From 6c2746fc509e598f7a164a60222718248bbb7bb8 Mon Sep 17 00:00:00 2001 From: KristofferC Date: Tue, 19 Dec 2023 12:44:50 +0100 Subject: [PATCH] update dependencies --- Manifest.toml | 2109 +++++++++++++++++++++++++++++++------------------ Project.toml | 1 - 2 files changed, 1324 insertions(+), 786 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 634f50d..d351552 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.0-DEV" +julia_version = "1.10.0-rc3" manifest_format = "2.0" project_hash = "2b5468733928aa070f986f4a033a7c17c5e845bc" [[deps.ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.2.5" [[deps.ARFFFiles]] deps = ["CategoricalArrays", "Dates", "Parsers", "Tables"] @@ -17,49 +17,42 @@ version = "1.4.1" [[deps.AbstractAlgebra]] deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "452aada15b5b38f1f327990c34a088517359dabe" +git-tree-sha1 = "e0cf629808a64842d2b133f7b5c492dc6580f16e" uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.30.7" +version = "0.34.5" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" -weakdeps = ["ChainRulesCore"] +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractLattices]] +git-tree-sha1 = "222ee9e50b98f51b5d78feb93dd928880df35f06" +uuid = "398f06c4-4d28-53ec-89ca-5b2656b7603d" +version = "0.3.0" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "a21654aa796bcc993284dace0d17d1022774c0a3" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "63ae0647e8db221d63256820d1e346216c65ac66" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.1" +version = "5.0.0" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" -[[deps.Accessors]] -deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "Test"] -git-tree-sha1 = "2b301c2388067d655fe5e4ca6d4aa53b61f895b4" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.31" -weakdeps = ["AxisKeys", "IntervalSets", "StaticArrays", "StructArrays"] - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -67,9 +60,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3bf24030e85b1d6d298e4f483f6aeff6f38462db" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.4.6" +version = "0.6.1" weakdeps = ["CUDA", "MCMCChains", "OrdinaryDiffEq"] [deps.AdvancedHMC.extensions] @@ -100,9 +93,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "917286faa2abb288796e75b88ca67edc016f3219" +git-tree-sha1 = "bbec08a37f8722786d87bedf84eae19c020c4efa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.5" +version = "7.7.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -120,17 +113,15 @@ version = "7.4.5" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "4efc22e4c299e49995a38d503d9dbb0544a37838" +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "b08a4043e1c14096ef8efe4dd97e07de5cacf240" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.0.4" +version = "1.4.5" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -142,15 +133,16 @@ uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" version = "0.1.0" [[deps.AutoHashEquals]] -git-tree-sha1 = "45bb6705d93be619b81451bb2006b7ee5d4e4453" +deps = ["Pkg"] +git-tree-sha1 = "daaeb6f7f77b88c072a83a2451801818acb5c63b" uuid = "15f4f7f2-30c1-5605-9d31-71845cf9641f" -version = "0.2.0" +version = "2.1.0" [[deps.Automa]] -deps = ["Printf", "ScanByte", "TranscodingStreams"] -git-tree-sha1 = "d50976f217489ce799e366d9561d56a98a30d7fe" +deps = ["PrecompileTools", "TranscodingStreams"] +git-tree-sha1 = "0da671c730d79b8f9a88a391556ec695ea921040" uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" -version = "0.8.2" +version = "1.0.2" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -160,15 +152,15 @@ version = "1.0.1" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "1dd4d9f5beebac0c03446918741b1a03dc5e5788" +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.6" +version = "0.4.7" [[deps.AxisKeys]] deps = ["AbstractFFTs", "ChainRulesCore", "CovarianceEstimation", "IntervalSets", "InvertedIndices", "LazyStack", "LinearAlgebra", "NamedDims", "OffsetArrays", "Statistics", "StatsBase", "Tables"] -git-tree-sha1 = "f1f6c24c1be95d4baa0880903641fa4a15e06d9c" +git-tree-sha1 = "dba0fdaa3a95e591aa9cbe0df9aba41e295a2011" uuid = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" -version = "0.2.12" +version = "0.2.13" [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] @@ -182,16 +174,20 @@ uuid = "fbb218c0-5317-5bc6-957e-2ee96dd4b1f0" version = "0.3.7" [[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"] -git-tree-sha1 = "b18febf0a34ba9192fdcd4fd2c57b535a48d3dd4" +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.24" +version = "1.4.0" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "54b00d1b93791f8e19e31584bd30f2cb6004614b" +git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.38" +version = "0.3.39" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -217,14 +213,19 @@ version = "0.1.1" [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8" +git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.3.2" +version = "1.4.0" [[deps.Bijections]] -git-tree-sha1 = "fe4f8c5ee7f76f2198d5c2a06d3961c249cce7bd" +git-tree-sha1 = "c9b163bd832e023571e86d0b90d9de92a9879088" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.4" +version = "0.1.6" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] @@ -233,10 +234,18 @@ uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.5" [[deps.BoundaryValueDiffEq]] -deps = ["BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase", "SparseArrays"] -git-tree-sha1 = "ed8e837bfb3d1e3157022c9636ec1c722b637318" +deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "ForwardDiff", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "Tricks", "TruncatedStacktraces", "UnPack"] +git-tree-sha1 = "dd234c9a030350d5ff4c45761d6cad0cfb358cb9" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "2.11.0" +version = "5.6.0" + + [deps.BoundaryValueDiffEq.extensions] + BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" + BoundaryValueDiffEqOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.BoundaryValueDiffEq.weakdeps] + ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -245,19 +254,31 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928" +git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.3" +version = "0.2.4" [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" +[[deps.CRlibm]] +deps = ["CRlibm_jll"] +git-tree-sha1 = "32abd86e3c2025db5172aa182b982debed519834" +uuid = "96374032-68de-5a5b-8d9e-752f78720389" +version = "1.0.1" + +[[deps.CRlibm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "e329286945d0cfc04456972ea732551869af1cfc" +uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0" +version = "1.0.1+0" + [[deps.CSTParser]] deps = ["Tokenize"] git-tree-sha1 = "3ddd48d200eb8ddf9cb3e0189fc059fd49b97c1f" @@ -266,21 +287,26 @@ version = "3.3.6" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "ed28c86cbde3dc3f53cf76643c2e9bc11d56acc7" +git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.10" +version = "0.10.11" [[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "beb01266a709235d8d9be1382d695a25f0b75bd3" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "76582ae19006b1186e87dadd781747f76cead72c" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.3.0" +version = "5.1.1" +weakdeps = ["ChainRulesCore", "SpecialFunctions"] + + [deps.CUDA.extensions] + ChainRulesCoreExt = "ChainRulesCore" + SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b" +git-tree-sha1 = "1e42ef1bdb45487ff28de16182c0df4920181dc3" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.5.0+1" +version = "0.7.0+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -290,15 +316,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29" +git-tree-sha1 = "9704e50c9158cf8896c2776b8dbc5edd136caf80" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.6.0+0" - -[[deps.CUDNN_jll]] -deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "2918fbffb50e3b7a0b9127617587afa76d4276e8" -uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.8.1+0" +version = "0.10.1+0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -313,10 +333,16 @@ uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" [[deps.Catalyst]] -deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Graphs", "JumpProcesses", "LaTeXStrings", "Latexify", "MacroTools", "ModelingToolkit", "Parameters", "Reexport", "Requires", "SparseArrays", "SymbolicUtils", "Symbolics", "Unitful"] -git-tree-sha1 = "1478271328ff9223e0db5d19e3a1a0643ba5ed35" +deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Graphs", "JumpProcesses", "LaTeXStrings", "Latexify", "LinearAlgebra", "MacroTools", "ModelingToolkit", "Parameters", "Reexport", "Requires", "SparseArrays", "SymbolicUtils", "Symbolics", "Unitful"] +git-tree-sha1 = "8e7e57c2ed4ecfb798f5a8cb230a9dd84765e7b1" uuid = "479239e8-5488-4da2-87a7-35f2df7eef83" -version = "13.3.0" +version = "13.5.1" + + [deps.Catalyst.extensions] + CatalystHomotopyContinuationExtension = "HomotopyContinuation" + + [deps.Catalyst.weakdeps] + HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" [[deps.CategoricalArrays]] deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] @@ -333,31 +359,39 @@ weakdeps = ["JSON", "RecipesBase", "SentinelArrays", "StructTypes"] [[deps.CategoricalDistributions]] deps = ["CategoricalArrays", "Distributions", "Missings", "OrderedCollections", "Random", "ScientificTypes"] -git-tree-sha1 = "da68989f027dcefa74d44a452c9e36af9730a70d" +git-tree-sha1 = "3124343a1b0c9a2f5fdc1d9bcc633ba11735a4c4" uuid = "af321ab8-2d2e-40a6-b165-3d674595d28e" -version = "0.1.10" +version = "0.1.13" weakdeps = ["UnicodePlots"] [deps.CategoricalDistributions.extensions] UnivariateFiniteDisplayExt = "UnicodePlots" [[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "8bae903893aeeb429cf732cf1888490b93ecf265" +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.49.0" +version = "1.58.1" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "2118cb2765f8197b08e5958cdd17c165427425ee" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.19.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "f84967c4497e0e1955f9a582c232b02847c5f589" +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.7" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -367,15 +401,15 @@ version = "0.1.12" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "d730914ef30a06732bdd9f763f6cc32e92ffbff1" +git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.1" +version = "1.3.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.1" +version = "0.7.3" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -385,9 +419,9 @@ version = "0.4.0" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "be6ab11021cd29f0344d5c4357b163af05a48cba" +git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.21.0" +version = "3.24.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -419,9 +453,9 @@ uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" version = "0.8.12" [[deps.CommonSolve]] -git-tree-sha1 = "9441451ee712d1aec22edad62db1a9af3dc8d852" +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.3" +version = "0.2.4" [[deps.CommonSubexpressions]] deps = ["MacroTools", "Test"] @@ -431,9 +465,9 @@ version = "0.3.0" [[deps.Compat]] deps = ["UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.10.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -442,7 +476,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.2+0" +version = "1.0.5+1" [[deps.CompositeTypes]] git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638" @@ -463,6 +497,17 @@ git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.3.0" + [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" @@ -471,9 +516,9 @@ version = "0.1.2" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "738fec4d684a9a6ee9598a8bfee305b26831f28c" +git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.2" +version = "1.5.4" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -491,11 +536,17 @@ git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.2" +[[deps.Copulas]] +deps = ["Cubature", "Distributions", "ForwardDiff", "GSL", "MvNormalCDF", "Random", "Roots", "SpecialFunctions", "StatsBase", "TaylorSeries"] +git-tree-sha1 = "f2964e01ce7c1b12d1300e08b44997b1bba76fc7" +uuid = "ae264745-0b69-425e-9d9d-cf662c5eec93" +version = "0.1.13" + [[deps.CovarianceEstimation]] deps = ["LinearAlgebra", "Statistics", "StatsBase"] -git-tree-sha1 = "3c8de95b4e932d76ec8960e12d681eba580e9674" +git-tree-sha1 = "9a44ddc9e60ee398934b73a5168f5806989e6792" uuid = "587fd27a-f159-11e8-2dae-1979310e6154" -version = "0.2.8" +version = "0.2.11" [[deps.CpuId]] deps = ["Markdown"] @@ -508,6 +559,18 @@ git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" +[[deps.Cubature]] +deps = ["Cubature_jll"] +git-tree-sha1 = "c3f4b3b38abd7b5c3ccf59adab2568212e7530d3" +uuid = "667455a9-e2ce-5579-9412-b964f529a492" +version = "1.5.1" + +[[deps.Cubature_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0fe9efb84e3eb7b14f885a95aaa0ed50c7e839c8" +uuid = "7bc98958-0e37-5d67-a6ac-a3a19030071a" +version = "1.0.5+0" + [[deps.DataAPI]] git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -515,39 +578,40 @@ version = "1.15.0" [[deps.DataDrivenDiffEq]] deps = ["CommonSolve", "DataInterpolations", "DiffEqBase", "DocStringExtensions", "LinearAlgebra", "MLUtils", "ModelingToolkit", "Parameters", "ProgressMeter", "QuadGK", "Random", "RecipesBase", "Reexport", "Setfield", "Statistics", "StatsBase", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "b91afb2a66627f7c24c6f972295292161f09768b" +git-tree-sha1 = "912924cc547e80f65e1a581d68e4a604e6b32bd3" uuid = "2445eb08-9709-466a-b3fc-47e12bd697a2" -version = "1.2.0" +version = "1.3.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.5.0" +version = "1.6.1" [[deps.DataInterpolations]] -deps = ["LinearAlgebra", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"] -git-tree-sha1 = "e52a7c2388471ca6e7e6dcd68c98073f378b8967" +deps = ["LinearAlgebra", "PrettyTables", "RecipesBase", "Reexport", "Requires"] +git-tree-sha1 = "99f979d5e9b67c2aeee701c3683037ac8d75bdd6" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "4.0.1" +version = "4.6.0" [deps.DataInterpolations.extensions] DataInterpolationsChainRulesCoreExt = "ChainRulesCore" - DataInterpolationsOptimExt = "Optim" + DataInterpolationsOptimExt = ["ForwardDiff", "Optim"] DataInterpolationsRegularizationToolsExt = "RegularizationTools" DataInterpolationsSymbolicsExt = "Symbolics" [deps.DataInterpolations.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Optim = "429524aa-4258-5aef-a3af-852621145aeb" RegularizationTools = "29dad682-9a27-4bc3-9c72-016788665182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.15" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -563,11 +627,17 @@ git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" +[[deps.DelaunayTriangulation]] +deps = ["DataStructures", "EnumX", "ExactPredicates", "Random", "SimpleGraphs"] +git-tree-sha1 = "26eb8e2331b55735c3d305d949aabd7363f07ba7" +uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" +version = "0.8.11" + [[deps.DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "89f3fbfe78f9d116d1ed0721d65b0b2cf9b36169" +git-tree-sha1 = "e40378efd2af7658d0a0579aa9e15b17137368f4" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.42.0" +version = "5.44.0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -576,13 +646,15 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "1c03e389a28be70cd9049f98ff0b84cf7539d959" +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "e2e4e794fb1f7d53acfd307473e6261c4ab7da2e" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.125.0" +version = "6.144.0" [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -590,10 +662,11 @@ version = "6.125.0" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -601,19 +674,19 @@ version = "6.125.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "63b6be7b396ad395825f3cc48c56b53bfaf7e69d" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "d0b94b3694d55e7eedeee918e7daee9e3b873399" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.26.1" +version = "2.35.0" +weakdeps = ["OrdinaryDiffEq", "Sundials"] [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] -git-tree-sha1 = "2c4ed3eedb87579bfe9f20ecc2440de06b9f3b89" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "319377c927a4aa1f491228b2ac23f3554a3497c6" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.16.0" +version = "5.20.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -629,21 +702,26 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.13.0" +version = "1.15.1" [[deps.DifferentialEquations]] deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] -git-tree-sha1 = "ac145e3d718157c679fc4febf2fcef73ec77b067" +git-tree-sha1 = "19a5b6314715139ddefea4108a105bb9b90dc4fb" uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -version = "7.7.0" +version = "7.11.0" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.8" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -651,23 +729,25 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.DistributedArrays]] deps = ["Distributed", "LinearAlgebra", "Primes", "Random", "Serialization", "SparseArrays", "Statistics"] -git-tree-sha1 = "8b73f8289d73306e3fc04e8622a2db562e01cd07" +git-tree-sha1 = "8a2950a2a7fcc87d9d9f07433a96bfa70394a3e6" uuid = "aaf54ef3-cdf8-58ed-94cc-d582ad619b94" -version = "0.6.6" +version = "0.6.7" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "9242eec9b7e2e14f9952e8ea1c7e31a50501d587" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.104" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -677,9 +757,9 @@ version = "0.9.3" [[deps.DomainSets]] deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays", "Statistics"] -git-tree-sha1 = "698124109da77b6914f64edd696be8dccf90229e" +git-tree-sha1 = "51b4b84d33ec5e0955b55ff4b748b99ce2c3faa9" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.6.6" +version = "0.6.7" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -693,10 +773,10 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPolynomials]] -deps = ["DataStructures", "Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "8b84876e31fa39479050e2d3395c4b3b210db8b0" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] +git-tree-sha1 = "fea68c84ba262b121754539e6ea0546146515d4f" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.4.6" +version = "0.5.3" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -712,54 +792,71 @@ version = "0.3.0" [[deps.EllipsisNotation]] deps = ["StaticArrayInterface"] -git-tree-sha1 = "d89f0d98f6296a08b73fdfed559f8e86f871cc06" +git-tree-sha1 = "3507300d4343e8e4ad080ad24e335274c2e297a9" uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" -version = "1.7.0" +version = "1.8.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[deps.EnzymeCore]] +deps = ["Adapt"] +git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.6.4" + +[[deps.ErrorfreeArithmetic]] +git-tree-sha1 = "d6863c556f1142a061532e79f611aa46be201686" +uuid = "90fa49ef-747e-5e6f-a989-263ba693cf1a" +version = "0.5.2" + +[[deps.ExactPredicates]] +deps = ["IntervalArithmetic", "Random", "StaticArraysCore", "Test"] +git-tree-sha1 = "276e83bc8b21589b79303b9985c321024ffdf59c" +uuid = "429591f6-91af-11e9-00e2-59fbe8cec110" +version = "2.2.5" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "fb7dbef7d2631e2d02c49e2750f7447648b0ec9b" +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "602e4585bcbd5a25bc06f514724593d13ff9e862" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.24.0" +version = "1.25.0" [[deps.ExprTools]] -git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.9" +version = "0.1.10" [[deps.Extents]] -git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99" +git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.1" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.1.2" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" +git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.6.0" +version = "1.7.2" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -779,11 +876,17 @@ git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" version = "0.1.1" +[[deps.FastAlmostBandedMatrices]] +deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] +git-tree-sha1 = "178316d87f883f0702e79d9c83a8049484c9f619" +uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" +version = "0.1.0" + [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "d1248fceea0b26493fd33e8e9e8c553270da03bd" +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.5" +version = "0.2.8" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -798,9 +901,15 @@ version = "0.5.1" [[deps.FastLapackInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "c1293a93193f0ae94be7cf338d33e162c39d8788" +git-tree-sha1 = "b12f05108e405dadcc2aff0008db7f831374e051" uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "1.2.9" +version = "2.0.0" + +[[deps.FastRounding]] +deps = ["ErrorfreeArithmetic", "LinearAlgebra"] +git-tree-sha1 = "6344aa18f654196be82e62816935225b3b9abe44" +uuid = "fa42c844-2597-5d31-933b-ebd51ab2693f" +version = "0.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] @@ -810,24 +919,30 @@ version = "1.16.1" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.20" +version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "ed569cb9e7e3590d5ba884da7edc50216aac5811" +deps = ["LinearAlgebra", "Random"] +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.1.0" +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "abfd952bdf92f6d7195c45dc46d50043bd0d7dbe" +git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.0" +version = "2.21.1" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -846,22 +961,22 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Flux]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote", "cuDNN"] -git-tree-sha1 = "64005071944bae14fc145661f617eb68b339189c" +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "75e3b3732929e880e7fd121e8a4e4dd5e1bfeaee" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.16" +version = "0.14.7" [deps.Flux.extensions] - AMDGPUExt = "AMDGPU" + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxMetalExt = "Metal" [deps.Flux.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - -[[deps.FoldsThreads]] -deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] -git-tree-sha1 = "eb8e1989b9028f7e0985b4268dabe94682249025" -uuid = "9c68100b-dfe1-47cf-94c8-95104e173443" -version = "0.1.1" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] @@ -877,9 +992,9 @@ version = "0.4.2" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.35" +version = "0.10.36" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -887,15 +1002,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] -git-tree-sha1 = "cabd77ab6a6fdff49bfd24af2ebe76e6e018a2b4" +git-tree-sha1 = "907369da0f8e80728ab49c1c7e09327bf0d6d999" uuid = "b38be410-82b0-50bf-ab77-7b57e271db43" -version = "4.0.0" +version = "4.1.1" [[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.4+0" +version = "2.13.1+0" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] @@ -922,9 +1037,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "478f8c3145bb91d82c2cf20433e8c1b30df454cc" +git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.4" +version = "0.4.5" [[deps.Future]] deps = ["Random"] @@ -932,27 +1047,39 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "97829cfda0df99ddaeaafb5b370d6cab87b7013e" +git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.3" +version = "1.9.0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "9ade6983c3dbbd492cf5729f865fe030d1541463" +git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.6" +version = "9.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" +git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.4" +version = "0.1.5" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "11b2d77f29a85f3649c273a38f6618121c6b1c51" +git-tree-sha1 = "a846f297ce9d09ccba02ead0cae70690e072a119" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.20.2" +version = "0.25.0" + +[[deps.GSL]] +deps = ["GSL_jll", "Libdl", "Markdown"] +git-tree-sha1 = "3ebd07d519f5ec318d5bc1b4971e2472e14bd1f0" +uuid = "92c85e6c-cbff-5e0c-80f7-495c94daaecd" +version = "1.0.1" + +[[deps.GSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "56f1e2c9e083e0bb7cf9a7055c280beb08a924c0" +uuid = "1b77fbbe-d8ee-58f0-85f9-836ddc23a7a4" +version = "2.7.2+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -968,15 +1095,15 @@ version = "0.5.3" [[deps.GeoInterface]] deps = ["Extents"] -git-tree-sha1 = "bb198ff907228523f3dee1070ceee63b9359b6ab" +git-tree-sha1 = "d53480c0793b13341c40199190f92c611aa2e93c" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.1" +version = "1.3.2" [[deps.GeometryBasics]] -deps = ["EarCut_jll", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "659140c9375afa2f685e37c1a0b9c9a60ef56b40" +deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] +git-tree-sha1 = "424a5a6ce7c5d97cca7bcc4eac551b97294c54af" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.7" +version = "0.4.9" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -985,10 +1112,10 @@ uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "d3b3624125c1474292d0d8ed0f65554ac37ddb23" +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.74.0+2" +version = "2.76.5+0" [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" @@ -996,10 +1123,10 @@ uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.1" [[deps.GlobalSensitivity]] -deps = ["Distributions", "FFTW", "ForwardDiff", "KernelDensity", "LinearAlgebra", "Parameters", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Statistics", "StatsBase", "Trapz"] -git-tree-sha1 = "e44cdbdc5ee2c4417be3ae244c84de6a6c4eab44" +deps = ["Combinatorics", "Copulas", "Distributions", "FFTW", "ForwardDiff", "KernelDensity", "LinearAlgebra", "Parameters", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Statistics", "StatsBase", "ThreadsX", "Trapz"] +git-tree-sha1 = "e155cea640a5792f50c465c70da1dd7083eba8ba" uuid = "af5da776-676b-467e-8baf-acd8249e4f0f" -version = "2.1.4" +version = "2.4.0" [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] @@ -1015,15 +1142,15 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "678d136003ed5bceaab05cf64519e3f956ffa4ba" +git-tree-sha1 = "f57a64794b336d4990d90f80b147474b869b1bc4" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.9.1" +version = "0.9.2" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1031,16 +1158,16 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.Groebner]] -deps = ["AbstractAlgebra", "Combinatorics", "Logging", "MultivariatePolynomials", "Primes", "Random", "SnoopPrecompile"] -git-tree-sha1 = "06022d793870e05b9cb34046125539f43d289f51" +deps = ["AbstractAlgebra", "Combinatorics", "ExprTools", "Logging", "MultivariatePolynomials", "PrecompileTools", "PrettyTables", "Primes", "Printf", "Random", "SIMD", "TimerOutputs"] +git-tree-sha1 = "6b505ef15e55bdc5bb3ddbcfebdff1c9e67081e8" uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4" -version = "0.3.5" +version = "0.5.1" [[deps.GroupsCore]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9e1a5e9f3b81ad6a5c613d181664a0efc6fe6dd7" +git-tree-sha1 = "6df9cd6ee79fc59feab33f63a1b3c9e95e2461d5" uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120" -version = "0.4.0" +version = "0.4.2" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] @@ -1049,22 +1176,26 @@ uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" version = "1.5.1" [[deps.HDF5]] -deps = ["Compat", "HDF5_jll", "Libdl", "Mmap", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "c73fdc3d9da7700691848b78c61841274076932a" +deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.16.15" +version = "0.17.1" +weakdeps = ["MPI"] + + [deps.HDF5.extensions] + MPIExt = "MPI" [[deps.HDF5_jll]] -deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenSSL_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "4cc2bb72df6ff40b055295fdef6d92955f9dede8" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.12.2+2" +version = "1.14.2+1" [[deps.HTTP]] -deps = ["Base64", "Dates", "IniFile", "Logging", "MbedTLS", "NetworkOptions", "Sockets", "URIs"] -git-tree-sha1 = "0fa77022fe4b511826b39c894c90daf5fce3334a" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "abbbb9ec3afd783a7cbd82ef01dcd088ea051398" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "0.9.17" +version = "1.10.1" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -1074,27 +1205,33 @@ version = "2.8.1+1" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "734fd90dd2f920a2f1921d5388dcebe805b262dc" +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.14" +version = "0.1.16" + +[[deps.Hwloc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" +version = "2.10.0+0" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "84204eae2dd237500835990bcade263e27674a93" +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.16" +version = "0.3.23" [[deps.HypothesisTests]] -deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Random", "Rmath", "Roots", "Statistics", "StatsBase"] -git-tree-sha1 = "fee0691e3336a71503dada09ed61bed786b0f59f" +deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Printf", "Random", "Rmath", "Roots", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "4b5d5ba51f5f473737ed9de6d8a7aa190ad8c72f" uuid = "09f84164-cd44-5f33-b23f-e6b0d136a0d5" -version = "0.10.13" +version = "0.11.0" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.11" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -1103,9 +1240,9 @@ version = "0.1.1" [[deps.ImageAxes]] deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] -git-tree-sha1 = "c54b581a83008dc7f292e205f4c409ab5caa0f04" +git-tree-sha1 = "2e4520d67b0cef90865b3ef727594d2a58e0e1f8" uuid = "2803e5a7-5153-5ecf-9a86-9b4c37f5f5ac" -version = "0.6.10" +version = "0.6.11" [[deps.ImageBase]] deps = ["ImageCore", "Reexport"] @@ -1121,15 +1258,15 @@ version = "0.9.4" [[deps.ImageIO]] deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] -git-tree-sha1 = "342f789fd041a55166764c351da1710db97ce0e0" +git-tree-sha1 = "bca20b2f5d00c4fbc192c3212da8fa79f4688009" uuid = "82e4d734-157c-48bb-816b-45c225c6df19" -version = "0.6.6" +version = "0.6.7" [[deps.ImageMetadata]] deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"] -git-tree-sha1 = "36cbaebed194b292590cba2593da27b34763804a" +git-tree-sha1 = "355e2b974f2e3212a75dfb60519de21361ad3cb7" uuid = "bc367c6b-8a6b-528e-b4bd-a4b897500b49" -version = "0.9.8" +version = "0.9.9" [[deps.Imath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1143,14 +1280,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" - -[[deps.IniFile]] -git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" -uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" -version = "0.5.1" +version = "0.1.4" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -1170,27 +1302,36 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntegerMathUtils]] -git-tree-sha1 = "f366daebdfb079fd1fe4e3d560f99a0c892e15bc" +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.0" +version = "0.1.2" [[deps.Integrals]] deps = ["CommonSolve", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Reexport", "Requires", "SciMLBase"] -git-tree-sha1 = "f8f24a73621e9063f696ffeaa83f7a725ab5ae23" +git-tree-sha1 = "b743351245d6afa34ef470711150969d86e8a46c" uuid = "de52edbc-65ea-441a-8357-d3a637375a31" -version = "3.8.0" -weakdeps = ["ChainRulesCore", "FastGaussQuadrature", "ForwardDiff", "Zygote"] +version = "4.1.0" [deps.Integrals.extensions] + IntegralsCubaExt = "Cuba" + IntegralsCubatureExt = "Cubature" IntegralsFastGaussQuadratureExt = "FastGaussQuadrature" IntegralsForwardDiffExt = "ForwardDiff" IntegralsZygoteExt = ["Zygote", "ChainRulesCore"] + [deps.Integrals.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Cuba = "8a292aeb-7a57-582c-b821-06e4c11590b1" + Cubature = "667455a9-e2ce-5579-9412-b964f529a492" + FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0cb9352ef2e01574eeebdb102948a58740dcaf83" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.1.0+0" +version = "2024.0.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -1198,21 +1339,35 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "274ad8005db8b4ef6cc46d1392927083405813c2" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.0" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalArithmetic]] +deps = ["CRlibm", "FastRounding", "LinearAlgebra", "Markdown", "Random", "RecipesBase", "RoundingEmulator", "SetRounding", "StaticArrays"] +git-tree-sha1 = "5ab7744289be503d76a944784bac3f2df7b809af" +uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" +version = "0.20.9" [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] -git-tree-sha1 = "16c0cc91853084cb5f58a78bd209513900206ce6" +deps = ["Dates", "Random"] +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.4" +version = "0.7.8" +weakdeps = ["Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "6667aadd1cdee2c6cd068128b3d226ebc4fb0c67" +git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.9" +version = "0.1.12" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -1231,9 +1386,9 @@ uuid = "f1662d9f-8043-43de-a69a-05efc1cc6ff4" version = "0.1.1" [[deps.IterTools]] -git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" +git-tree-sha1 = "274c38bd733f9d29036d0a73658fff1dc1d3a065" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.4.0" +version = "1.9.0" [[deps.IterationControl]] deps = ["EarlyStopping", "InteractiveUtils"] @@ -1241,22 +1396,22 @@ git-tree-sha1 = "d7df9a6fdd82a8cfdfe93a94fcce35515be634da" uuid = "b3c1a2ee-3fec-4384-bf48-272ea71de57c" version = "0.5.3" -[[deps.IterativeSolvers]] -deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] -git-tree-sha1 = "1169632f425f79429f245113b775a0e3d121457c" -uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.9.2" - [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLD2]] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] +git-tree-sha1 = "133263d48b027e7b1e3ead5e67e6d99d6846efb4" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.4.39" + [[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" +version = "1.5.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1265,34 +1420,46 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" [[deps.JSON3]] -deps = ["Dates", "Mmap", "Parsers", "SnoopPrecompile", "StructTypes", "UUIDs"] -git-tree-sha1 = "84b10656a41ef564c39d2d477d7236966d2b5683" +deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] +git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.12.0" +version = "1.14.0" + + [deps.JSON3.extensions] + JSON3ArrowExt = ["ArrowTypes"] + + [deps.JSON3.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] -git-tree-sha1 = "106b6aa272f294ba47e96bd3acbabdc0407b5c60" +git-tree-sha1 = "fa6d0bcff8583bac20f1ffa708c3913ca605c611" uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" -version = "0.1.2" +version = "0.1.5" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.1+0" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "832629821a3c64bbabb8ad7f31fd62a37aad27be" +git-tree-sha1 = "8f5295e46f594ad2d8652f1098488a77460080cd" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.31" +version = "1.0.45" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "6a125e6a4cb391e0b9adbd1afa9e771c2179f8ef" +git-tree-sha1 = "e49bce680c109bc86e3e75ebcb15040d6ad9e1d3" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.23" +version = "0.9.27" + +[[deps.JuliaNVTXCallbacks_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" +uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" +version = "0.2.1+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -1301,46 +1468,48 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "50bd271af7f6cc23be7d24c8c4804809bb5d05ae" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.6.3" +version = "9.10.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "764164ed65c30738750965d55652db9c94c59bfe" +git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.4.0" +version = "0.4.1" [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "81de11f7b02465435aab0ed7e935965bfcb3072b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.14" +weakdeps = ["EnzymeCore"] + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.Kronecker]] deps = ["LinearAlgebra", "NamedDims", "SparseArrays", "StatsBase"] -git-tree-sha1 = "78d9909daf659c901ae6c7b9de7861ba45a743f4" +git-tree-sha1 = "9253429e28cceae6e823bec9ffde12460d79bb38" uuid = "2c470bb0-bcc8-11e8-3dad-c9649493f05e" -version = "0.5.3" +version = "0.5.5" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "0356a64062656b0cbb43c504ad5de338251f4bda" +git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.1" - -[[deps.KrylovKit]] -deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"] -git-tree-sha1 = "1a5e1d9941c783b0119897d29f2eb665d876ecf3" -uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" -version = "0.6.0" +version = "0.9.5" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1349,16 +1518,25 @@ uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.1+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "26a31cdd9f1f4ea74f649a7bf249703c687a953d" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "0678579657515e88b6632a3a482d39adcbb80445" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.1.0" +version = "6.4.1" +weakdeps = ["BFloat16s"] + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "09b7505cc0b1cee87e5d4a26eea61d2e1b0dcd35" +git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.21+0" +version = "0.0.27+1" + +[[deps.LLVMLoopInfo]] +git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" +uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586" +version = "1.0.0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1373,15 +1551,15 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.LabelledArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "cd04158424635efd05ff38d5f55843397b7416a9" +git-tree-sha1 = "f12f2225c999886b69273f84713d1b9cb66faace" uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.14.0" +version = "1.15.0" [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" @@ -1390,9 +1568,9 @@ version = "0.4.6" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "099e356f267354f46ba65087981a77da23a279b7" +git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.0" +version = "0.16.1" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1416,9 +1594,9 @@ version = "0.0.1" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -1426,6 +1604,16 @@ git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" version = "0.15.1" +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.8.3" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1441,6 +1629,12 @@ git-tree-sha1 = "2eb4a5bf2eb0519ebf40c797ba5637d327863637" uuid = "1fad7336-0346-5a1a-a56f-a06ba010965b" version = "0.0.8" +[[deps.LearnAPI]] +deps = ["InteractiveUtils", "Statistics"] +git-tree-sha1 = "ec695822c1faaaa64cee32d0b21505e1977b4809" +uuid = "92ad9a40-7767-427a-9ee6-6e577f1266cb" +version = "0.1.0" + [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" @@ -1461,16 +1655,21 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.0.1+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1494,10 +1693,10 @@ uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" version = "1.42.0+0" [[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+2" +version = "1.17.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1513,9 +1712,9 @@ version = "2.36.0+0" [[deps.LightXML]] deps = ["Libdl", "XML2_jll"] -git-tree-sha1 = "e129d9391168c677cd4800f5c0abb1ed8cb3794f" +git-tree-sha1 = "3a994404d3f6709610701c7dabfc03fed87a81f8" uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" -version = "0.9.0" +version = "0.9.1" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] @@ -1527,29 +1726,64 @@ version = "7.2.0" deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +[[deps.LinearAlgebraX]] +deps = ["LinearAlgebra", "Mods", "Permutations", "Primes", "SimplePolynomials"] +git-tree-sha1 = "89ed93300377e0742ae8a7423f7543c8f5eb73a4" +uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" +version = "0.2.5" + [[deps.LinearMaps]] -deps = ["ChainRulesCore", "LinearAlgebra", "SparseArrays", "Statistics"] -git-tree-sha1 = "4af48c3585177561e9f0d24eb9619ad3abf77cc7" +deps = ["LinearAlgebra"] +git-tree-sha1 = "9df2ab050ffefe870a09c7b6afdb0cde381703f2" uuid = "7a12625a-238d-50fd-b39a-03d52299707e" -version = "3.10.0" +version = "3.11.1" +weakdeps = ["ChainRulesCore", "SparseArrays", "Statistics"] + + [deps.LinearMaps.extensions] + LinearMapsChainRulesCoreExt = "ChainRulesCore" + LinearMapsSparseArraysExt = "SparseArrays" + LinearMapsStatisticsExt = "Statistics" [[deps.LinearSolve]] -deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "4a4f8cc7a59fadbb02d1852d1e0cef5dca3a9460" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "b1148a6596c5cd9b2d848c26b500c79d102ffc5d" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.42.0" +version = "2.21.1" [deps.LinearSolve.extensions] - LinearSolveHYPRE = "HYPRE" + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.Loess]] deps = ["Distances", "LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "9d6df360b25c452d7f98ebde57b7a84e9b6b8f67" +git-tree-sha1 = "a113a8be4c6d0c64e217b472fb6e61c760eb4022" uuid = "4345ca2d-374a-55d4-8d30-97f9976e7612" -version = "0.6.0" +version = "0.6.3" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] @@ -1559,11 +1793,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1573,6 +1808,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1583,9 +1819,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" +git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.23" +version = "0.3.26" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1598,74 +1834,85 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.0" +version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "3bb62b5003bc7d2d49f26663484267dc49fa1bf5" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.159" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] SpecialFunctionsExt = "SpecialFunctions" -[[deps.LossFunctions]] -deps = ["CategoricalArrays", "Markdown", "Statistics"] -git-tree-sha1 = "44a7bfeb7b5eb9386a62b9cccc6e21f406c15bea" -uuid = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7" -version = "0.10.0" - [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 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[[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1758,16 +2027,16 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" [[deps.MLUtils]] -deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "ca31739905ddb08c59758726e22b9e25d0d1521b" +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.2" +version = "0.4.3" [[deps.MPI]] -deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = 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"Functors", "JLD2", "LazyArtifacts", "MLUtils", "NNlib", "PartialFunctions", "Random", "Statistics"] +git-tree-sha1 = "9ecbb04ec44bb292576064ace129ea0d92dee37a" uuid = "dbeba491-748d-5e0e-a39e-b530a07fa0cc" -version = "0.7.4" +version = "0.9.0" +weakdeps = ["CUDA"] + + [deps.Metalhead.extensions] + MetalheadCUDAExt = "CUDA" [[deps.MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] @@ -1869,15 +2143,9 @@ version = "0.1.4" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422" +git-tree-sha1 = "b01beb91d20b0d1312a9471a36017b5b339d26de" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.3+4" - -[[deps.MiniQhull]] -deps = ["QhullMiniWrapper_jll"] -git-tree-sha1 = "9dc837d180ee49eeb7c8b77bb1c860452634b0d1" -uuid = "978d7f02-9e05-4691-894f-ae31a51d76ca" -version = "0.4.0" +version = "10.1.4+1" [[deps.Missings]] deps = ["DataAPI"] @@ -1889,22 +2157,29 @@ version = "1.1.0" uuid = 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"DocStringExtensions", "DomainSets", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "IfElse", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "MacroTools", "NaNMath", "OrdinaryDiffEq", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "2f872327288342d1e3edc538484b4f317e3cf59c" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "8.56.0" +version = "8.73.2" [deps.ModelingToolkit.extensions] + MTKBifurcationKitExt = "BifurcationKit" MTKDeepDiffsExt = "DeepDiffs" [deps.ModelingToolkit.weakdeps] + BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" +[[deps.Mods]] +git-tree-sha1 = 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+git-tree-sha1 = "6ffb234d6d7c866a75c1879d2099049d3a35a83a" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.4.7" +version = "0.5.3" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "964cb1a7069723727025ae295408747a0b36a854" +git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.3.0" +version = "1.4.0" + +[[deps.MvNormalCDF]] +deps = ["Distributions", "FillArrays", "LinearAlgebra", "Primes", "Random", "StatsBase"] +git-tree-sha1 = "3d1e8f8e683e506d6fcd41104b3d791aa25d4286" +uuid = "37188c8d-bc69-4638-b057-733e744175ec" +version = "0.3.0" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1947,21 +2233,33 @@ version = "4.5.1" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "99e6dbb50d8a96702dc60954569e9fe7291cc55d" +git-tree-sha1 = "7c221293228506db2fe883251407581e0846688e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.20" +version = "0.9.9" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" [deps.NNlib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -[[deps.NNlibCUDA]] -deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] -git-tree-sha1 = "f94a9684394ff0d325cc12b06da7032d8be01aaf" -uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d" -version = "0.2.7" +[[deps.NVTX]] +deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] +git-tree-sha1 = "8bc9ce4233be3c63f8dcd78ccaf1b63a9c0baa34" +uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f" +version = "0.3.3" + +[[deps.NVTX_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ce3269ed42816bf18d500c9f63418d4b0d9f5a3b" +uuid = "e98f9f5b-d649-5603-91fd-7774390e6439" +version = "3.1.0+2" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1977,9 +2275,9 @@ version = "0.1.5" [[deps.NamedDims]] deps = ["AbstractFFTs", "ChainRulesCore", "CovarianceEstimation", "LinearAlgebra", "Pkg", "Requires", "Statistics"] -git-tree-sha1 = "cb8ebcee2b4e07b72befb9def593baef8aa12f07" +git-tree-sha1 = "dc9144f80a79b302b48c282ad29b1dc2f10a9792" uuid = "356022a1-0364-5f58-8944-0da4b18d706f" -version = "0.2.50" +version = "1.2.1" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1988,9 +2286,9 @@ version = "1.0.0" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] -git-tree-sha1 = "5ae7ca23e13855b3aba94550f26146c01d259267" +git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" -version = "1.1.0" +version = 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"2.8.2" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.Octavian]] -deps = ["CPUSummary", "IfElse", "LoopVectorization", "ManualMemory", "PolyesterWeave", "SnoopPrecompile", "Static", "StaticArrayInterface", "ThreadingUtilities", "VectorizationBase"] -git-tree-sha1 = "4f93ec8df071630eba0b7bd9e6474b54999b9432" +deps = ["CPUSummary", "IfElse", "LoopVectorization", "ManualMemory", "PolyesterWeave", "PrecompileTools", "Static", "StaticArrayInterface", "ThreadingUtilities", "VectorizationBase"] +git-tree-sha1 = "e046e337d567faf13634161c44d3d4223ccdadb8" uuid = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" -version = "0.3.22" -weakdeps = ["ForwardDiff"] +version = "0.3.27" [deps.Octavian.extensions] ForwardDiffExt = "ForwardDiff" + HyperDualNumbersExt = "HyperDualNumbers" + + [deps.Octavian.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + HyperDualNumbers = "50ceba7f-c3ee-5a84-a6e8-3ad40456ec97" [[deps.OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" +git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.9" +version = "1.12.10" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2037,14 +2349,14 @@ version = "1.3.5+1" [[deps.OneHotArrays]] deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "f511fca956ed9e70b80cd3417bb8c2dde4b68644" +git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.3" +version = "0.2.4" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+0" +version = "0.3.23+2" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -2061,7 +2373,7 @@ version = "3.1.4+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenML]] deps = ["ARFFFiles", "HTTP", "JSON", "Markdown", "Pkg", "Scratch"] @@ -2070,16 +2382,22 @@ uuid = "8b6db2d4-7670-4922-a472-f9537c81ab66" version = "0.3.1" [[deps.OpenMPI_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "PMIx_jll", "TOML", "Zlib_jll", "libevent_jll", "prrte_jll"] +git-tree-sha1 = "694458ae803b684f09c07f90459cb79655fb377d" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.5+0" +version = "5.0.0+0" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.1" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.20+0" +version = "3.0.12+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -2089,15 +2407,15 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "a89b11f0f354f06099e4001c151dffad7ebab015" +git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.5" +version = "1.7.8" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "6a01f65dd8583dee82eecc2a19b0ff21521aa749" +git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.18" +version = "0.3.1" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2106,21 +2424,21 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.0" +version = "1.6.3" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "7f758238ce4202ced5e08aa2903d19d3a4f0dd7c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "5f9e7ce227d0e447c3803cc05ef5d8f75f84b9ea" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.52.0" +version = "6.59.3" [[deps.P4est]] deps = ["CEnum", "MPI", "MPIPreferences", "P4est_jll", "Preferences", "Reexport", "UUIDs"] -git-tree-sha1 = "4024b3ff0b1b6887cecae0745b83d1c08874e011" +git-tree-sha1 = 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"32165bc3-0280-59bc-8c0b-c33b6203efab" +version = "4.2.7+0" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] -git-tree-sha1 = "f809158b27eba0c18c269cf2a2be6ed751d3e81d" +git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" -version = "0.3.17" +version = "0.4.3" [[deps.PSIS]] deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] -git-tree-sha1 = "72a16ef4d76e0cb071d704ff50dc086b6715d2f9" +git-tree-sha1 = "289528e9eace9ca764d8d22d38ecb51706dc9ef8" uuid = "ce719bf2-d5d0-4fb9-925d-10a81b42ad04" -version = "0.7.2" +version = "0.9.4" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] [[deps.Packing]] deps = ["GeometryBasics"] @@ -2171,9 +2501,9 @@ version = "0.12.3" [[deps.ParetoSmooth]] deps = ["AxisKeys", "LinearAlgebra", "LogExpFunctions", "MCMCDiagnosticTools", "NamedDims", "PrettyTables", "Printf", "Random", "Requires", "Statistics", "StatsBase"] -git-tree-sha1 = "f7378f21d2f41ef30405945c32b7d30af3dc9edf" +git-tree-sha1 = "b97ae6c84338a741976ffbd1687a6dbc1a78f609" uuid = "a68b5a21-f429-434e-8bfa-46b447300aac" -version = "0.7.6" +version = "0.7.7" [deps.ParetoSmooth.extensions] ParetoSmoothDynamicPPLExt = ["DynamicPPL", "MCMCChains"] @@ -2185,21 +2515,33 @@ version = "0.7.6" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "a5aef8d4a6e8d81f171b2bd4be5265b01384c74c" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.10" +version = "2.8.0" + +[[deps.PartialFunctions]] +deps = ["MacroTools"] +git-tree-sha1 = "47b49a4dbc23b76682205c646252c0f9e1eb75af" +uuid = "570af359-4316-4cb7-8c74-252c00c2016b" +version = "1.2.0" [[deps.PathIntersections]] deps = ["ForwardDiff", "GaussQuadrature", "LinearAlgebra", "SparseArrays", "StaticArrays", "StructArrays"] -git-tree-sha1 = "5957f6a65b3bb31004a753402d9da24b264244cd" +git-tree-sha1 = "b0eea8b5fbc2559a3f6805bcf6fd93a0d8373182" uuid = "4c1a95c7-462a-4a7e-b284-959c63fbf1dc" -version = "0.1.1" +version = "0.1.2" + +[[deps.Permutations]] +deps = ["Combinatorics", "LinearAlgebra", "Random"] +git-tree-sha1 = "c7745750b8a829bc6039b7f1f0981bcda526a946" +uuid = "2ae35dd2-176d-5d53-8349-f30d82d94d4f" +version = "0.4.19" [[deps.Pixman_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.40.1+0" +version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -2208,9 +2550,9 @@ version = "1.10.0" [[deps.PkgVersion]] deps = ["Pkg"] -git-tree-sha1 = "f6cf8e7944e50901594838951729a1861e668cb8" +git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" -version = "0.3.2" +version = "0.3.3" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] @@ -2226,9 +2568,9 @@ version = "0.4.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "0fe4e7c4d8ff4c70bfa507f0dd96fa161b115777" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.3" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2243,15 +2585,28 @@ version = "0.1.2" [[deps.PolynomialBases]] deps = ["ArgCheck", "AutoHashEquals", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Requires", "SimpleUnPack", "SpecialFunctions"] -git-tree-sha1 = "b6a02c79b22a5642eed205318da472ca57f4a7de" +git-tree-sha1 = "aa1877430a7e8b0c7a35ea095c415d462af0870f" uuid = "c74db56a-226d-5e98-8bb0-a6049094aeea" -version = "0.4.18" +version = "0.4.21" + +[[deps.Polynomials]] +deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"] +git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d" +uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" +version = "4.0.6" +weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"] + + [deps.Polynomials.extensions] + PolynomialsChainRulesCoreExt = "ChainRulesCore" + PolynomialsFFTWExt = "FFTW" + PolynomialsMakieCoreExt = "MakieCore" + PolynomialsMutableArithmeticsExt = "MutableArithmetics" [[deps.PooledArrays]] deps = ["DataAPI", "Future"] -git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7" +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.2" +version = "1.4.3" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -2261,9 +2616,9 @@ version = "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] -git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" +git-tree-sha1 = "01ac95fca7daabe77a9cb705862bd87016af9ddb" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.12" +version = "0.4.13" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -2273,15 +2628,15 @@ version = "0.4.12" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "259e206946c293698122f63e2b513a7c99a244e8" +git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.1.1" +version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1" +git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.0" +version = "1.4.1" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" @@ -2294,16 +2649,16 @@ uuid = "54e16d92-306c-5ea0-a30b-337be88ac337" version = "0.4.1" [[deps.PrettyTables]] -deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "213579618ec1f42dea7dd637a42785a608b1ea9c" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.4" +version = "2.3.1" [[deps.Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "311a2aa90a64076ea0fac2ad7492e914e6feeb81" +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.3" +version = "0.5.5" [[deps.Printf]] deps = ["Unicode"] @@ -2321,9 +2676,9 @@ version = "0.1.4" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" +git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.7.2" +version = "1.9.0" [[deps.ProvenanceBase]] deps = ["Dates"] @@ -2337,35 +2692,23 @@ git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65" version = "1.0.0" -[[deps.QhullMiniWrapper_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Qhull_jll"] -git-tree-sha1 = "607cf73c03f8a9f83b36db0b86a3a9c14179621f" -uuid = "460c41e3-6112-5d7f-b78c-b6823adb3f2d" -version = "1.0.0+1" - -[[deps.Qhull_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "be2449911f4d6cfddacdf7efc895eceda3eee5c1" -uuid = "784f63db-0788-585a-bace-daefebcd302b" -version = "8.0.1003+0" - [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" +git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.2" +version = "2.9.1" [[deps.QuantileRegressions]] deps = ["DataFrames", "Distributions", "LinearAlgebra", "StatsBase", "StatsModels"] -git-tree-sha1 = "e8b39a9b3f94f88166b20e61d685ba44f5b73856" +git-tree-sha1 = "c1d8658d97c81e01c31d6659fb9f1e242b91d267" uuid = "c6596682-b856-542f-9fff-31404643e889" -version = "0.1.10" +version = "0.1.11" [[deps.QuasiMonteCarlo]] -deps = ["Distributions", "LatinHypercubeSampling", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Sobol", "StatsBase"] -git-tree-sha1 = "b10f1a5345f14f6431712661925ae2d8c02780ee" +deps = ["Distributions", "LatinHypercubeSampling", "LatticeRules", "Sobol"] +git-tree-sha1 = "3c4082632b3eddac3eaa7e1d476637101a5e76c5" uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.2.19" +version = "0.2.9" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -2383,9 +2726,9 @@ version = "1.6.1" [[deps.RandomExtensions]] deps = ["Random", "SparseArrays"] -git-tree-sha1 = "062986376ce6d394b23d5d90f01d81426113a3c9" +git-tree-sha1 = "b8a399e95663485820000f26b6a43c794e166a49" uuid = "fb686558-2515-59ef-acaa-46db3789a887" -version = "0.4.3" +version = "0.4.4" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -2400,19 +2743,19 @@ version = "0.3.2" [[deps.Ratios]] deps = ["Requires"] -git-tree-sha1 = "6d7bb727e76147ba18eed998700998e17b8e4911" +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.4" +version = "0.4.5" weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReadStatTables]] -deps = ["CEnum", "DataAPI", "Dates", "InlineStrings", "PooledArrays", "PrettyTables", "ReadStat_jll", "SentinelArrays", "StructArrays", "Tables"] -git-tree-sha1 = "479bd2e985e2bcd01a260e3949f79545bcfbbb5c" +deps = ["CEnum", "DataAPI", "Dates", "InlineStrings", "PooledArrays", "PrecompileTools", "PrettyTables", "ReadStat_jll", "SentinelArrays", "StructArrays", "Tables"] +git-tree-sha1 = "7a2c572e97f5588f5774d2b9024cad18401ec977" uuid = "52522f7a-9570-4e34-8ac6-c005c74d4b84" -version = "0.2.4" +version = "0.2.6" [[deps.ReadStat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -2434,25 +2777,27 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "02ef02926f30d53b94be443bfaea010c47f6b556" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.5" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "9088515ad915c99026beb5436d0a09cd8c18163e" +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.18" +version = "0.2.21" [[deps.RecursiveTupleMath]] deps = ["ForwardDiff", "StaticArrays"] @@ -2473,9 +2818,9 @@ version = "0.1.2" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -2491,9 +2836,15 @@ version = "1.1.1" [[deps.Revise]] deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "feafdc70b2e6684314e188d95fe66d116de834a7" +git-tree-sha1 = "6990168abf3fe9a6e34ebb0e05aaaddf6572189e" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.2" +version = "3.5.10" + +[[deps.RingLists]] +deps = ["Random"] +git-tree-sha1 = "f39da63aa6d2d88e0c1bd20ed6a3ff9ea7171ada" +uuid = "286e9d63-9694-5540-9e3c-4e6708fa07b2" +version = "0.2.8" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] @@ -2509,25 +2860,32 @@ version = "0.4.0+0" [[deps.Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "de432823e8aab4dd1a985be4be768f95acf152d4" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.17" +version = "2.0.22" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" RootsIntervalRootFindingExt = "IntervalRootFinding" RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" [deps.Roots.weakdeps] ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RoundingEmulator]] +git-tree-sha1 = 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"StatisticalTraits", "Tables"] @@ -2587,25 +2956,36 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.18" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +[[deps.SetRounding]] +git-tree-sha1 = "d7a25e439d07a17b7cdf97eecee504c50fedf5f6" +uuid = "3cc68bcd-71a2-5612-b932-767ffbe40ab0" +version = "0.2.1" + [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.1" +[[deps.ShaderAbstractions]] +deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] +git-tree-sha1 = "db0219befe4507878b1a90e07820fed3e62c289d" +uuid = "65257c39-d410-5151-9873-9b3e5be5013e" +version = "0.4.0" + [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -2632,21 +3012,50 @@ git-tree-sha1 = "d263a08ec505853a5ff1c1ebde2070419e3f28e9" uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96" version = "0.4.0" +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + [[deps.SimpleChains]] deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LoopVectorization", "ManualMemory", "Polyester", "Random", "SIMDTypes", "SLEEFPirates", "Static", 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"DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "69b1a53374dd14d7c165d98cb646aeb5f36f8d07" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.15" +version = "0.1.25" weakdeps = ["NNlib"] [deps.SimpleNonlinearSolve.extensions] - SimpleBatchedNonlinearSolveExt = "NNlib" + SimpleNonlinearSolveNNlibExt = "NNlib" + +[[deps.SimplePartitions]] +deps = ["AbstractLattices", "DataStructures", "Permutations"] +git-tree-sha1 = "e9330391d04241eafdc358713b48396619c83bcb" +uuid = "ec83eff0-a5b5-5643-ae32-5cbf6eedec9d" +version = "0.3.1" + +[[deps.SimplePolynomials]] +deps = ["Mods", "Multisets", "Polynomials", "Primes"] +git-tree-sha1 = "7063828369cafa93f3187b3d0159f05582011405" +uuid = "cc47b68c-3164-5771-a705-2bc0097375a0" +version = "0.2.17" + +[[deps.SimpleRandom]] +deps = ["Distributions", "LinearAlgebra", "Random"] +git-tree-sha1 = "3a6fb395e37afab81aeea85bae48a4db5cd7244a" +uuid = "a6525b86-64cd-54fa-8f65-62fc48bdc0e8" +version = "0.3.1" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2661,15 +3070,9 @@ version = "1.1.0" [[deps.Sixel]] deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] -git-tree-sha1 = "8fb59825be681d451c246a795117f317ecbcaa28" +git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" -version = "0.1.2" - -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" +version = "0.1.3" [[deps.Sobol]] deps = ["DelimitedFiles", "Random"] @@ -2682,24 +3085,37 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" 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+git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2730,16 +3146,16 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StableHashTraits]] -deps = ["CRC32c", "Compat", "Dates", "SHA", "Tables", "TupleTools", "UUIDs"] -git-tree-sha1 = "0b8b801b8f03a329a4e86b44c5e8a7d7f4fe10a3" +deps = ["Compat", "SHA", "Tables", "TupleTools"] +git-tree-sha1 = "5a26dfe46e2cb5f5eca78114c7d49548b9597e71" uuid = "c5dd0088-6c3f-4803-b00e-f31a60c170fa" -version = "0.3.1" +version = "1.1.3" [[deps.StableRNGs]] deps = ["Random", "Test"] -git-tree-sha1 = "3be7d49667040add7ee151fefaf1f8c04c8c8276" +git-tree-sha1 = "ddc1a7b85e760b5285b50b882fa91e40c603be47" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" -version = "1.0.0" +version = "1.0.1" [[deps.StackViews]] deps = ["OffsetArrays"] @@ -2749,21 +3165,25 @@ version = "0.1.1" 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"SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.0" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2771,15 +3191,40 @@ weakdeps = ["OffsetArrays", "StaticArrays"] StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "8982b3607a212b070a5e46eea83eb62b4744ae12" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "fba11dbe2562eecdfcac49a05246af09ee64d055" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.25" +version = "1.8.1" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.0" +version = "1.4.2" + +[[deps.StatisticalMeasures]] +deps = ["CategoricalArrays", "CategoricalDistributions", "Distributions", "LearnAPI", "LinearAlgebra", "MacroTools", "OrderedCollections", "PrecompileTools", "ScientificTypesBase", "StatisticalMeasuresBase", "Statistics", "StatsBase"] +git-tree-sha1 = "b58c7cc3d7de6c0d75d8437b81481af924970123" +uuid = "a19d573c-0a75-4610-95b3-7071388c7541" +version = "0.1.3" + + [deps.StatisticalMeasures.extensions] + LossFunctionsExt = "LossFunctions" + ScientificTypesExt = "ScientificTypes" + + [deps.StatisticalMeasures.weakdeps] + LossFunctions = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7" + ScientificTypes = "321657f4-b219-11e9-178b-2701a2544e81" + +[[deps.StatisticalMeasuresBase]] +deps = ["CategoricalArrays", "InteractiveUtils", "MLUtils", "MacroTools", "OrderedCollections", "PrecompileTools", "ScientificTypesBase", "Statistics"] +git-tree-sha1 = "17dfb22e2e4ccc9cd59b487dce52883e0151b4d3" +uuid = "c062fc1d-0d66-479b-b6ac-8b44719de4cc" +version = "0.1.1" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] @@ -2790,19 +3235,19 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7" +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.6.0" +version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -2816,34 +3261,34 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsInverseFunctionsExt = "InverseFunctions" [[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" +version = "0.7.3" [[deps.SteadyStateDiffEq]] deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "564451a262696334a3bab19108a99dd90d5a22c8" +git-tree-sha1 = "2ca69f4be3294e4cd987d83d6019037d420d9fc1" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "1.15.0" +version = "1.16.1" [[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "619c846726548b7b2e8728b72f288acf10390121" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "753219de57ac7aab0feb88871d3c51e0eb5e3b03" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.61.0" +version = "6.64.0" [[deps.StrideArrays]] deps = ["ArrayInterface", "LinearAlgebra", "LoopVectorization", "Octavian", "Random", "SLEEFPirates", "Static", "StaticArrayInterface", "StaticArraysCore", "Statistics", "StrideArraysCore", "VectorizationBase", "VectorizedRNG", "VectorizedStatistics"] -git-tree-sha1 = "b75a3364d6e6c1164121d623bf3636c98d6a2dc4" +git-tree-sha1 = "b244acb1d501e05048c1d05f67abbdfff45a0b42" uuid = "d1fa6d79-ef01-42a6-86c9-f7c551f8593b" -version = "0.1.25" +version = "0.1.28" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "5ffcee1813efc849f188dce82ca1553bd5f3a476" +git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.14" +version = "0.4.17" [[deps.StringDistances]] deps = ["Distances", "StatsAPI"] @@ -2852,15 +3297,16 @@ uuid = "88034a9c-02f8-509d-84a9-84ec65e18404" version = "0.11.2" [[deps.StringManipulation]] -git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.0" +version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" +deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] +git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.15" +version = "0.6.16" [[deps.StructTypes]] deps = ["Dates", "UUIDs"] @@ -2873,39 +3319,40 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SummationByPartsOperators]] deps = ["ArgCheck", "AutoHashEquals", "FFTW", "InteractiveUtils", "LinearAlgebra", "LoopVectorization", "MuladdMacro", "PolynomialBases", "PrecompileTools", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SimpleUnPack", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Unrolled"] -git-tree-sha1 = "5f4b02bae69ae3b182de426eaac7563acdac7e6d" +git-tree-sha1 = "1b176d69efc152f75341349bd3694e4e67484ec9" uuid = "9f78cca6-572e-554e-b819-917d2f1cf240" -version = "0.5.35" -weakdeps = ["BandedMatrices", "DiffEqCallbacks", "StructArrays"] +version = "0.5.51" +weakdeps = ["BandedMatrices", "DiffEqCallbacks", "ForwardDiff", "StructArrays"] [deps.SummationByPartsOperators.extensions] - BandedMatricesExt = "BandedMatrices" - DiffEqCallbacksExt = "DiffEqCallbacks" - StructArraysExt = "StructArrays" + SummationByPartsOperatorsBandedMatricesExt = "BandedMatrices" + SummationByPartsOperatorsDiffEqCallbacksExt = "DiffEqCallbacks" + SummationByPartsOperatorsForwardDiffExt = "ForwardDiff" + SummationByPartsOperatorsStructArraysExt = "StructArrays" [[deps.Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "a982ee85e1908d39f58d7fff670e60f991ca2ddb" +git-tree-sha1 = "f8992f3fe2388e0de5f67376ce6aaf4c90b4ee4c" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.19.0" +version = "4.22.1" [[deps.Sundials_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] -git-tree-sha1 = "04777432d74ec5bc91ca047c9e0e0fd7f81acdb6" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] +git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" -version = "5.2.1+0" +version = "5.2.2+0" [[deps.Survival]] -deps = ["Distributions", "LinearAlgebra", "PositiveFactorizations", "StatsBase", "StatsModels"] -git-tree-sha1 = "377fec69af6515121fe4fba766a2cf4ca1d87fce" +deps = ["Compat", "Distributions", "LinearAlgebra", "Optim", "StatsAPI", "StatsBase", "StatsModels", "Tables"] +git-tree-sha1 = "e7de0ec84d50248560eb3fb03bb6fead1ef55d6d" uuid = "8a913413-2070-5976-9d4c-2b364fdc2f7f" -version = "0.2.2" +version = "0.3.0" [[deps.SymbolicIndexingInterface]] deps = ["DocStringExtensions"] @@ -2915,15 +3362,27 @@ version = "0.2.2" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs", "Unityper"] -git-tree-sha1 = "5cb1f963f82e7b81305102dd69472fcd3e0e1483" +git-tree-sha1 = "2f3fa844bcd33e40d8c29de5ee8dded7a0a70422" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "1.0.5" +version = "1.4.0" [[deps.Symbolics]] -deps = ["ArrayInterface", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "Markdown", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TreeViews"] -git-tree-sha1 = "e23ec62c083ca8f15a4b7174331b3b8d1c511e47" +deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils"] +git-tree-sha1 = "28f55dcd865e4a97f262fc476306cee14e8d4651" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.3.1" +version = "5.11.0" + + [deps.Symbolics.extensions] + SymbolicsSymPyExt = "SymPy" + + [deps.Symbolics.weakdeps] + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + +[[deps.T8code]] +deps = ["CEnum", "Libdl", "MPI", "MPIPreferences", "Preferences", "Reexport", "TOML", "UUIDs", "t8code_jll"] +git-tree-sha1 = "af9c4cf3b60602e37a6d31e273e77457e95db907" +uuid = "d0cc0030-9a40-4274-8435-baadcfd54fa1" +version = "0.4.3" [[deps.TOML]] deps = ["Dates"] @@ -2937,16 +3396,26 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.1" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" +[[deps.TaylorSeries]] +deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] +git-tree-sha1 = "9138fdc8ee4e3b8839eca696a76d15e16c9c7af0" +uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" +version = "0.15.4" +weakdeps = ["IntervalArithmetic"] + + [deps.TaylorSeries.extensions] + TaylorSeriesIAExt = "IntervalArithmetic" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -2965,9 +3434,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "c97f60dd4f2331e1a495527f80d242501d2f9865" +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.1" +version = "0.5.2" [[deps.ThreadsX]] deps = ["ArgCheck", "BangBang", "ConstructionBase", "InitialValues", "MicroCollections", "Referenceables", "Setfield", "SplittablesBase", "Transducers"] @@ -2977,9 +3446,9 @@ version = "0.1.11" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] -git-tree-sha1 = "8621f5c499a8aa4aa970b1ae381aae0ef1576966" +git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.6.4" +version = "0.6.8" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2988,9 +3457,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.Tokenize]] -git-tree-sha1 = "90538bf898832b6ebd900fa40f223e695970e3a5" +git-tree-sha1 = "0454d9a9bad2400c7ccad19ca832a2ef5a8bc3a1" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" -version = "0.5.25" +version = "0.5.26" [[deps.TranscodingStreams]] deps = ["Random", "Test"] @@ -2999,16 +3468,30 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.9.13" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "e579d3c991938fecbb225699e8f611fa3fbf2141" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.79" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" [[deps.TransformVariables]] -deps = ["ArgCheck", "ChangesOfVariables", "DocStringExtensions", "ForwardDiff", "InverseFunctions", "LinearAlgebra", "LogExpFunctions", "Pkg", "Random", "SimpleUnPack", "StaticArrays"] -git-tree-sha1 = "f8a2c29e3ddcaedec620ff8210b7d6dde66b14c7" +deps = ["ArgCheck", "ChangesOfVariables", "DocStringExtensions", "ForwardDiff", "InverseFunctions", "LinearAlgebra", "LogExpFunctions", "Random", "SimpleUnPack", "StaticArrays"] +git-tree-sha1 = "70f415ef6733b57aeff76981c7acb0b769af24d9" uuid = "84d833dd-6860-57f9-a1a7-6da5db126cff" -version = "0.8.7" +version = "0.8.10" [[deps.Trapz]] git-tree-sha1 = "79eb0ed763084a3e7de81fe1838379ac6a23b6a0" @@ -3029,20 +3512,25 @@ version = "1.6.2+0" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Triangulate]] -deps = ["DocStringExtensions", "Libdl", "Printf", "Test", "Triangle_jll"] -git-tree-sha1 = "bbca6ec35426334d615f58859ad40c96d3a4a1f9" +deps = ["DocStringExtensions", "Printf", "Triangle_jll"] +git-tree-sha1 = "864f14dd4733ad8b3bf53b7373291b344a6d87a0" uuid = "f7e6ffb2-c36d-4f8f-a77e-16e897189344" -version = "2.2.0" +version = "2.3.2" + + [deps.Triangulate.weakdeps] + CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" + GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" + PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee" [[deps.Tricks]] -git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.7" +version = "0.1.8" [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" @@ -3056,32 +3544,48 @@ uuid = "808ab39a-a642-4abf-81ff-4cb34ebbffa3" version = "0.1.2" [[deps.Trixi]] -deps = ["CodeTracking", "ConstructionBase", "DiffEqCallbacks", "EllipsisNotation", "FillArrays", "ForwardDiff", "HDF5", "IfElse", "LinearAlgebra", "LinearMaps", "LoopVectorization", "MPI", "MuladdMacro", "Octavian", "OffsetArrays", "P4est", "Polyester", "PrecompileTools", "Printf", "RecipesBase", "Reexport", "Requires", "SciMLBase", "Setfield", "SimpleUnPack", "SparseArrays", "StartUpDG", "Static", "StaticArrayInterface", "StaticArrays", "StrideArrays", "StructArrays", "SummationByPartsOperators", "TimerOutputs", "Triangulate", "TriplotBase", "TriplotRecipes"] -git-tree-sha1 = "37296dd98de0e9171299149ac2e82b7e1b58b68b" +deps = ["CodeTracking", "ConstructionBase", "DiffEqCallbacks", "EllipsisNotation", "FillArrays", "ForwardDiff", "HDF5", "IfElse", "LinearAlgebra", "LinearMaps", "LoopVectorization", "MPI", "MuladdMacro", "Octavian", "OffsetArrays", "P4est", "Polyester", "PrecompileTools", "Printf", "RecipesBase", "Reexport", "Requires", "SciMLBase", "Setfield", "SimpleUnPack", "SparseArrays", "StartUpDG", "Static", "StaticArrayInterface", "StaticArrays", "StrideArrays", "StructArrays", "SummationByPartsOperators", "T8code", "TimerOutputs", "Triangulate", "TriplotBase", "TriplotRecipes"] +git-tree-sha1 = "db314e38a1ec3be1fd446c553ceb7ab1f89f7330" uuid = "a7f1ee26-1774-49b1-8366-f1abc58fbfcb" -version = "0.5.25" +version = "0.6.4" +weakdeps = ["Makie"] + + [deps.Trixi.extensions] + TrixiMakieExt = "Makie" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.3.0" +version = "1.4.0" [[deps.Tullio]] -deps = ["ChainRulesCore", "DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "7871a39eac745697ee512a87eeff06a048a7905b" +deps = ["DiffRules", "LinearAlgebra", "Requires"] +git-tree-sha1 = "6d476962ba4e435d7f4101a403b1d3d72afe72f3" uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.5" +version = "0.3.7" + + [deps.Tullio.extensions] + TullioCUDAExt = "CUDA" + TullioChainRulesCoreExt = "ChainRulesCore" + TullioFillArraysExt = "FillArrays" + TullioTrackerExt = "Tracker" + + [deps.Tullio.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.TupleTools]] -git-tree-sha1 = "3c712976c47707ff893cf6ba4354aa14db1d8938" +git-tree-sha1 = "155515ed4c4236db30049ac1495e2969cc06be9d" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.3.0" +version = "1.4.3" [[deps.URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" +version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -3103,14 +3607,15 @@ version = "0.4.1" [[deps.UnicodePlots]] deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "LinearAlgebra", "MarchingCubes", "NaNMath", "PrecompileTools", "Printf", "Requires", "SparseArrays", "StaticArrays", "StatsBase"] -git-tree-sha1 = "5e3a9796dfae26edbe5a2cc436b230c86a8ab0c4" +git-tree-sha1 = "b96de03092fe4b18ac7e4786bee55578d4b75ae8" uuid = "b8865327-cd53-5732-bb35-84acbb429228" -version = "3.5.3" +version = "3.6.0" [deps.UnicodePlots.extensions] FreeTypeExt = ["FileIO", "FreeType"] ImageInTerminalExt = "ImageInTerminal" IntervalSetsExt = "IntervalSets" + TermExt = "Term" UnitfulExt = "Unitful" [deps.UnicodePlots.weakdeps] @@ -3118,23 +3623,25 @@ version = "3.5.3" FreeType = "b38be410-82b0-50bf-ab77-7b57e271db43" ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Term = "22787eb5-b846-44ae-b979-8e399b8463ab" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "ba4aa36b2d5c98d6ed1f149da916b3ba46527b2b" +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.14.0" -weakdeps = ["InverseFunctions"] +version = "1.19.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" [[deps.Unityper]] deps = ["ConstructionBase"] -git-tree-sha1 = "d5f4ec8c22db63bd3ccb239f640e895cfde145aa" +git-tree-sha1 = "21c8fc7cd598ef49f11bc9e94871f5d7740e34b9" uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" -version = "0.1.2" +version = "0.1.5" [[deps.Unrolled]] deps = ["MacroTools"] @@ -3149,9 +3656,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[deps.VTKBase]] git-tree-sha1 = "c2d0db3ef09f1942d08ea455a9e252594be5f3b6" @@ -3160,21 +3667,25 @@ version = "1.0.1" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "b182207d4af54ac64cbc71797765068fdeff475d" +git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.64" +version = "0.21.65" [[deps.VectorizedRNG]] -deps = ["Distributed", "Random", "SLEEFPirates", "StaticArraysCore", "StrideArraysCore", "UnPack", "VectorizationBase"] -git-tree-sha1 = "1f42b49f2b6ec5245a399e48951a72cdb40bd5cb" +deps = ["Distributed", "Random", "SLEEFPirates", "UnPack", "VectorizationBase"] +git-tree-sha1 = "5ca83562ba95272d8709c6c91e31e23c3c4c9825" uuid = "33b4df10-0173-11e9-2a0c-851a7edac40e" -version = "0.2.24" +version = "0.2.25" +weakdeps = ["Requires", "StaticArraysCore"] + + [deps.VectorizedRNG.extensions] + VectorizedRNGStaticArraysExt = ["StaticArraysCore"] [[deps.VectorizedStatistics]] deps = ["LoopVectorization", "PrecompileTools", "Static"] -git-tree-sha1 = "4b15274d6aab317efb7e0d06efac453cbd80fb84" +git-tree-sha1 = "774e4224fb1784862b7617ca4db71b44af0e8761" uuid = "3b853605-1c98-4422-8364-4bd93ee0529e" -version = "0.5.5" +version = "0.5.7" [[deps.VertexSafeGraphs]] deps = ["Graphs"] @@ -3188,11 +3699,21 @@ git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" +[[deps.WeightInitializers]] +deps = ["PackageExtensionCompat", "PartialFunctions", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "f5c5118f3cd9a2ee5992d43d0a296caa671edea9" +uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" +version = "0.1.3" +weakdeps = ["CUDA"] + + [deps.WeightInitializers.extensions] + WeightInitializersCUDAExt = "CUDA" + [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "0.5.6" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -3201,15 +3722,15 @@ version = "1.6.1" [[deps.WriteVTK]] deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "TranscodingStreams", "VTKBase"] -git-tree-sha1 = "7b46936613e41cfe1c6a5897d243ddcab8feabec" +git-tree-sha1 = "41f0dc2a8f6fd860c266b91fd5cdf4fead65ae69" uuid = "64499a7a-5c06-52f2-abe2-ccb03c286192" -version = "1.18.0" +version = "1.18.1" [[deps.XGBoost]] deps = ["AbstractTrees", "CEnum", "JSON3", "LinearAlgebra", "OrderedCollections", "SparseArrays", "SparseMatricesCSR", "Statistics", "Tables", "XGBoost_jll"] -git-tree-sha1 = "d3374bbb77326d7f79ab1cff91b31b1978b871b0" +git-tree-sha1 = "bacb62e07d104630094c8dac2fd070f5d4b9b305" uuid = "009559a3-9522-5dbb-924b-0b6ed2b22bb9" -version = "2.3.0" +version = "2.5.1" [deps.XGBoost.extensions] XGBoostCUDAExt = "CUDA" @@ -3221,15 +3742,15 @@ version = "2.3.0" [[deps.XGBoost_jll]] deps = ["Artifacts", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "6d4d6823b7b121c221d263a386d2039bbd3478e8" +git-tree-sha1 = "1c0aa2390a7ebb28a3d6c214f64e57a24091fbd7" uuid = "a5c6f535-4255-5ca2-a466-0e519f119c46" -version = "1.7.4+0" +version = "2.0.1+0" [[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.3+0" +version = "2.12.2+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -3238,22 +3759,22 @@ uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.34+0" [[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.6.9+4" +version = "1.8.6+0" [[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -3268,33 +3789,33 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "ebac1ae9f048c669317ad48c9bed815790a468d8" +git-tree-sha1 = "5ded212acd815612df112bb895ef3910c5a03f57" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.61" +version = "0.6.67" [deps.Zygote.extensions] ZygoteColorsExt = "Colors" @@ -3308,15 +3829,9 @@ version = "0.6.61" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.cuDNN]] -deps = ["CEnum", "CUDA", "CUDNN_jll"] -git-tree-sha1 = "f65490d187861d6222cb38bcbbff3fd949a7ec3e" -uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -version = "1.0.4" +version = "0.2.4" [[deps.isoband_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -3324,6 +3839,12 @@ git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" version = "0.2.3+0" +[[deps.libaec_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "eddd19a8dea6b139ea97bdc8a0e2667d4b661720" +uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" +version = "1.0.6+1" + [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" @@ -3339,7 +3860,13 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" + +[[deps.libevent_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll"] +git-tree-sha1 = "f04ec6d9a186115fb38f858f05c0c4e1b7fc9dcb" +uuid = "1080aeaf-3a6a-583e-a51c-c537b09f60ec" +version = "2.1.13+1" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -3348,10 +3875,10 @@ uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" version = "2.0.2+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.40+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] @@ -3368,12 +3895,24 @@ version = "1.3.7+1" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" + +[[deps.prrte_jll]] +deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "PMIx_jll", "libevent_jll"] +git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0" +uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9" +version = "3.0.2+0" + +[[deps.t8code_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "Zlib_jll"] +git-tree-sha1 = "7e0eb2fd3c551e70388de30d04b29667bd61f9b2" +uuid = "4ee9bed8-4011-53f7-90c2-22363c2f500d" +version = "1.6.1+1" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/Project.toml b/Project.toml index 38afa1f..7df3353 100644 --- a/Project.toml +++ b/Project.toml @@ -108,7 +108,6 @@ Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" VectorizedRNG = "33b4df10-0173-11e9-2a0c-851a7edac40e" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - [extras] Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"