tox.ini

# Tox (http://tox.testrun.org/) is a tool for running tests
# in multiple virtualenvs. This configuration file will run the
# test suite on all supported python versions. To use it, "pip install tox"
# and then run "tox" from this directory.

[tox]
envlist = manifest, readme, doc8, docs, flake8, pylint

[testenv]
passenv = CI TRAVIS TRAVIS_*
whitelist_externals =
    /bin/cat
    /bin/cp
    /bin/mkdir

[testenv:manifest]
deps = check-manifest
skip_install = true
commands = check-manifest

[testenv:readme]
commands = rst-lint README.rst
skip_install = true
deps =
    restructuredtext_lint
    pygments
    
[testenv:doc8]
basepython = python3
skip_install = true
deps =
    sphinx
    doc8
commands =
    doc8 docs/source/ README.rst

[testenv:docs]
changedir = docs
deps =
    sphinx
    sphinx_rtd_theme
commands =
    mkdir -p {envtmpdir}
    cp -r source {envtmpdir}/source
    sphinx-build -W -b html -d {envtmpdir}/build/doctrees {envtmpdir}/source {envtmpdir}/build/html
    sphinx-build -W -b coverage -d {envtmpdir}/build/doctrees {envtmpdir}/source {envtmpdir}/build/coverage
    cat {envtmpdir}/build/coverage/c.txt
    cat {envtmpdir}/build/coverage/python.txt

[testenv:flake8]
basepython = python3
skip_install = true
deps =
    flake8
    flake8-docstrings>=0.2.7
    flake8-import-order>=0.9
    pep8-naming
    flake8-colors
commands =
    flake8 src/gene_prioritization/ setup.py

[testenv:pylint]
basepython = python3
deps =
    pyflakes
    pylint
commands =
    pylint src/gene_prioritization