diff --git a/modules/transdecoder/convert_to_gtf.nf b/modules/transdecoder/convert_to_gtf.nf index 58b4a3d..659a757 100644 --- a/modules/transdecoder/convert_to_gtf.nf +++ b/modules/transdecoder/convert_to_gtf.nf @@ -3,8 +3,6 @@ process AGAT_CONVERTSPGFF2GTF { container "${ workflow.containerEngine == 'singularity' ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' : 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" - cpus params.maxCpu - memory params.maxMemory input: path gff3 diff --git a/modules/transdecoder/gtfsort.nf b/modules/transdecoder/gtfsort.nf index 5866cef..5afe860 100644 --- a/modules/transdecoder/gtfsort.nf +++ b/modules/transdecoder/gtfsort.nf @@ -5,8 +5,6 @@ process GTFSORT { 'biocontainers/gtfsort:0.2.2--h4ac6f70_0' }" publishDir "$params.outdir/transdecoder", mode: 'copy', pattern: 'novel.full.gtf' publishDir "$params.outdir/final", mode: 'copy', pattern: 'novel.full.gtf', saveAs: {filename -> 'novel.full.gtf'}, overwrite: true - cpus params.maxCpu - memory params.maxMemory input: path fixed_novel diff --git a/modules/transdecoder/transdecoder_predict.nf b/modules/transdecoder/transdecoder_predict.nf index fd0f58a..2b2f26d 100644 --- a/modules/transdecoder/transdecoder_predict.nf +++ b/modules/transdecoder/transdecoder_predict.nf @@ -4,8 +4,6 @@ process TRANSDECODER_PREDICT { 'https://depot.galaxyproject.org/singularity/transdecoder:5.5.0--pl5262hdfd78af_4' : 'quay.io/comp-bio-aging/transdecoder' }" publishDir "$params.outdir/transdecoder", mode: 'copy' - cpus params.maxCpu - memory params.maxMemory input: path novel_full_gtf