Sparse matrix loading error: "SparseArrays.SparseMatrixCSC{Core.Int8,Core.Int64} does not match currently loaded type" #282
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emsal0
changed the title
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Can you show the output of I'm going to guess you're using JLD with HDF5 v0.13.6 and HDF5_jll v1.12.0. I may have debugged a way to fix the problem, though I still don't understand why it shows up with HDF5_jll v1.12 and not v1.10. In the mean time, try forcing HDF5 to v0.13.7 which should downgrade HDF5_jll back to v1.10.5+7, and see if that helps. |
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Please retry with the newly tagged JLD v0.11. I expect that will have fixed your problem. |
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I am seeing the same issue. Whenever JLD loads a file, the type that it loads is not the same type that it's saved with. |
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Can you give a minimal test case to demonstrate the error? In particular, have you loaded the package which defines the type prior to loading the file? For instance, I can get a warning and a unique type by not loading the Generate data file $ julia1.6 --quiet
julia> using JLD
julia> using SparseArrays
julia> JLD.save("/tmp/sparse.jld", "A", sprand(500, 500, 0.001))
julia> exit()Load file with $ julia1.6 --quiet
julia> using JLD
julia> using SparseArrays
julia> JLD.load("/tmp/sparse.jld", "A")
500×500 SparseMatrixCSC{Float64, Int64} with 238 stored entries:
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠌⠀⠀⠀⠐⠀⠀⠈⠀⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠂⠀⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⡀⠀⠐⠀
⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⡀⠀⠀⠀⠀⠀⠀⠀⠀⠒⠀⠀⠀⠀⠀⠀⠐⡀⠐⠀⠀⠀⡀⠁⠀⠀⠀⠂⠀⠈⠂
⢀⠀⠈⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠀⠀⠁⠀⠀⠠⠀⠀⠄⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠀⠀⡃⡀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠂⠁⠀⠀⠀
⠂⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠂⠈⠀⠀⠀⠀⠂⠠⠀⠀⠀⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠁⠀⠀⠀⠀⠠⠀⠐
⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠄⠀⢀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠈⡀
⠀⢈⠄⠐⠀⠀⠀⠀⠀⠀⠠⠀⠀⡈⠀⠀⠀⠀⠀⠀⠢⠀⠀⠂⡀⠂⠀⠀⠀⠂⢀⠀⠀⠀⠀⠀⠀⠀⠄⠀⡀⠀⠀⠀⠀⠀⠀⠀⠈
⠀⠀⠄⠀⠀⠀⠊⠀⠀⠀⠀⠈⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠄⠄⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀
⠐⠀⠀⠀⠀⠈⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⢁⠀⠀⠀⠀⠀⠀⢤⠂⠀⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠈⠂⠈⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠠⠀⠀⠀⠀⠐⠀⠠
⠀⠀⠈⠀⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠐⠀⠀⠀⠀⠀⠀⠁⠂⠀⠀⠁⠀⠀⠀⠈⠀⠄⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠨⠀⢀⠀⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⠀⠀⢀⠠⠀⠀⠈⠀⠂⠀⠀
⠀⠀⠈⠀⠐⠀⠀⠀⠀⠀⠂⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠀⠀⠀⠃⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⠈⢀⠀⠀⡀⠀⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠐⠀⠉⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⡀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⣀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⡀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠄⡀⡀⠀⠀⠀⠀⠄⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⡂⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠂⠀⠄⠈⠐⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠀⠀⠀⠀⠄⡀⠁
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠠⠀⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠂⠀⠀⠂
⠀⠀⠀⠀⠀⠀⠐⠀⠢⠀⠀⠀⠀⠀⠀⠀⠀⢐⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⢠⠀⠀⠁⠀⠀⠀⠁⠀⠀⠀
⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠐⠀⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⢠⠀⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⢀⠀⠀⠀⠀⠀
⡀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⡈⠀⠠⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠀⠀⠠⠀⠀⠐⠀⠀⠀⡀⠀⠁⠀⠠⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠠⢀⠀⠠⠀⠀⠀⠀⠀⠈⠀⠀⠄⠀⠐⠀⠁⠀⠐⠀⠀⠀⠀
⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠠⠀⠀⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀
⠀⠀⠀⡀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠊⠀⠀⠀⠀⠐⠀⠄⠀⠀⠀⠀⠀⠀⠁⠀⠠⠀⠀⠀⠂⠀⠀⠀⢀⠀⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
julia> exit()Load without first loading |
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I had this issue as well -- appeared to happen whenever I mixed Core.Tuple and Core.Array in the type, e.g. |
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We (me + @grig-guz) are trying to store a (large) CSV dataset into a sparse matrix and subsequently put that in a JLD blob. However we are getting some weird type error when trying to load it again: ERROR: stored type SparseArrays.SparseMatrixCSC{Core.Int8,Core.Int64} does not match currently loaded type
The following script is how we package it up
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