get the cosine between the initial nucleon 3-momentum and the 3-momentum
+  // transfer
+
+  // On-shell mass of initial struck nucleon
+  double mNi = interaction->InitState().Tgt().HitNucMass();
+  // Off-shell total energy of initial struck nucleon
+  double ENi = mNi - Eremove;
+
+  // Look up the (on-shell) mass of the final nucleon
+  double mNf = interaction->RecoilNucleon()->Mass();
+  // Final nucleon total energy
+  double ENf = ENi + omega;
+  if ( ENf < mNf ) return 0.;
+
+  // Final nucleon 3-momentum
+  double pNf = std::sqrt( std::max(0., ENf*ENf - mNf*mNf) );
+
+  // 3-momentum transfer
+  double qMag = qP4.Vect().Mag();
+
+  double pCos = ( pNf*pNf - pNi*pNi - qMag*qMag ) / ( 2.*pNi*qMag );
+  if ( std::abs(pCos) > 1. ) return 0.;
+
+  double pSin = std::sqrt( std::max(0., 1. - pCos*pCos) );
+
+  // Set up the initial struck nucleon 3-momentum in a frame where the
+  // 3-momentum transfer points along +z
+  TVector3 p3Ni( std::cos(phiNi)*pSin*pNi, std::sin(phiNi)*pSin*pNi,
+    pCos*pNi );
+
+  // Find the rotation angle needed to put the 3-momentum transfer along z
+  TVector3 zvec(0.0, 0.0, 1.0);
+  TVector3 q3Vec = qP4.Vect();
+  TVector3 rot = ( q3Vec.Cross(zvec) ).Unit(); // Vector to rotate about
+  // Angle between the z direction and q
+  double angle = zvec.Angle( q3Vec );
+
+  // Handle the edge case where q3Vec is along -z, so the
+  // cross product above vanishes
+  if ( q3Vec.Perp() == 0. && q3Vec.Z() < 0. ) {
+    rot = TVector3(0., 1., 0.);
+    angle = genie::constants::kPi;
+  }
+
+  // We want to rotate z to q3Vec instead of q3Vec to z, so
+  // make the rotation angle negative to account for this.
+  angle *= -1.;
+
+  // Rotate if the rotation vector is not approximately zero
+  if ( rot.Mag() >= genie::controls::kASmallNum ) {
+    p3Ni.Rotate( angle, rot );
+  }
+
+  // Build the initial struck nucleon 4-momentum
+  TLorentzVector p4Ni( p3Ni, ENi );
+
+  // Use it and the 4-momentum transfer to get the final nucleon 4-momentum
+  TLorentzVector p4Nf = p4Ni + qP4;
+
+  // Set the needed 4-momenta in the input interaction
+  interaction->InitState().TgtPtr()->SetHitNucP4( p4Ni );
+  interaction->KinePtr()->SetFSLeptonP4( lP4 );
+  interaction->KinePtr()->SetHadSystP4( p4Nf );
+
+  // A very high-momentum bound nucleon (which is far off the mass shell)
+  // can have a momentum greater than its total energy. This leads to numerical
+  // issues (NaNs) since the invariant mass of the nucleon becomes imaginary.
+  // In such cases, just return zero to avoid trouble.
+  if ( interaction->InitState().Tgt().HitNucP4().M() <= 0. ) return 0.;
+
+  // Mandelstam s for the probe/hit nucleon system
+  double s = std::pow( interaction->InitState().CMEnergy(), 2 );
+
+  // Return a differential cross section of zero if we're below threshold
+  if ( std::sqrt(s) < ml + mNf ) return 0.;
+
+  // Check that Q^2 is within the allowed range
+  double Q2 = -1 * qP4.Mag2();
+
+  // Check the Q2 range. If we're outside of it, don't bother
+  // with the rest of the calculation.
+  Range1D_t Q2lim = interaction->PhaseSpace().Q2Lim();
+  if ( Q2 < Q2lim.min || Q2 > Q2lim.max ) return 0.;
+
+  // Set Q^2 in the input interaction
+  interaction->KinePtr()->SetQ2( Q2 );
+
+  // Compute the QE cross section for the current kinematics
+  double xsec = xsec_model->XSec(interaction, genie::kPSQELEvGen);
+
+  // Adjust some factors for the testing phase space (which differs from
+  // kPSQELEvGen)
+  double delta_sol = EnergyDeltaFunctionSolutionQEL( *interaction );
+
+  double factor = lP4.E() * lP4.P() * p4Nf.E() * p4Ni.P()
+    / ( qMag * delta_sol );
+
+  xsec *= factor;
+
+  return xsec;
+}
diff --git a/src/Physics/QuasiElastic/XSection/QELUtils.h b/src/Physics/QuasiElastic/XSection/QELUtils.h
index 537802366..bb2844bb7 100644
--- a/src/Physics/QuasiElastic/XSection/QELUtils.h
+++ b/src/Physics/QuasiElastic/XSection/QELUtils.h
@@ -57,6 +57,10 @@ namespace genie {
 
     void BindHitNucleon(Interaction& interaction, const NuclearModelI& nucl_model,
       double& Eb, QELEvGen_BindingMode_t hitNucleonBindingMode);
+
+    double ComputeTestQELPXSec(Interaction* interaction,
+      const XSecAlgorithmI* xsec_model, double omega, double ctl,
+      double phiLep, double phiNi, double pNi, double Eremove);
   }
 }
 

From a249492b3d18ebf217bad694831e4d67f20664b3 Mon Sep 17 00:00:00 2001
From: Steven Gardiner <gardiner@fnal.gov>
Date: Mon, 26 Oct 2020 04:42:38 -0500
Subject: [PATCH 36/36] Change gA to match Noemi's value

---
 config/N19_00a/CommonParam.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/config/N19_00a/CommonParam.xml b/config/N19_00a/CommonParam.xml
index d90fb2487..2e8b5ea87 100644
--- a/config/N19_00a/CommonParam.xml
+++ b/config/N19_00a/CommonParam.xml
@@ -231,7 +231,7 @@ Or changing the name of this parameter set
 	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 	Value of axial form factor at Q2=0
     -->
-    <param type="double" name="QEL-FA0"> -1.2670 </param>
+    <param type="double" name="QEL-FA0"> -1.2694 </param>
 
     <!--
 	~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~