pip install py2lse.g.,
fpath = "....../"
ips.listdir(fpath, kind='pdf', sort_by="size", ascending=0, output = 'df')it filters the ‘.pdf’ files, and sort by the (file-size/name, length of name, create_time, mod_time, last_open_time …) it returns a DataFrame or BoxList (setting by ‘output’)
dir_data, dir_fig = newfolder(fpath, {'data', 'fig'}) # create folderfinfo(fpath) # get info: size, creation time, mod time, parent_path, fname, kind...dir_lib(lib_of_interest) # get the fpathlist functions in a package
e.g.,
fload(fpath, kind=None, **kwargs)load file (docx, pdf, image, md, json,csv,txt, html, yaml, xml, xlsx…) or save file.
# figsave, as used in matlab.
figsave(dir_save, "fname.pdf", dpi=300)extract images from a PDF, or merge images into a pdf file
pdf2img(dir_pdf, dir_save=None, page=None, kind="png",verbose=True, **kws)
pdf2img(fpath, page=[None, None]) # means extract all pages
# processing page: 1
# processing page: 2
# processing page: 3
# processing page: 4
# processing page: 5img2pdf(dir_img, kind="jpeg",page=None, dir_save=None, page_size="a4", dpi=300)docx2pdf(dir_docx, dir_save) # convert docx to pdfquickly get the size info
paper_size('a4') # [210, 297]
paper_size('card') # [85.6, 53.98]str2num(“123.345 dollers”,2)# => 123.35 (float) str2list("abcd") # ['a','b','c','d']list2str(['a','b','c','d']) # 'abcd'sreplace(text, dict_replace=None, robust=True)ssplit(text, by="space", verbose=False, **kws) # by = "word", "sentence", ", ","num_strings","digital".....,"length", "upper followed lower", "lower followed upper"text = "The most pronounced physiological changes in sleep occur in the brain.[10] The brain uses significantly less energy during sleep than it does when awake, especially during non-REM sleep. In areas with reduced activity, the brain restores its supply of adenosine triphosphate (ATP), the molecule used for short-term storage and transport of energy.[11] In quiet waking, the brain is responsible for 20% of the body's energy use, thus this reduction has a noticeable effect on overall energy consumption.[12]"
ssplit(text, by=["[10]", "[11]", "[12]"])
# ['The most pronounced physiological changes in sleep occur in the brain.',
# ' The brain uses significantly less energy during sleep than it does when awake, especially during non-REM sleep. In areas with reduced activity, the brain restores its supply of adenosine triphosphate (ATP), the molecule used for short-term storage and transport of energy.',
# " In quiet waking, the brain is responsible for 20% of the body's energy use, thus this reduction has a noticeable effect on overall energy consumption.",
# '']ssplit(text[:30], by="len", length=5)
# ['The m', 'ost p', 'ronou', 'nced ', 'physi', 'ologi']ssplit(text, by="non_alphanumeric")
# ['The most pronounced physiological changes in sleep occur in the brain.[',
# '10',
# '] The brain uses significantly less energy during sleep than it does when awake, especially during non-REM sleep. In areas with reduced activity, the brain restores its supply of adenosine triphosphate (ATP), the molecule used for short-term storage and transport of energy.[',
# '11',
# '] In quiet waking, the brain is responsible for ',
# '20',
# "% of the body's energy use, thus this reduction has a noticeable effect on overall energy consumption.[",
# '12',
# ']']ssplit(text, by="sent")
#['The most pronounced physiological changes in sleep occur in the brain.',
#'[10] The brain uses significantly less energy during sleep than it does when awake, especially during non-REM sleep.',
#'In areas with reduced activity, the brain restores its supply of adenosine triphosphate (ATP), the molecule used for short-term storage and transport of energy.',
#"[11] In quiet waking, the brain is responsible for 20% of the body's energy use, thus this reduction has a noticeable effect on overall energy consumption.",
#'[12]']ssplit(text, by="lowup")
# ["The most pronounced physiological changes in sleep occur in the brain.[10] The brain uses significantly less energy during sleep than it does when awake, especially during non-REM sleep. In areas with reduced activity, the brain restores its supply of adenosine triphosphate (ATP), the molecule used for short-term storage and transport of energy.[11] In quiet waking, the brain is responsible for 20% of the body's energy use, thus this reduction has a noticeable effect on overall energy consumption.[12]"]sreplace(text, dict_replace=None, robust=True)text= 'The most pronounced physiological changes in sleep occur in the brain.[10] '
'The brain uses significantly less energy during sleep than it does when '
'awake, especially during non-REM sleep. In areas with reduced activity, the '
'brain restores its supply of adenosine triphosphate (ATP), the molecule used '
'for short-term storage and transport of energy.[11] In quiet waking, the '
"brain is responsible for 20% of the body's energy use, thus this reduction "
'has a noticeable effect on overall energy consumption.[12]'
sreplace(text)
"The most pronounced physiological changes in sleep occur in the brain"
sreplace(text,{"sleep":"wakewake"}) # sreplace(text,dict(sleep="wakewake"))
"The most pronounced physiological changes in wakewake occur in the brain."FuncCmpt(X1, X2, pmc='auto', pair='unpaired')
e.g.,
X1 = [19, 22, 16, 29, 24]
X2 = [20, 11, 17, 12, 22]
p, res = FumcCmpt(X1,X2, pmc='pmc', pair = 'unpair')
# normally distributed
# normally distributed
# unpaired t text
# t(8) = 1.81117, p=0.1077
p,res = FuncCmpt(x1,x2, pmc='pmc',pair='pair')
# paired t test
# t(4)=1.55556,p=0.19479FuncMultiCmpt(pmc='pmc', pair='unpair', data=None, dv=None, factor=None,
ss_type=2, detailed=True, effsize='np2',
correction='auto', between=None, within=None,
subject=None, group=None
)df = pd.DataFrame({'score': [64, 66, 68, 75, 78, 94, 98, 79, 71, 80,
91, 92, 93, 90, 97, 94, 82, 88, 95, 96,
79, 78, 88, 94, 92, 85, 83, 85, 82, 81],
'group': np.repeat(['strat1', 'strat2', 'strat3'],repeats=10)})
res = FuncMultiCmpt(pmc='auto',pair='unpaired',data=df, dv='score', factor='group', group='group')
res["APA"]
# ['group:F(2, 17)=9.71719,p=0.0016']FuncStars(ax,
pval=None,
Ylim=None,
Xlim=None,
symbol='*',
yscale=0.95,
x1=0,
x2=1,
alpha=0.05,
fontsize=14,
fontsize_note=6,
rotation=0,
fontname='Arial',
values_below=None,
linego=True,
linestyle='-',
linecolor='k',
linewidth=.8,
nsshow='off',
symbolcolor='k',
tailindicator=[0.06, 0.06],
report=None,
report_scale=-0.1,
report_loc=None)
stdshade(ax=None,*args, **kwargs)add_colorbar(im, width=None, pad=None, **kwargs)get_color(n=1, cmap='auto')get_color(12)
# ['#474747',
# '#FF2C00',
# '#0C5DA5',
# '#845B97',
# '#58BBCC',
# '#FF9500',
# '#D57DBE',
# '#474747',
# '#FF2C00',
# '#0C5DA5',
# '#845B97',
# '#58BBCC']get_color(5, cmap="jet") # ['#000080', '#000084', '#000089', '#00008d', '#000092']
get_color(5,cmap="rainbow") #['#8000ff', '#7e03ff', '#7c06ff', '#7a09ff', '#780dff']imgsets(
img,
sets=None,
show=True,
show_axis=False,
size=None,
dpi=100,
figsize=None,
auto=False,
filter_kws=None,
)img = imgsets(
fpath,
sets={"rota": -5, "sharp": 10},
dpi=200,
# show_axis=True,
)
figsave(dir_save, "test1_sharp.pdf")
img2 = imgsets(
fpath,
sets={"rota": -5, "crop": [100, 100, 300, 400], "sharp": 10},
dpi=200,
filter_kws={
"sharpen": 10,
},
# show_axis=True,
)
figsave(dir_save, "test2_crop.pdf")fload(dir_img)
imgsets(img, sets={"color": 1.5}, show=0)
imgsets(img, sets={"pad": (300, 300), "bgcolor": (73, 162, 127)}, show=0)
imgsets(
img,
sets={"contrast": 1.3, "color": 1.5, "pad": (300, 300)},
show=0,
filter_kws=dict(sh=1050, EDG=10, gaus=5),
)
imgsets(
img,
sets={"color": 10.5},
show=0,
filter_kws=dict(EDGE_ENHANCE=50, EDGE_NHANCEmore=50),
)
imgsets(
img,
sets=dict(contr=1.5, rm="default"),
show=0,
# filter_kws=dict(sharp=1),
)
imgsets(
img,
sets=dict(contr=0, rm="default"),
show=0,
filter_kws=dict(sharp=1),
)
figsets(*args)cm = 1 / 2.54
# plt.style.use("paper")
plt.figure(figsize=[8 * cm, 5 * cm])
for i in range(2, 4):
plt.plot(x, y * i, ls="-")
figsets(
plt.gca(),
{
"xlabel": f"time([{x[0]}:{x[-1]}])",
"ylabel": "Amplitude (signals)",
# "titel": "paper",
"xlim": [0, 600],
"xtick": np.arange(0, 620, 150),
"xlabel": "test xticklabel",
# "ylim": [-2.5, 2.5],
"sp": "go",
# "style": "paper",
"box": ":",
"grid": "on",
"minorticks": "on",
"ticks": {"c": "k"},
},
)
figsets('style','paper')cm = 1/2.54 # centimeters in inches
fig, ax = plt.subplots(1, 1, figsize=(7*cm, 5*cm))
x = np.linspace(0, 2 * np.pi, 50) * 100
y = np.sin(x)
c=get_color(7)
for i in range(2,7):
plt.plot(x, y*i,c=c[i])
figsets(
ax,
{
"xlim": [0, 450],
# "ylim": [-1.5, 1.5],
"xlabel": "2222",
# "style":"paper",
"yticks": np.arange(-5,5, 2),
"ylabel": "ylabelsssss",
"xtkbel": range(0, 800, 100),
# "spine": 5,
"suptitle": "supertitle",
# "minorticks": "y",
# "ticksloc":"lt",
# "ticks": {"direction": "out",'c':'b'},
"rotation":45,
# 'box':"lt",
# "labellocation":'r',
# "ax_color":'b',
# 'grid':{"which":'minor','lw':1,"ls":'-.','c':'b','al':0.3},
},
)