diff --git a/README.md b/README.md new file mode 100644 index 0000000..fc93640 --- /dev/null +++ b/README.md @@ -0,0 +1,42 @@ +# GHS-DPP paper repository + +This repository contains software and data used +in the paper titled + +``` +High-speed imaging of light-induced photoreceptor microsaccades in compound eyes +``` + +[Preprint (bioRxiv)](https://www.biorxiv.org/content/10.1101/2021.07.22.453335v2) + + +## Contents + +- Gonio Imsoft (v0.6.0) - Fast goniometric imaging software +- Gonio Analysis (v0.0.2) - Goniometric (motion) analysis software +- GHS-DPP dataset (v1.0.0) (av1 compressed) + * wild-type + * *spam* + * honeybee + +For further details, please see the respective folders. + + +## External material + +The supplementary videos (hosted in bioRxiv) show how + +- [V1 (illustration)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC1/embed/media-1.mp4?download=true): the GHS-DPP microscopy was put together +- [V2 (illustration)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC2/embed/media-2.mp4?download=true): the GHS-DPP microscopy works +- [V3 (results)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC3/embed/media-3.mp4?download=true): Drosophila's ommatidial rhabdomere orientation matches the optic flow during forward translation +- [V4 (illustration/simulation)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC4/embed/media-4.mp4?download=true): + a) the number of locally activated photoreceptor microsaccades depends on the angular size of the light stimulus + b) the number of ommatidial photoreceptors pooled in the DPP imaging depends on the microscope system's numerical aperture (NA) +- [V5: (results)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC5/embed/media-5.mp4?download=true) wild-type and spam microsaccades are +- [V6: (results)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC6/embed/media-6.mp4?download=true) photoreceptor microsaccade movement directions match the ommatidial rhabdomere orientation happen across the Drosophila eyes + + +The contents of this repository are also available as Zenodo uploads + +- Imaging and analysis software: [10.5281/zenodo.5824758](https://www.doi.org/10.5281/zenodo.5824758) +- GHS-DPP dataset (av1 compressed): [10.5281/zenodo.5824671](https://www.doi.org/10.5281/zenodo.5824671)