default_testing.yaml

channels: # refactor channels in code to channel_identifiers
  laser_D:
    target: nanotimes
    value: [ 0, 1000 ]
  laser_A:
    target: nanotimes
    value: [ 1000, 2000 ] # intervals are inclusive, exclusive
  det_D:
    target: detectors
    value: 1
  det_A:
    target: detectors
    value: 0

streams:
  DD: [laser_D, det_D]
  DA: [laser_D, det_A]
  AA: [laser_A, det_A]
  AD: [laser_A, det_D]

# TODO this should move to web config
burst_search:
  DCBS:  # name of the burst search
    - streams: [DD, DA]  # photons streams to use
      L: 50
      M: 35
      T: 500.e-6
    - streams: [AA]
      L: 50
      M: 35
      T: 500.e-6
  APBS:
    - streams: [DD, DA, AA]
      L: 50
      M: 100
      T: 500.e-6
  test234:
    - streams: [DD, DA, AA]
      L: 500
      M: 100
      T: 500.e-6

aggregations:
  parse_expr:
    exprs:
      n_photons: len()
  # same as parse expr above
  # length:
  #   name: n_photons
  stream_length: {}
  stream_mean: 
    column: nanotimes
  column_stats: # get timestamps min/max/mean
    column: timestamps
  stream_asymmetry:
    lhs_streams: [DD, DA]
    rhs_streams: [AA]
    column: timestamps

# dict of transforms to apply in order
transforms:
  "alex_2cde:75":
    tau: 75.e-6
  "alex_2cde:150":
    tau: 150.e-6
  fret_2cde:
    tau: 45.e-6
  with_columns:
    exprs:
      E_app: "n_DD / (n_DD + n_DA)"
      S_app: "(n_DD + n_DA) / (n_DD + n_DA + n_AA)"
      timestamps_length: "timestamps_max - timestamps_min"


# settings related to dont-fret's web interface
web:
  password: null
  default_dir: tests\test_data\input\ds2 # default directory show in the file browser
  protect_filebrowser: false # true to prevent navigation above default_dir
  burst_filters: # default filters to apply to burst search filters
    - name: n_photons
      min: 150