From 3f75b195699c04bfb1f3c85f79c056254adfad0e Mon Sep 17 00:00:00 2001 From: ga84mun Date: Wed, 13 Nov 2024 14:20:37 +0000 Subject: [PATCH] erode uses deprecated key --- spineps/phase_instance.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/spineps/phase_instance.py b/spineps/phase_instance.py index 4a1f383..1f5cb42 100755 --- a/spineps/phase_instance.py +++ b/spineps/phase_instance.py @@ -176,7 +176,7 @@ def get_corpus_coms( # # Extract Corpus region and try to find all coms naively (some skips shouldnt matter) corpus_nii = seg_nii.extract_label([Location.Vertebra_Corpus_border, Location.Vertebra_Corpus]) - corpus_nii.erode_msk_(mm=2, connectivity=2, verbose=False) + corpus_nii.erode_msk_(2, connectivity=2, verbose=False) if 1 in corpus_nii.unique() and corpus_size_cleaning > 0: corpus_nii.set_array_( clean_cc_artifacts(