DESCRIPTION

Package: phylosamp
Type: Package
Title: Sample Size Calculations for Molecular and Phylogenetic Studies
Version: 1.0.1
Date: 2023-04-25
Authors@R: c(person("Shirlee", "Wohl", role=c("aut", "ctb"), email="swohl@scripps.edu"),
              person("Elizabeth C", "Lee", role=c("aut", "ctb"), email="elizabeth.c.lee@jhu.edu"),
              person("Lucy", "D'Agostino McGowan", role=c("aut", "ctb"), email = "lucydagostino@gmail.com", 
              comment = c(ORCID = "0000-0002-6983-2759")),
              person("John R", "Giles", role=c("aut", "ctb"), email="jrgiles@uw.edu"),
              person("Justin", "Lessler", role=c("aut", "cre"), email="jlessler@unc.edu"))
Maintainer: Justin Lessler <jlessler@unc.edu>
Description: Implements novel tools for estimating sample sizes needed for phylogenetic studies, including
    studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).
License: GPL-2
URL: https://github.com/HopkinsIDD/phylosamp
BugReports: https://github.com/HopkinsIDD/phylosamp/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Depends:
  R (>= 2.10),
  stats
Imports:
    cli,
    lifecycle,
    rlang
Suggests:
    cowplot,
    ggplot2,
    knitr,
    purrr,
    RColorBrewer,
    reshape2,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)