diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 00000000..884b1e3a
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,42 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+authors:
+ - family-names: "Smit"
+ given-names: "Jochem H."
+ orcid: "https://orcid.org/0000-0002-3597-9429"
+title: "PyHDX"
+version: 0.4.0b5
+doi: 10.5281/zenodo.4062031
+date-released: 2021-12-01
+url: "https://github.com/Jhsmit/PyHDX"
+preferred-citation:
+ type: article
+ authors:
+ - family-names: "Smit"
+ given-names: "Jochem H."
+ orcid: "https://orcid.org/0000-0002-3597-9429"
+ - family-names: "Krishnamurthy"
+ given-names: "Srinath"
+ orcid: "https://orcid.org/0000-0001-5492-4450"
+ - family-names: "Srinivasu"
+ given-names: "Bindu Y."
+ orcid: "https://orcid.org/0000-0003-0875-2680"
+ - family-names: "Parakra"
+ given-names: "Rinky"
+ orcid: "https://orcid.org/0000-0001-8690-7073"
+ - family-names: "Karamanou"
+ given-names: "Spyridoula"
+ orcid: "https://orcid.org/0000-0002-8803-1404"
+ - family-names: "Economou"
+ given-names: "Anastassios"
+ orcid: "https://orcid.org/0000-0002-1770-507X"
+ doi: "10.1021/acs.analchem.1c02155"
+ journal: "Analytical Chemistry"
+ month: 9
+ start: 12840 # First page number
+ end: 12847 # Last page number
+ title: "Probing Universal Protein Dynamics Using Hydrogen–Deuterium Exchange Mass Spectrometry-Derived Residue-Level Gibbs Free Energy"
+ number: 38
+ volume: 93
+ year: 2021
+ url: "https://doi.org/10.1021/acs.analchem.1c02155"
diff --git a/README.rst b/README.rst
index 8c3701c2..ea9a96f5 100644
--- a/README.rst
+++ b/README.rst
@@ -27,7 +27,7 @@ PyHDX
.. raw:: html
-
+
PyHDX is python project which can be used to derive Gibbs free energy from HDX-MS data.
@@ -63,22 +63,17 @@ http://pyhdx.jhsmit.org/main
A test file can be downloaded from `here `_ and `here `_. (right click, save as).
-Two other web applications are available.
-To upload fitting results from the main application and visualize:
-http://pyhdx.jhsmit.org/single
-
-To upload multiple fitting result datasets and compare and visualize:
-http://pyhdx.jhsmit.org/diff
-
-The 0.4.0b1 version of PyHDX (featuring batch fitting / multiple states) is hosted at:
+The 0.4.0b4 version of PyHDX (featuring batch fitting / multiple states) is hosted at:
http://pyhdx-beta.jhsmit.org/main
The latest beta docs are found `here `_
-BioRxiv paper
-=============
+Publication
+===========
+
+Our Analytical Chemistry Publication describing PyHDX can be found here: https://doi.org/10.1021/acs.analchem.1c02155
-The latest version (v2) of our biorxiv paper can be found here: https://doi.org/10.1101/2020.09.30.320887
+The latest version (v2) of our biorxiv paper: https://doi.org/10.1101/2020.09.30.320887
Python code for analysis and generation the figures in the paper are here: https://github.com/Jhsmit/PyHDX-paper
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