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git_to_shakemap.sh
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#!/bin/bash
# ------------------------------------------------------------
# Author : Valentino Lauciani
# Date : 06/06/2022
# ------------------------------------------------------------
#
# Import configurations
. $(dirname $0)/config.sh
### START - Functions ###
function syntax () {
echo ""
echo "Syntax:"
echo "`basename $0` [ -e <fk_event> | -r ] | -h | --help"
echo "-e by fk_event"
echo "-r real-time mode"
echo "-p profile [world|italy]"
echo ""
echo "Example with -e option: $( basename ${0} ) -e 5269671 -p world"
echo "Example with -r option: $( basename ${0} ) -r -p world"
echo ""
exit 1
}
### END - Functions ###
### START - Check parameters ###
# Check input params
IN__EVENTID=
IN__PROFILE=
IN__REALTIME=0
while getopts :e:p:rh OPTION
do
case ${OPTION} in
e)
IN__EVENTID="${OPTARG}"
;;
h)
syntax
;;
p)
IN__PROFILE="${OPTARG}"
[[ ${IN__PROFILE} == "world" || ${IN__PROFILE} == "italy" ]] || syntax
;;
r)
IN__REALTIME=1
;;
\?)
echo "Unknown option: -$OPTARG" >&2
exit 1
;;
:)
echo "Missing option argument for -$OPTARG" >&2
exit 1
;;
*)
echo "Unimplemented option: -$OPTARG" >&2
exit 1
;;
esac
done
if ((OPTIND == 1)); then
echo "No options specified"
fi
shift $(($OPTIND - 1))
if [ -z ${IN__PROFILE} ]; then
echo ""
echo "Profile, is mandatory!"
syntax
fi
#
if (( ${IN__REALTIME} == 1 )) && [ ! -z ${IN__EVENTID} ]; then
echo "Cannot use -e and -r at same time"
exit 1
fi
#
DIRSHAKEMAP4_PROFILE=${DIRSHAKEMAP4_PROFILES}/${IN__PROFILE}
if [ ! -d ${DIRSHAKEMAP4_PROFILE} ]; then
echo "The DIRSHAKEMAP4_PROFILE directory (${DIRSHAKEMAP4_PROFILE}) doesn't exist"
exit 1
fi
### END - Check parameters ###
date_start
### START - Check if the script already running ###
# make directory if not exists
if [ ! -d ${DIRLOCK} ]; then
mkdir ${DIRLOCK}
fi
if [ ! -d ${DIRTMP} ]; then
mkdir ${DIRTMP}
fi
if [ ! -d ${DIRLOG} ]; then
mkdir ${DIRLOG}
fi
LCK_FILE=${DIRLOCK}/$( basename $0 ).lck
if [ -f "${LCK_FILE}" ]; then
# The file exists so read the PID
# to see if it is still running
MYPID=`head -n 1 "${LCK_FILE}"`
TEST_RUNNING=`ps -p ${MYPID} | grep ${MYPID}`
if [ -z "${TEST_RUNNING}" ]; then
# The process is not running
# Echo current PID into lock file
echo $$ > "${LCK_FILE}"
else
echo ""
echo " The ${0} already running... [pid: ${MYPID}]"
echo ""
date_end
exit 0
fi
else
echo $$ > "${LCK_FILE}"
fi
### END - Check if the script already running ###
#
DIRSHAKEMAP4_PROFILE_DATA=${DIRSHAKEMAP4_PROFILE}/data
if [ ! -d ${DIRSHAKEMAP4_PROFILE_DATA} ]; then
mkdir ${DIRSHAKEMAP4_PROFILE_DATA}
fi
#########################################################################
if (( ${IN__REALTIME} == 1 )); then
echo_date "Run \"make_pull_from_gitlab.sh\" to get changes:"
if [ -f ${DIRTMP}/make_pull_from_gitlab.sh.log ]; then
rm ${DIRTMP}/make_pull_from_gitlab.sh.log
fi
echo ""
echo "${DIRWORK}/make_pull_from_gitlab.sh -g ${DIRGITSHAKEMAP_FOR_PULL} -d ${DIRSHAKEMAP4_PROFILE_DATA}"
${DIRWORK}/make_pull_from_gitlab.sh -g ${DIRGITSHAKEMAP_FOR_PULL} -d ${DIRSHAKEMAP4_PROFILE_DATA} 2>&1 | tee -a ${DIRTMP}/make_pull_from_gitlab.sh.log
echo_date "Done"
echo ""
echo_date "Get eventid(s) changed:"
EVENTIDS=$( grep "EVENTIDS=" ${DIRTMP}/make_pull_from_gitlab.sh.log | awk -F"=" '{print $2}' )
echo "EVENTIDS=${EVENTIDS}"
rm ${DIRTMP}/make_pull_from_gitlab.sh.log
echo_date "Done"
echo ""
elif (( ${IN__REALTIME} == 0 )); then
echo "Check dir:"
EVENTIDS=${IN__EVENTID}
if [ -d ${DIRSHAKEMAP4_PROFILE_DATA}/${IN__EVENTID} ]; then
echo " the dir \"${DIRSHAKEMAP4_PROFILE_DATA}/${IN__EVENTID}\" already exists."
else
echo " the dir \"${DIRSHAKEMAP4_PROFILE_DATA}/${IN__EVENTID}\" doesn't exist; create..."
mkdir -p ${DIRSHAKEMAP4_PROFILE_DATA}/${IN__EVENTID}
fi
echo "Copy files:"
if [ -d ${DIRGITSHAKEMAP_FOR_PULL}/data/${IN__EVENTID:0:6}/${IN__EVENTID}/current ]; then
cp -v ${DIRGITSHAKEMAP_FOR_PULL}/data/${IN__EVENTID:0:6}/${IN__EVENTID}/current/* ${DIRSHAKEMAP4_PROFILE_DATA}/${IN__EVENTID}/current/
else
echo " the input directory \"${DIRGITSHAKEMAP_FOR_PULL}/data/${IN__EVENTID:0:6}/${IN__EVENTID}/\" doesn't exist"
exit 0
fi
echo "Done"
echo ""
fi
#EVENTIDS="20220503_0000135 20220404_0000034" # To test
# Check EVENTIDS
if [ -z "${EVENTIDS}" ]; then
echo "No event(s) to elaborate"
remove_lock_file
echo ""
date_end
exit 0
fi
#
echo_date "Start processing EVENTID(s):"
for EVENTID in ${EVENTIDS}; do
echo_date "********** START - Elaborating IN__EVENTID: ${EVENTID} **********"
FILE_EVENTXML=${DIRSHAKEMAP4_PROFILE_DATA}/${EVENTID}/current/event.xml
if [[ -f ${FILE_EVENTXML} ]]; then
echo "FILE_EVENTXML=${FILE_EVENTXML}"
CATALOG=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "catalog=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
DEPTH=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "depth=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
LAT=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "lat=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
LON=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "lon=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
MAG=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "mag=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
TIME=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "time=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
NETID=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "netid=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
NETWORK=$( cat ${FILE_EVENTXML} | tr -s ' ' '\n' | grep "network=" | awk -F"=" '{print $2}' | sed 's/\"//g' )
echo " CATALOG=${CATALOG}"
echo " DEPTH=${DEPTH}"
echo " LAT=${LAT}"
echo " LON=${LON}"
echo " MAG=${MAG}"
echo " TIME=${TIME}"
echo " NETID=${NETID}"
echo " NETWORK=${NETWORK}"
echo ""
# Set Mail variables
MAIL_GITHUB_EVENT_URL="https://github.com/INGV/shakemap-input-eu/blob/main/data/${EVENTID:0:6}/${EVENTID}/current"
MAIL_GITHUB_CONF_URL="https://github.com/INGV/shakemap-conf-eu/tree/main/config"
# Get country code
echo_date "Get Country code:"
CURL_RETRY_COUNT=1
CURL_RETRY_COUNT_MAX=5
HTTP_RESPONSE=-99
URL="http://api.geonames.org/countryCode?lat=${LAT}&lng=${LON}&radius=100&username=spada"
echo " URL=${URL}"
while (( ${CURL_RETRY_COUNT} <= ${CURL_RETRY_COUNT_MAX} )) && [[ "${HTTP_RESPONSE}" != "200" ]]; do
HTTP_RESPONSE=$(curl -s -o ${DIRTMP}/${EVENTID}__response.txt -w "%{http_code}" ${URL})
echo " HTTP_RESPONSE=${HTTP_RESPONSE}"
if [[ "${HTTP_RESPONSE}" != "200" ]]; then
sleep 2
fi
CURL_RETRY_COUNT=$(( ${CURL_RETRY_COUNT} + 1 ))
done
if (( ${CURL_RETRY_COUNT} > ${CURL_RETRY_COUNT_MAX} )) || [[ "${HTTP_RESPONSE}" != "200" ]]; then
rm ${DIRTMP}/${EVENTID}__response.txt
error_msg "!!! Error retreaving \"${URL}\"; HTTP_RESPONSE=${HTTP_RESPONSE}"
else
COUNTRY_CODE=$(cat ${DIRTMP}/${EVENTID}__response.txt | head -1 | tr -dc '[:print:]')
rm ${DIRTMP}/${EVENTID}__response.txt
fi
echo " COUNTRY_CODE=${COUNTRY_CODE}"
echo_date "Done"
echo ""
# START - Set ShakeMap conf. by Country code
echo_date "Set ShakeMap conf. by Country code:"
SHAKEMAP_FILES_CONF="gmpe_sets.conf model.conf modules.conf products.conf select.conf"
DIRSHAKEMAP4_PROFILE_CONF="${DIRSHAKEMAP4_PROFILE}/install/config"
echo " git pull last conf(s) into \"${DIRSHAKEMAP_CONFIGURATIONS}\":"
cd ${DIRSHAKEMAP_CONFIGURATIONS}
git pull
cd -
echo " done"
echo ""
echo " git status into \"${DIRSHAKEMAP4_PROFILE_CONF}\":"
cd ${DIRSHAKEMAP4_PROFILE_CONF}
git status . | grep "modified"
echo " done"
echo ""
echo " git checkout conf. files"
for SHAKEMAP_FILE_CONF in ${SHAKEMAP_FILES_CONF}; do
git checkout ${SHAKEMAP_FILE_CONF}
done
echo " done"
echo ""
echo " copy conf files"
#if [[ "${COUNTRY_CODE}" == "CH" ]]; then
# DIR_INSTITUTE="eth"
#elif [[ "${COUNTRY_CODE}" == "GR" ]]; then
# DIR_INSTITUTE="greece"
#else
# DIR_INSTITUTE="ingv"
#fi
if [[ "${COUNTRY_CODE}" == "CH" ]]; then
DIR_INSTITUTE="switzerland"
elif [[ "${COUNTRY_CODE}" == "GR" ]]; then
DIR_INSTITUTE="greece"
elif [[ "${COUNTRY_CODE}" == "AL" ]]; then
DIR_INSTITUTE="albania"
elif [[ "${COUNTRY_CODE}" == "HR" ]]; then
DIR_INSTITUTE="croatia"
elif [[ "${COUNTRY_CODE}" == "SI" ]]; then
DIR_INSTITUTE="slovenia"
elif [[ "${COUNTRY_CODE}" == "RO" ]]; then
DIR_INSTITUTE="romania"
elif [[ "${COUNTRY_CODE}" == "FR" ]]; then
DIR_INSTITUTE="france"
elif [[ "${COUNTRY_CODE}" == "BE" ]]; then
DIR_INSTITUTE="belgium"
else
DIR_INSTITUTE="italy"
fi
MAIL_GITHUB_CONF=
for SHAKEMAP_FILE_CONF in ${SHAKEMAP_FILES_CONF}; do
if [[ -f ${DIRSHAKEMAP_CONFIGURATIONS}/${DIR_INSTITUTE}/${SHAKEMAP_FILE_CONF} ]]; then
cp -v ${DIRSHAKEMAP_CONFIGURATIONS}/${DIR_INSTITUTE}/${SHAKEMAP_FILE_CONF} ${DIRSHAKEMAP4_PROFILE_CONF}/
MAIL_GITHUB_CONF="${MAIL_GITHUB_CONF} - ${MAIL_GITHUB_CONF_URL}/${DIR_INSTITUTE}/${SHAKEMAP_FILE_CONF} \n"
else
echo " The file \"${DIRSHAKEMAP_CONFIGURATIONS}/${DIR_INSTITUTE}/${SHAKEMAP_FILE_CONF}\" doesn't exist."
fi
done
echo " done"
echo ""
cd -
echo_date "Done"
echo ""
# END - Set ShakeMap conf. by Country code
# run ShakeMap
echo -e " \
Start ShakeMap for: \
\n\n \
EVENTID: ${EVENTID} \
\n \
TIME: ${TIME} \
\n \
MAG: ${MAG} \
\n \
COUNTRY_CODE: ${COUNTRY_CODE} \
\n\n \
INPUT PARAMS FROM: \
\n \
- ${MAIL_GITHUB_EVENT_URL} \
\n\n \
INPUT CONF FROM: \
\n \
${MAIL_GITHUB_CONF} \
\n\n \
DOCKER IMAGE: ${DOCKER_SHAKEMAP4_IMAGE} \
\n \
SCRIPT: ${DIRWORK}/$( basename ${0} ) \
\n \
HOST: $( hostname -f ) \
\n\n \
" | mutt -e 'my_hdr From: ShakeMapEU <[email protected]>' -s "$(hostname) - Start ShakeMap for ${EVENTID}" ${MAIL_TO}
#cd ${DIRSHAKEMAP4}
# Set 'select' module only for event M<7. Issue: https://gitlab.rm.ingv.it/shakemap/shakemap4/-/issues/15
MODULE_SELECT=""
if (( $(echo "${MAG} < 7" | bc -l) )); then
MODULE_SELECT="select"
fi
# Run docker
COMMAND="time docker run --rm --name shakemap4__${EVENTID} -v ${DIRSHAKEMAP4_PROFILES}:/home/shake/shakemap_profiles -v ${DIRSHAKEMAP4_DATA}:/home/shake/shakemap_data -v ${DIRSHAKEMAP4_LOCAL}:/home/shake/.local ${DOCKER_SHAKEMAP4_IMAGE} -p ${IN__PROFILE} -c\"shake ${EVENTID} ${MODULE_SELECT} assemble -c \\\"SM4 run\\\" model contour shape info stations raster rupture gridxml history plotregr mapping\" 2>&1 | tee -a ${DIRTMP}/shakemap4__${EVENTID}.txt "
echo "COMMAND=${COMMAND}"
eval ${COMMAND}
#exit
#time docker run --rm --name shakemap4__${EVENTID} -v ${DIRSHAKEMAP4_PROFILES}:/home/shake/shakemap_profiles -v ${DIRSHAKEMAP4_DATA}:/home/shake/shakemap_data -v ${DIRSHAKEMAP4_LOCAL}:/home/shake/.local ${DOCKER_SHAKEMAP4_IMAGE} -p ${IN__PROFILE} -c"shake ${EVENTID} ${MODULE_SELECT} assemble -c \"SM4 run\" model contour shape info stations raster rupture gridxml history plotregr mapping" 2>&1 | tee -a ${DIRTMP}/shakemap4__${EVENTID}.txt
#cd -
echo ""
# email for ending shakemap process
echo_date "Email for ending shakemap process:"
MAIL_JPGS=
for FILE_JPG in $( ls ${DIRSHAKEMAP4_PROFILE_DATA}/${EVENTID}/current/products/*.jpg ); do
if [ -f ${FILE_JPG} ]; then
MAIL_JPGS="${MAIL_JPGS} -a ${FILE_JPG}"
else
echo " the file \"${FILE_JPG}\" doesn't exist."
fi
done
echo -e " \
End ShakeMap for: \
\n\n \
EVENTID: ${EVENTID} \
\n \
TIME: ${TIME} \
\n \
MAG: ${MAG} \
\n \
COUNTRY_CODE: ${COUNTRY_CODE} \
\n\n \
INPUT PARAMS FROM: \
\n \
- ${MAIL_GITHUB_EVENT_URL} \
\n\n \
INPUT CONF FROM: \
\n \
${MAIL_GITHUB_CONF} \
\n\n \
DOCKER IMAGE: ${DOCKER_SHAKEMAP4_IMAGE} \
\n \
SCRIPT: ${DIRWORK}/$( basename ${0} ) \
\n \
HOST: $( hostname -f ) \
\n\n \
" | mutt -e 'my_hdr From: ShakeMapEU <[email protected]>' -s "$(hostname) - End ShakeMap for ${EVENTID}" ${MAIL_TO} -a ${DIRTMP}/shakemap4__${EVENTID}.txt ${MAIL_JPGS}
rm ${DIRTMP}/shakemap4__${EVENTID}.txt
echo_date "Done"
echo ""
#echo_date "START - Rsync on the external web site webpage and all events."
#echo "Sync base web page:"
#COMMAND1="time flock --verbose -n /tmp/rsync_1.lock rsync --timeout=15 -av --delete --exclude=.git --exclude=Docker --exclude=data ${DIRSHAKEMAP4_WEB}/ [email protected]:/var/www/shakemap/shake4"
#echo "COMMAND1=${COMMAND1}"
#eval ${COMMAND1}
#echo ""
#echo "Sync all events:"
#COMMAND3="time flock --verbose -n /tmp/rsync_3.lock rsync -av --delete --timeout=15 --exclude=.git ${DIRSHAKEMAP4_PROFILES}/world/data/ [email protected]:/var/www/shakemap/shake4/data/ &"
#echo "COMMAND3=${COMMAND3}"
#eval ${COMMAND3}
#echo ""
#echo_date "END - Rsync on the external web site webpage and all events."
#echo ""
else
echo ""
error_msg "!!! Doesn't exist file \"${FILE_EVENTXML}\" !!!"
fi
echo_date "********** END - Elaborating IN__EVENTID: ${EVENTID} **********"
done
echo_date "Done"
echo ""
# remove event(s) file
if [ -f ${FILE_EVENTS_TO_ELABORATE} ]; then
rm -f "${FILE_EVENTS_TO_ELABORATE}"
fi
if [ -f ${FILE_EVENTS_TO_ELABORATE}_tmp ]; then
rm -f "${FILE_EVENTS_TO_ELABORATE}_tmp"
fi
remove_lock_file
DATE_END=`date +%Y-%m-%d_%H:%M:%S`
date_end
echo ""
###################################