From 7e0134c458ceeb63e618e5bd87f88478693d571a Mon Sep 17 00:00:00 2001 From: ashish615 Date: Wed, 4 Sep 2024 12:45:50 +0000 Subject: [PATCH] Dockerfile updated --- pipelines/single-cell-RNA-seq-analysis/Dockerfile | 4 +--- pipelines/single-cell-RNA-seq-analysis/Dockerfile.python | 4 +--- 2 files changed, 2 insertions(+), 6 deletions(-) diff --git a/pipelines/single-cell-RNA-seq-analysis/Dockerfile b/pipelines/single-cell-RNA-seq-analysis/Dockerfile index 1b61189..5407229 100644 --- a/pipelines/single-cell-RNA-seq-analysis/Dockerfile +++ b/pipelines/single-cell-RNA-seq-analysis/Dockerfile @@ -59,9 +59,7 @@ RUN groupadd --gid 1001 $SERVICE_NAME && \ RUN pip uninstall -y umap-learn WORKDIR / -RUN wget https://github.com/IntelLabs/Open-Omics-Acceleration-Framework/releases/download/2.1/Source_code_with_submodules.tar.gz -RUN tar -xzf Source_code_with_submodules.tar.gz -#RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git +RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git #SHELL ["/bin/bash", "-c", "source activate single_cell"] WORKDIR /Open-Omics-Acceleration-Framework/lib/tal/applications/UMAP_fast/umap_extend/ diff --git a/pipelines/single-cell-RNA-seq-analysis/Dockerfile.python b/pipelines/single-cell-RNA-seq-analysis/Dockerfile.python index e5d1d1e..97a864d 100644 --- a/pipelines/single-cell-RNA-seq-analysis/Dockerfile.python +++ b/pipelines/single-cell-RNA-seq-analysis/Dockerfile.python @@ -59,9 +59,7 @@ RUN groupadd --gid 1001 $SERVICE_NAME && \ RUN pip uninstall -y umap-learn WORKDIR / -RUN wget https://github.com/IntelLabs/Open-Omics-Acceleration-Framework/releases/download/2.1/Source_code_with_submodules.tar.gz -RUN tar -xzf Source_code_with_submodules.tar.gz -#RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git +RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git #SHELL ["/bin/bash", "-c", "source activate single_cell"] WORKDIR /Open-Omics-Acceleration-Framework/lib/tal/applications/UMAP_fast/umap_extend/