Dendrite now bends, does axon also bend? #3080
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name: Unit networks | |
on: [push] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v1 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.9 | |
- uses: actions/cache@v1 | |
with : | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install MPI | |
run: | | |
sudo apt-get update | |
sudo apt-get install openmpi-bin libopenmpi-dev | |
# No longer needed to compile NEURON manually for unit test. | |
# - name: Install NEURON | |
# run: | | |
# wget https://neuron.yale.edu/ftp/neuron/versions/v7.7/7.7.2/nrn-7.7.2.x86_64-linux-py-37-36-35-27.deb | |
# sudo dpkg -i nrn-7.7.2.x86_64-linux-py-37-36-35-27.deb | |
# export PYTHONPATH=/usr/local/nrn/lib/python | |
# python -c "help('modules')" | |
# echo "PYTHONPATH=$PYTHONPATH" | |
# echo "/usr/local/nrn contains:" | |
# ls /usr/local/nrn | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt | |
pip install coverage | |
pip install wheel | |
pip install -e . # Install snudda as package on the build system. | |
- name: Run unittests and code coverage | |
run: | | |
coverage run -m unittest discover -v -s ./tests | |
coverage xml | |
- uses: codecov/codecov-action@v1 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} |