Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Make GFF files an optional input #22

Open
jonathanwaehrer opened this issue Sep 15, 2022 · 0 comments
Open

Make GFF files an optional input #22

jonathanwaehrer opened this issue Sep 15, 2022 · 0 comments
Labels
enhancement New feature or request

Comments

@jonathanwaehrer
Copy link
Collaborator

The tool uses GFF files to extract gene-names and -features in order to annotate differentially expressed genes. This step is not mandatory in order to analyse data with DESeq and caused many issues with the tool in the past due to the high variability among GFF files. Also sometimes, a user might not be able to acquire a GFF at all. It makes sense to change the upload of the GFF file from a mandatory to an optional argument.

@jonathanwaehrer jonathanwaehrer added the enhancement New feature or request label Sep 15, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant