forked from nf-core/ampliseq
-
Notifications
You must be signed in to change notification settings - Fork 0
/
modules.json
122 lines (122 loc) · 5.49 KB
/
modules.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
{
"name": "nf-core/ampliseq",
"homePage": "https://github.com/nf-core/ampliseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "bba7e362e4afead70653f84d8700588ea28d0f9e",
"installed_by": ["modules"]
},
"cutadapt": {
"branch": "master",
"git_sha": "0efbaeb95c58da5a1096c99b5e919bc0c99cc952",
"installed_by": ["modules"]
},
"epang/place": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"epang/split": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"fastqc": {
"branch": "master",
"git_sha": "65ad3e0b9a4099592e1102e92e10455dc661cf53",
"installed_by": ["modules"]
},
"gappa/examineassign": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"gappa/examinegraft": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"gappa/examineheattree": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"hmmer/eslalimask": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"hmmer/eslreformat": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"hmmer/hmmalign": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"hmmer/hmmbuild": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fasta_newick_epang_gappa"]
},
"kraken2/kraken2": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["modules"],
"patch": "modules/nf-core/kraken2/kraken2/kraken2-kraken2.diff"
},
"mafft": {
"branch": "master",
"git_sha": "feb29be775d9e41750180539e9a3bdce801d0609",
"installed_by": ["fasta_newick_epang_gappa"]
},
"multiqc": {
"branch": "master",
"git_sha": "4ab13872435962dadc239979554d13709e20bf29",
"installed_by": ["modules"]
},
"pigz/uncompress": {
"branch": "master",
"git_sha": "4ef7becf6a2bbc8df466885d10b4051d1f318a6a",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "d0b4fc03af52a1cc8c6fb4493b921b57352b1dd8",
"installed_by": ["modules"]
},
"vsearch/cluster": {
"branch": "master",
"git_sha": "89945ea085b94d3413013b6c82e2633b5184f24d",
"installed_by": ["modules"]
},
"vsearch/sintax": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"vsearch/usearchglobal": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"fasta_newick_epang_gappa": {
"branch": "master",
"git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
"installed_by": ["subworkflows"]
}
}
}
}
}
}