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btl2.owl
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btl2.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.org/biotop/btl2.owl#"
xml:base="http://purl.org/biotop/btl2.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:btl2="http://purl.org/biotop/btl2.owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.org/biotop/btl2.owl">
<dc:contributor>Catalina Martínez-Costa</dc:contributor>
<dc:format>application/rdf+xml</dc:format>
<dc:contributor>Daniel Schober</dc:contributor>
<dc:identifier>http://purl.org/biotop/btl2.owl</dc:identifier>
<dc:contributor>Udo Hahn</dc:contributor>
<dc:date>November 7, 2016</dc:date>
<dc:contributor>Stefan Schulz</dc:contributor>
<dc:publisher>Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz, Austria</dc:publisher>
<dc:contributor>Gustavo Uribe</dc:contributor>
<dc:contributor>Filipe Santana da Silva</dc:contributor>
<dc:contributor>Elena Beisswanger</dc:contributor>
<dc:contributor>Martin Boeker</dc:contributor>
<dc:contributor>Holger Stenzhorn</dc:contributor>
<dc:language>en</dc:language>
<dc:title>BioTopLite2</dc:title>
<dc:source>http://purl.org/biotop</dc:source>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<!-- http://purl.org/dc/elements/1.1/format -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/format"/>
<!-- http://purl.org/dc/elements/1.1/identifier -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/identifier"/>
<!-- http://purl.org/dc/elements/1.1/language -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/language"/>
<!-- http://purl.org/dc/elements/1.1/publisher -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/publisher"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://www.w3.org/2004/02/skos/core#altLabel -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#altLabel"/>
<!-- http://www.w3.org/2004/02/skos/core#definition -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#definition"/>
<!-- http://www.w3.org/2004/02/skos/core#example -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#example"/>
<!-- http://www.w3.org/2004/02/skos/core#prefLabel -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.org/biotop/btl2.owl#atSomeTime -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#atSomeTime">
<rdfs:label>at some time</rdfs:label>
<skos:definition>Relates a temporally nonqualified instance of a continuant to its temporarily qualified "stages"
Example:
John atSomeTime John_at_20120112
John_at_20120112 hasTemporalContext 20120112
John atSomeTime John_at_20130101
John_at_20130101 hasTemporalContext 20130101
John_at_20120112 hasPart Heart1
John_at_20130101 hasPart Heart2
Notes:
- John, John_20120112, John_20130101 are the same individuals
- Heart 1 and Heart 2 are different individuals
- Every continuant can be an instance of temporally qualified continuant</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#causes -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#causes">
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isCausedBy"/>
<rdfs:label>causes</rdfs:label>
<skos:definition>Causation of a process is here understood as the disjunction between agency (a continuant causes a process) and as the realization of a disposition or a function, i.e. a disposition is considered the cause of a process.
</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasAgent -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasAgent">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasParticipant"/>
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isCausedBy"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isAgentIn"/>
<rdfs:label>has agent</rdfs:label>
<skos:definition>agentIn (inverse: hasAgent) relates a participant with a process, with the condition that this participant is causally active in the relevant process.
This is the reason why agentIn is subsumed by the relation causedBy.
Example: A physician is the agent in a operation process; a solvent is the agent in a solving process. </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasBoundary -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasBoundary">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasPart"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isBoundaryOf"/>
<rdfs:label>has boundary</rdfs:label>
<skos:definition>has boundary (inverse: boundary) relates (spatio)temporally qualified object with another object it fully or partially bounds.
Example: the surface of my liver physically bounds my liver.
this point in time is the boundary of my working contract</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasComponentPart -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasComponentPart">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasPart"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isComponentPartOf"/>
<rdfs:label>has component part</rdfs:label>
<skos:definition>The non-transitive relation hasComponentPart (inverse: componentPartOf) relates components with a compound. Components strictly partition the compound, and the compound is the mereological sum of its components. A loss of some component affects the integrity of the compound, and possibly the type it instantiates, e.g. a complete vs. a defective organism.
The choice of what is a component of a compound is somewhat arbitrary, because there are several ways to divide a whole into parts. Strictly spoken, this relation should refer to some partition.
Components should be - at least - partly bona fide parts. The use of this relation also requires the commitment to an underlying granularity level. So could we consider the codons (base triples) as the components of a DNA molecule but also the single nucleotides. Note that components of a compound may also be portions of matter.
Examples: my liver is a component of my organism, a carboxy group is a component of some organic acid molecule.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasCondition -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasCondition">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isConditionOf"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#hasCondition"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#isRealizationOf"/>
</owl:propertyChainAxiom>
<rdfs:label>has condition</rdfs:label>
<skos:definition>'has condition' (inverse 'is condition of')
connects exclusively situations (temporal slices of lives) with conditions as present during the whole extent of the corresponding situation</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasGranularPart -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasGranularPart">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasPart"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isGranularPartOf"/>
<rdfs:label>has granular part</rdfs:label>
<skos:definition></skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasLife -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasLife">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isParticipantIn"/>
<rdfs:label>has life</rdfs:label>
<skos:definition>'has life' (inverse 'is life of') connects a continuant with its life</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasOutcome -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasOutcome">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasParticipant"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isOutcomeOf"/>
<rdfs:label>has outcome</rdfs:label>
<skos:definition>outcomeOf (inverse: hasOutcome) relates a participant to a process. This participant either
- a) comes into being during the process
or - b) undergoes some change during the process, so that it instantiates a different class at the end of the process
and it constitutes (one of) the main result(s) of the process
Example: a Protein molecule is the outcome of a translation process.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasPart -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasPart">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#includes"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isPartOf"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>has part</rdfs:label>
<skos:definition xml:lang="201209091213 my childhood is part of my life this title is part of this book">'has part' (inverser: 'part of') relates a spatiotemporally qualified entity with another spatiotemporally qualified entity it is part of
Example:
MyMitralValve@201209091213 is part of my heart</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasParticipant -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasParticipant">
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isParticipantIn"/>
<rdfs:label>has participant</rdfs:label>
<skos:definition>'has participant' (inverse: 'is participant in') relates a process with a non processual entity which plays some role in the process. Process participants may exist during the whole process, remain unchanged or undergo changes; they may come into being or get out of being during the process.
Process participation is distinguished from process location.
Example:
An urea molecule which is excreted in a renal filtration process is participant of this process.
A person who undergoes an operation is participant of this process.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasPatient -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasPatient">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasParticipant"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isPatientIn"/>
<rdfs:label>has patient</rdfs:label>
<skos:definition>patientIn (inverse: hasPatient) relates a participant with a process, with the condition that that this participant is not causally active.
Example: A prey is the patient in a hunting process; a solute is the patient in a solving process. </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#hasRealization -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#hasRealization">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#causes"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isRealizationOf"/>
<rdfs:label>has realization</rdfs:label>
<skos:definition>Realization occurs if a disposition, a function, or a role manifests itself as a process.
Certain information entities can also have realizations, e.g. plans that are realized in processes.
Example: the disposition of a bird to fly (which exists even when it does not fly) is realized by its process of flying. </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#includes -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#includes">
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isIncludedIn"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>includes</rdfs:label>
<skos:definition>includedIn (inverse: includes) is the most general relation which relates one (spatio)temporally qualified entity with another (spatio)temporally qualified entity where it occurs, inheres, or is part of.
Example: A heart pumping process is included in a heart.
A day is included in a month
John</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#inheresIn -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#inheresIn">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isIncludedIn"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#isBearerOf"/>
<rdfs:label>inheres in</rdfs:label>
<skos:definition>inheres in (inverse: is bearer of) relates a quality, role, function, disposition, or information object with the physical entity it depends on.
Example: a color inheres in a paint, the ability to fly inheres in a bird, or a pdf file inheres in a USB stick.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isAgentIn -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isAgentIn">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#causes"/>
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isParticipantIn"/>
<rdfs:label>is agent in</rdfs:label>
<skos:definition>agentIn (inverse: hasAgent) relates a participant with a process, with the condition that this participant is causally active in the relevant process.
This is the reason why agentIn is subsumed by the relation causedBy.
Example: A physician is the agent in a operation process; a solvent is the agent in a solving process. </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isBearerOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isBearerOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#includes"/>
<rdfs:label>is bearer of</rdfs:label>
<skos:definition>inheres in (inverse: is bearer of) relates a quality, role, function, disposition, or information object with the physical entity it depends on.
Example: a color inheres in a paint, the ability to fly inheres in a bird, or a pdf file inheres in a USB stick.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isBoundaryOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isBoundaryOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isPartOf"/>
<rdfs:label>is boundary of</rdfs:label>
<skos:definition>has boundary (inverse: boundary) relates (spatio)temporally qualified object with another object it fully or partially bounds.
Example: the surface of my liver physically bounds my liver.
this point in time is the boundary of my working contract</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isCausedBy -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isCausedBy">
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#isRealizationOf"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#inheresIn"/>
</owl:propertyChainAxiom>
<rdfs:label>is caused by</rdfs:label>
<skos:definition>Causation of a process is here understood as the disjunction between agency (a continuant causes a process) and as the realization of a disposition or a function, i.e. a disposition is considered the cause of a process.
</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isComponentPartOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isComponentPartOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isPartOf"/>
<rdfs:label>is component part of</rdfs:label>
<skos:definition>The non-transitive relation hasComponentPart (inverse: componentPartOf) relates components with a compound. Components strictly partition the compound, and the compound is the mereological sum of its components. A loss of some component affects the integrity of the compound, and possibly the type it instantiates, e.g. a complete vs. a defective organism.
The choice of what is a component of a compound is somewhat arbitrary, because there are several ways to divide a whole into parts. Strictly spoken, this relation should refer to some partition.
Components should be - at least - partly bona fide parts. The use of this relation also requires the commitment to an underlying granularity level. So could we consider the codons (base triples) as the components of a DNA molecule but also the single nucleotides. Note that components of a compound may also be portions of matter.
Examples: my liver is a component of my organism, a carboxy group is a component of some organic acid molecule.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isConditionOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isConditionOf">
<rdfs:label>is condition of</rdfs:label>
<skos:definition>'has condition' (inverse 'is condition of')
connects exclusively situations (temporal slices of lives) with conditions as present during the whole extent of the corresponding situation</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isGranularPartOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isGranularPartOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isPartOf"/>
<rdfs:label>is granular part of</rdfs:label>
<skos:definition></skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isIncludedIn -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isIncludedIn">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>is included in</rdfs:label>
<skos:definition>includedIn (inverse: includes) is the most general relation which relates one (spatio)temporally qualified entity with another (spatio)temporally qualified entity where it occurs, inheres, or is part of.
Example: A heart pumping process is included in a heart.
A day is included in a month
John</skos:definition>
<skos:definition>isIncludedIn is a very broad relation which relates an entity with the place it occurs, inheres, or is part of.
See property chain: a participant of a process at a given time is located where the process is located.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isLifeOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isLifeOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#hasParticipant"/>
<rdfs:label>is life of</rdfs:label>
<skos:definition>'has life' (inverse 'is life of') connects a continuant with its life</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isOutcomeOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isOutcomeOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isParticipantIn"/>
<rdfs:label>is outcome of</rdfs:label>
<skos:definition>outcomeOf (inverse: hasOutcome) relates a participant to a process. This participant either
- a) comes into being during the process
or - b) undergoes some change during the process, so that it instantiates a different class at the end of the process
and it constitutes (one of) the main result(s) of the process
Example: a Protein molecule is the outcome of a translation process.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isPartOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isPartOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isIncludedIn"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>is part of</rdfs:label>
<skos:definition xml:lang="201209091213 my childhood is part of my life this title is part of this book">'has part' (inverser: 'part of') relates a spatiotemporally qualified entity with another spatiotemporally qualified entity it is part of
Example:
MyMitralValve@201209091213 is part of my heart</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isParticipantIn -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isParticipantIn">
<rdfs:label>is participant in</rdfs:label>
<skos:definition>'has participant' (inverse: 'is participant in') relates a process with a non processual entity which plays some role in the process. Process participants may exist during the whole process, remain unchanged or undergo changes; they may come into being or get out of being during the process.
Process participation is distinguished from process location.
Example:
An urea molecule which is excreted in a renal filtration process is participant of this process.
A person who undergoes an operation is participant of this process.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isPatientIn -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isPatientIn">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isParticipantIn"/>
<rdfs:label>is patient in</rdfs:label>
<skos:definition>patientIn (inverse: hasPatient) relates a participant with a process, with the condition that that this participant is not causally active.
Example: A prey is the patient in a hunting process; a solute is the patient in a solving process. </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isPrecededBy -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isPrecededBy">
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#precedes"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>is preceded by</rdfs:label>
<skos:definition>precedes (inverse: precededBy) relates two processes, one of which ends or totally happens before the second one begins.
Example: fecundation precedes embryonic development.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isProjectionOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isProjectionOf">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#projectsOnto"/>
<rdfs:label>is projection of</rdfs:label>
<skos:definition>projects onto (inverse: is projection of) relates an entity with a spatial, temporal, or abstract region.
- material entities project onto spatial regions
- process project onto temporal regions
- qualities project onto abstract value region. The underlying idea, borrowed from the DOLCE ontology, is that the attribute / value distinction - as ubiquitous in information systems - should at least be optionally expressible in ontologies.
Value regions are abstract regions, in which qualitative just as quantitative "values" are located. Like in topographic regions, these entities can overlap or be disjoint.
Example: "Color" as quality may be refined as "Red Color". It can be fully defined in by "projects onto some RedColorRegion" </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isRealizationOf -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isRealizationOf">
<rdfs:subPropertyOf rdf:resource="http://purl.org/biotop/btl2.owl#isCausedBy"/>
<rdfs:label>is realization of</rdfs:label>
<skos:definition>Realization occurs if a disposition, a function, or a role manifests itself as a process.
Certain information entities can also have realizations, e.g. plans that are realized in processes.
Example: the disposition of a bird to fly (which exists even when it does not fly) is realized by its process of flying. </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isReferredToAtTime -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isReferredToAtTime">
<rdfs:label>is referred to at time</rdfs:label>
<skos:definition>'is referred to at time'
relates a temporally qualified continuant with its the point in time at which a temporally relevant assertion is made.
Should be functional. Functionality property not set for performance reasons</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#isRepresentedBy -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#isRepresentedBy">
<owl:inverseOf rdf:resource="http://purl.org/biotop/btl2.owl#represents"/>
<rdfs:label>is represented by</rdfs:label>
<skos:definition>is represented by (inverse: represents) relates entities with information entities. In contrast to encoding, the represented entity is completely independent on the denoting one.
Example: The inflammation of a sinus is represented by the word 'Sinusitis'; as well as by the ICD code "J10"
</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#precedes -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#precedes">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>precedes</rdfs:label>
<skos:definition>precedes (inverse: precededBy) relates two processes, one of which ends or totally happens before the second one begins.
Example: fecundation precedes embryonic development.</skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#projectsOnto -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#projectsOnto">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:label>projects onto</rdfs:label>
<skos:definition>projects onto (inverse: is projection of) relates an entity with a spatial, temporal, or abstract region.
- material entities project onto spatial regions
- a temporally qualified continuant projects onto a temporal region
- process project onto temporal regions
- qualities project onto abstract value region. The underlying idea, borrowed from the DOLCE ontology, is that the attribute / value distinction - as ubiquitous in information systems - should at least be optionally expressible in ontologies.
Value regions are abstract regions, in which qualitative just as quantitative "values" are located. Like in topographic regions, these entities can overlap or be disjoint.
Example: "Color" as quality may be refined as "Red Color". It can be fully defined in by "projects onto some RedColorRegion" </skos:definition>
</owl:ObjectProperty>
<!-- http://purl.org/biotop/btl2.owl#represents -->
<owl:ObjectProperty rdf:about="http://purl.org/biotop/btl2.owl#represents">
<rdfs:label>represents</rdfs:label>
<skos:definition>is represented by (inverse: represents) relates entities with information entities. In contrast to encoding, the represented entity is completely independent on the denoting one.
Example: The inflammation of a sinus is represented by the word 'Sinusitis'; as well as by the ICD code "J10"
</skos:definition>
</owl:ObjectProperty>
<!-- http://www.w3.org/2002/07/owl#topObjectProperty -->
<owl:ObjectProperty rdf:about="http://www.w3.org/2002/07/owl#topObjectProperty">
<rdfs:comment>The hierarchy of object properties is assumed to be exhaustive. In case the inclusion of new object properties is considered, it should be analyzed whether they can be expressed by the existing ones or whether they can be expressed as subclassed of process</rdfs:comment>
<rdfs:label>top object property</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.org/biotop/btl2.owl#Action -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Action">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Process"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasAgent"/>
<owl:someValuesFrom rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:label>action</rdfs:label>
<skos:definition>An action is a processual entity that that is promoted by an agent, having a clear role distinction between agent and patient</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#AmountOfPureSubstance -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#AmountOfPureSubstance">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#CollectiveMaterialEntity"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasGranularPart"/>
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Atom"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#MonoMolecularEntity"/>
</owl:unionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#PluralityOfOrganisms"/>
<rdfs:label>amount of pure substance</rdfs:label>
<skos:definition>collection with molecules or atoms as granular parts of the same sort</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#Atom -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Atom">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#Compound"/>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#InformationObject"/>
<rdfs:label>atom</rdfs:label>
<skos:definition>Basic building block of molecules. Particle of discrete types. Biologically important atoms are C, N, H, O, P, S, Na, Ca, K, Mg, Cl, J, Fe, Co, Zn ,... Atoms may be electrically neutral or ionic.</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#CanonicalValueRegion -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#CanonicalValueRegion">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#CanonicityValueRegion"/>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#NoncanonicalValueRegion"/>
<rdfs:comment>abstract region in which the value "canonical" of canonicity is located</rdfs:comment>
<rdfs:label>canonical value region</rdfs:label>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#Canonicity -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Canonicity">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#Quality"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#isIncludedIn"/>
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Function"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#ImmaterialObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#MaterialObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Process"/>
</owl:unionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#projectsOnto"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#CanonicityValueRegion"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label>canonicity</rdfs:label>
<skos:definition>The condition of an entity in terms of being well or ill-formed or behaving</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#CanonicityValueRegion -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#CanonicityValueRegion">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#ValueRegion"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#isProjectionOf"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Canonicity"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#TaxonValueRegion"/>
<rdfs:label>canonicity value region</rdfs:label>
<skos:definition>abstract region in which values of canonicity are located</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#Cell -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Cell">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#StructuredBiologicalEntity"/>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#CellularComponent"/>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#OrganismPart"/>
<rdfs:label>cell</rdfs:label>
<skos:definition>Constituting unit of an organism. The boundary between cell, syncytium and subcellular fragments such as platelets is problematic. Hence no full definition possible.</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#CellularComponent -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#CellularComponent">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#StructuredBiologicalEntity"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#atSomeTime"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#isPartOf"/>
<owl:someValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Cell"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#OrganismPart"/>
<rdfs:label>cellular component</rdfs:label>
<skos:definition>Components which only can be formed inside living cells but which may survive their host cell.</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#CollectiveMaterialEntity -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#CollectiveMaterialEntity">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#MaterialObject"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasGranularPart"/>
<owl:someValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#MaterialObject"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment></rdfs:comment>
<rdfs:label>collective material entity</rdfs:label>
<skos:definition>Mereological sum of multiple grains of the same sort without clear identity and unity criteria.
Whether or not the grains are considered of the same sort depends on the view. Therefore this class does not really make a clear categorial distinction, because all matter can be described as a collection of atoms.
As a consequence, these classes are not fully defined.
</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#CollectiveProcess -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#CollectiveProcess">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#Process"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasGranularPart"/>
<owl:someValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Process"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasGranularPart"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Process"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:label>collective process</rdfs:label>
<skos:definition>The sum of processes of the same sort. E.g. a sequence of heartbeats</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#Compound -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Compound">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#MaterialObject"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasPart"/>
<owl:someValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#SubAtomicParticle"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#SubAtomicParticle"/>
<rdfs:label>compound</rdfs:label>
<skos:definition>A compound is a material entity that consists of well-defined component parts</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#CompoundOfCollectiveMaterialEntities -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#CompoundOfCollectiveMaterialEntities">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Compound"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasComponentPart"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#CollectiveMaterialEntity"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#Compound"/>
<owl:disjointWith rdf:resource="http://purl.org/biotop/btl2.owl#PluralityOfOrganisms"/>
<rdfs:label>compound of collective material entities</rdfs:label>
<skos:definition>Composition of different kinds of collections without clear unity and identity criteria.
Old name: compound of collections.
Practically all naturally occurring substances are of this sort. The different compounds are also called fractions</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#Condition -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Condition">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Disposition"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Function"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#MaterialObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#Process"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#Particular"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#isConditionOf"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Situation"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label>condition</rdfs:label>
<skos:definition>Union of material entity, process, function, disposition. The rationale of this class is to represent the ambiguous nature of what is commonly referred to by disease, disorder, health-related condition (not necessarily pathologic).</skos:definition>
</owl:Class>
<!-- http://purl.org/biotop/btl2.owl#Disposition -->
<owl:Class rdf:about="http://purl.org/biotop/btl2.owl#Disposition">
<rdfs:subClassOf rdf:resource="http://purl.org/biotop/btl2.owl#Particular"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#inheresIn"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#ImmaterialObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#InformationObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#MaterialObject"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#atSomeTime"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Disposition"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasPart"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Disposition"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#hasRealization"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Process"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#isIncludedIn"/>
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#ImmaterialObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#InformationObject"/>
<rdf:Description rdf:about="http://purl.org/biotop/btl2.owl#MaterialObject"/>
</owl:unionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.org/biotop/btl2.owl#isPartOf"/>
<owl:allValuesFrom rdf:resource="http://purl.org/biotop/btl2.owl#Disposition"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label>disposition</rdfs:label>
<skos:definition>A disposition is a realizable entity.
Its manifestation is a process its bearer is involved in virtue of the bearer's physical make-up.</skos:definition>
</owl:Class>