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more generally, make it a default to ignore the cell dimension in the non-PBC direction and always project to the cell in the PBC directions. + document this clearly. That way there is no more ambiguity how the positions are treated. See also #6
While I am revisiting the meaning of the cell variable, should also double-check and test what happens when the determinant is negative. Probably it makes no difference, but who knows?
consider redefining the cell in terms of the extent of X when NOT PBC
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