You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I got the error below. This is after having already run python -m spacy download en and verified that I could do spacy.load('en_core_web_sm').
OSError: [E941] Can't find model 'en'. It looks like you're trying to load a model from a shortcut, which is deprecated as of spaCy v3.0. To load the model, use its full name instead:
nlp = spacy.load("en_core_web_sm")
To Reproduce
As above.
**Environment **
OS: macOS
QuickUMLS version 1.4 (installed Feb 19 2021)
UMLS version 2019AB
Additional context
Full error message below:
OSError Traceback (most recent call last)
~/opt/anaconda3/envs/quickUMLS/lib/python3.7/site-packages/quickumls/core.py in __init__(self, quickumls_fp, overlapping_criteria, threshold, window, similarity_name, min_match_length, accepted_semtypes, verbose, keep_uppercase)
149 try:
--> 150 self.nlp = spacy.load(spacy_lang)
151 except OSError:
~/opt/anaconda3/envs/quickUMLS/lib/python3.7/site-packages/spacy/__init__.py in load(name, disable, exclude, config)
46 """
---> 47 return util.load_model(name, disable=disable, exclude=exclude, config=config)
48
~/opt/anaconda3/envs/quickUMLS/lib/python3.7/site-packages/spacy/util.py in load_model(name, vocab, disable, exclude, config)
327 if name in OLD_MODEL_SHORTCUTS:
--> 328 raise IOError(Errors.E941.format(name=name, full=OLD_MODEL_SHORTCUTS[name]))
329 raise IOError(Errors.E050.format(name=name))
OSError: [E941] Can't find model 'en'. It looks like you're trying to load a model from a shortcut, which is deprecated as of spaCy v3.0. To load the model, use its full name instead:
nlp = spacy.load("en_core_web_sm")
For more details on the available models, see the models directory: https://spacy.io/models. If you want to create a blank model, use spacy.blank: nlp = spacy.blank("en")
I had to change the SPACY_LANGUAGE_MAP dict in constants.py line 188 to map to 'en_core_web_sm' instead of 'en' to fix this error. I could have downgraded to an earlier version of spaCy instead to make this work I imagine, but v.3.0 is what was installed by default during the quickumls installation.
For spaCy 3.0, this will probably be an issue with other languages as well? So maybe the SPACY_LANGUAGE_MAP should be changed to:
Describe the bug
When I tried to initialize QuickUMLS as in the following example:
I got the error below. This is after having already run
python -m spacy download en
and verified that I could dospacy.load('en_core_web_sm')
.To Reproduce
As above.
**Environment **
Additional context
Full error message below:
I had to change the SPACY_LANGUAGE_MAP dict in constants.py line 188 to map to 'en_core_web_sm' instead of 'en' to fix this error. I could have downgraded to an earlier version of spaCy instead to make this work I imagine, but v.3.0 is what was installed by default during the quickumls installation.
For spaCy 3.0, this will probably be an issue with other languages as well? So maybe the SPACY_LANGUAGE_MAP should be changed to:
The text was updated successfully, but these errors were encountered: