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@@ -4,140 +4,206 @@ along with calculations of electric and magnetic fields. | |
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| Find a full user guide under http://katrin-experiment.github.io/Kassiopeia/index.html | ||
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| Kassiopeia: Simulation of electric and magnetic fields and particle tracking | ||
| ============================================================================ | ||
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| -------------------------------------------------- | ||
| Kassiopeia: Simulation of electric and magnetic fields and particle tracking | ||
| ============================================================================== | ||
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| System requirements: | ||
| -------------------------------------------------- | ||
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| Linux/MacOS (Windows+cygwin should work too, but has not been tested) | ||
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| Some dependencies are only required if certain module are compiled in. | ||
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| Dependencies: | ||
| CMake (www.cmake.org) version 2.8 or higher | ||
| G++ version 4.5 or higher (if compiling with GCC) | ||
| GSL (www.gnu.org/software/gsl) | ||
| ROOT (www.cern.ch/root) version 5.24 or higher (6.x should work too) | ||
| --enable-minuit2 (if you want to use KaFit) | ||
| --enable-fftw3 (if you want to use KEMField) | ||
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| Optional Dependencies: | ||
| Boost (www.boost.org) version 1.46 or higher | ||
| LibXml2 (xmlsoft.org) | ||
| Log4CXX (logging.apache.org/log4cxx) | ||
| MPI (www.open-mpi.org or mpich.org) | ||
| OpenCL (www.khronos.org/opencl), installation details depend on your system | ||
| OpenSSL (openssl.org) version 0.9.6 or higher | ||
| PETSc (mcs.anl.gov/petsc) | ||
| VTK (www.vtk.org) version 5.0 or higher | ||
| zlib (www.zlib.net) | ||
| pdflatex (for making the documentation; minimum version not known) | ||
| doxygen (for making the documentation; minimum version not known) | ||
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| -------------------------------------------------- | ||
| ---------------------- | ||
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| NOTE: Kasper requires Linux/MacOS. Windows+cygwin should work too, but has not been tested. | ||
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| Some dependencies are only required if certain module are compiled in. | ||
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| Dependencies: | ||
| * CMake (https://www.cmake.org) version 3.13 or higher | ||
| * G++ (https://gcc.gnu.org) version 6.1 or higher (if compiling with GCC) | ||
| * Clang++ (https://clang.llvm.org) version 3.4 or higher (if compiling with clang) | ||
| * GSL (https://www.gnu.org/software/gsl) | ||
| * ROOT (https://www.cern.ch/root) version 6.0 or higher | ||
| + --enable-minuit2 (if you want to use KaFit) | ||
| + --enable-fftw3 (if you want to use KEMField) | ||
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| Optional Dependencies: | ||
| * Boost (https://www.boost.org) version 1.61 or higher | ||
| * FFTW (https://fftw.org) version 3.3.4 or higher | ||
| * HDF5 (https://support.hdfgroup.org/HDF5/) | ||
| * LibXml2 (https://www.xmlsoft.org) | ||
| * Log4CXX (https://logging.apache.org/log4cxx) | ||
| * MPI (https://www.open-mpi.org or mpich.org) | ||
| * OpenCL (https://www.khronos.org/opencl), installation details depend on your system | ||
| * OpenMP (https://www.openmp.org) | ||
| * OpenSSL (https://openssl.org) version 1.0.0 or higher | ||
| * PCL (https://www.pointclouds.org) version 1.2 or higher | ||
| * PETSc (https://mcs.anl.gov/petsc) | ||
| * SQLite3 (https://sqlite.org), for IDLE local storage | ||
| * TBB (https://software.intel.com/en-us/tbb) | ||
| * VTK (https://www.vtk.org) version 6.1 or higher | ||
| * zlib (https://www.zlib.net) | ||
| * pdflatex (for making the documentation; minimum version not known) | ||
| * doxygen (for making the documentation; minimum version not known) | ||
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| ### Ubuntu Linux 18.04 LTS (bionic) | ||
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| * Make sure to update CMake to version 3.13 or newer. See www.cmake.org or use this | ||
| [direct link](https://github.com/Kitware/CMake/releases/download/v3.13.4/cmake-3.13.4-Linux-x86_64.tar.gz). | ||
| * Download ROOT libraries from cern.root.ch or use this | ||
| [direct link](https://root.cern/download/root_v6.18.04.Linux-ubuntu18-x86_64-gcc7.4.tar.gz). | ||
| Another option is to build your own version from the source files. | ||
| * To install all build dependencies: | ||
| ``` | ||
| > apt-get update -y && apt-get install -y \ | ||
| build-essential cmake cmake-curses-gui \ | ||
| libqt4-dev libx11-dev libxext-dev libxft-dev libxpm-dev \ | ||
| libboost-all-dev libfftw3-dev libgsl0-dev libhdf5-dev liblog4cxx-dev libomp-dev libopenmpi-dev \ | ||
| libpcl-dev libsqlite3-dev libssl-dev libtbb-dev libvtk6-dev libxml2-dev ocl-icd-opencl-dev zlib1g-dev | ||
| ``` | ||
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| ### Fedora Linux 31 | ||
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| * The ROOT libraries can be installed easily with the package manager. | ||
| * To install all build dependencies: | ||
| ``` | ||
| > dnf install -y \ | ||
| @development-tools cmake cmake-gui \ | ||
| root-core root-io-xmlparser root-minuit2 root-spectrum \ | ||
| vtk vtk-qt vtk-java \ | ||
| boost-devel fftw-devel gsl-devel hdf5-devel libomp-devel libxml2-devel log4cxx-devel \ | ||
| ocl-icd-devel openmpi-devel openssl-devel pcl-devel sqlite-devel tbb-devel vtk-devel zlib-devel | ||
| ``` | ||
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| Installation | ||
| -------------------------------------------------- | ||
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| 1. Make a separate directory for the build tree, and enter that directory: | ||
| > mkdir build | ||
| > cd build | ||
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| 1.5. Consider setting important environmental variables now. | ||
| Selecting a specific compiler to be configured | ||
| by CMake is done for example by | ||
| > export CXX=clang++ | ||
| > export CC=clang | ||
| to use the Clang/LLVM compiler, or | ||
| > export CXX=g++ | ||
| > export CC=gcc | ||
| to use the GNU compiler (GCC). | ||
|
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| 2. Run cmake (or ccmake, or cmake-gui, if you prefer): | ||
| > cmake .. | ||
|
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| 2.5. If applicable, make any changes you need to the configuration, | ||
| and (re)generate the makefiles. e.g. You may want to change the | ||
| install prefix (NOTE: most users will probably want to do this). | ||
| The default is <Source-Directory>/install. If you're not doing | ||
| a general install for your system, or if you just want to use | ||
| a different location, you should change CMAKE_INSTALL_PREFIX | ||
| to your desired location. Note the CMAKE_BUILD_TYPE. | ||
| If you do not plan to debug kasper applications, | ||
| 'Release' will give you the best execution performance. | ||
| If you use one of the GUI variants (ccmake or cmake-gui), | ||
| you can just go through a list of all the available build options. | ||
| Most options also have a short description. Note that some variables | ||
| have dependencies (e.g. BUILD_KASSIOPEIA will also enable BUILD_KEMFIELD). | ||
|
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| 3. Then type | ||
| > make | ||
| to start the build process. This can take some time, | ||
| depending on the modules you activated in CMake. | ||
| If you have more than one CPU core on your system, | ||
| you can build several files in parallel: | ||
| > make -j2 | ||
| Make sure to keep the number passed to 'make' smaller | ||
| than the number of actual CPU cores. | ||
|
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| 4. Install the executables and libraries with | ||
| > make install | ||
| Executables are installed in the bin/ directory, | ||
| and libraries are installed in the lib/ directory. | ||
|
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| 5. Include kasperenv.sh in your .bashrc with | ||
| > source /path/to/Kasper/install/bin/kasperenv.sh | ||
| This script adds the bin/ directory to your $PATH so you | ||
| can call executables directly from the commandline. | ||
| Furthermore this sets the $KASPERSYS environment variable. | ||
|
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||
|
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||
| -------------------------------------------------- | ||
| -------------- | ||
|
|
||
| 1. Make a separate directory for the build tree, and enter that directory: | ||
| ``` | ||
| > mkdir build | ||
| > cd build | ||
| ``` | ||
|
|
||
| * Consider setting important environmental variables now. | ||
| Selecting a specific compiler to be configured by CMake is done for example by | ||
| ``` | ||
| > export CXX=clang++ | ||
| > export CC=clang | ||
| ``` | ||
| to use the Clang/LLVM compiler, or | ||
| ``` | ||
| > export CXX=g++ | ||
| > export CC=gcc | ||
| ``` | ||
| to use the GNU compiler (GCC). | ||
|
|
||
| 2. Run cmake (or ccmake, or cmake-gui, if you prefer): | ||
| ``` | ||
| > cmake .. | ||
| > ccmake .. | ||
| ``` | ||
|
|
||
| * If applicable, make any changes you need to the configuration, and | ||
| (re)generate the makefiles. e.g. You may want to change the install | ||
| prefix. (NOTE: Most users will probably want to do this.) | ||
|
|
||
| The default is `<Source-Directory>/install`. If you're not doing | ||
| a general install for your system, or if you just want to use a | ||
| different location, you should change `CMAKE_INSTALL_PREFIX` to | ||
| your desired location. Also note the `CMAKE_BUILD_TYPE`. If you | ||
| do not plan to debug Kasper applications, 'Release' will give you | ||
| the best execution performance. | ||
|
|
||
| If you use one of the GUI variants (ccmake or cmake-gui), you can | ||
| just go through a list of all the available build options. Most | ||
| options also have a short description. Note that some variables | ||
| have dependencies (e.g. `BUILD_KASSIOPEIA` will also enable | ||
| `BUILD_KEMFIELD`). | ||
|
|
||
| 3. Then type | ||
| ``` | ||
| > make | ||
| ``` | ||
| to start the build process. This can take some time, depending on the | ||
| modules you activated in CMake. If you have more than one CPU core on | ||
| your system, you can build several files in parallel: | ||
| ``` | ||
| > make -j2 | ||
| ``` | ||
| Make sure to keep the number passed to 'make' smaller than the number | ||
| of actual CPU cores. Instead of 'make' you could also use 'ninja' | ||
| or any other build tool that works with CMake. | ||
|
|
||
| 4. Install the executables and libraries with | ||
| ``` | ||
| > make install | ||
| ``` | ||
| Executables are installed in the `bin/` directory, and libraries are | ||
| installed in the `lib/` directory (or `lib64/` on some systems.) | ||
|
|
||
| 5. Include `kasperenv.sh` in your `~/.bashrc` (or similar, depending on | ||
| your shell) with | ||
| ``` | ||
| > source /path/to/Kasper/install/bin/kasperenv.sh | ||
| ``` | ||
| This script adds the `bin/` directory to your `$PATH` so you can call | ||
| any Kasper executables directly from the commandline. Furthermore this | ||
| sets the `$KASPERSYS` environment variable to the install directory. | ||
|
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| Docker container | ||
| -------------------------------------------------- | ||
|
|
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| 1. A Docker container with Kasper is available at | ||
| https://hub.docker.com/r/katrinexperiment/kassiopeia | ||
| 2. This Docker container can be used with Docker | ||
| (with superuser privileges). | ||
| A. Pull the container to your system with | ||
| > sudo docker pull katrinexperiment/kassiopeia | ||
| B. Open a shell inside the container with | ||
| > sudo docker run --rm -it katrinexperiment/kassiopeia /bin/bash | ||
| 3. The Docker container can also be used with Singularity | ||
| (as a regular user). | ||
| A. Pull the container to your system with | ||
| > singularity pull docker://katrinexperiment/kassiopeia | ||
| B. Open a shell inside the container with | ||
| > singularity shell docker://katrinexperiment/kassiopeia | ||
| or (if a local copy is available already) | ||
| > singularity shell kassiopeia-latest.sif | ||
| 4. Build the container locally with | ||
| > sudo docker build -t katrinexperiment/kassiopeia . | ||
| and upload the local container to Docker Hub with | ||
| > sudo docker push katrinexperiment/kassiopeia | ||
|
|
||
|
|
||
| -------------------------------------------------- | ||
| ------------------ | ||
|
|
||
| 1. A Docker container with Kasper is available at | ||
| https://hub.docker.com/r/katrinexperiment/kassiopeia | ||
|
|
||
| 2. This Docker container can be used with Docker (with superuser privileges). | ||
| 1. Pull the container to your system with | ||
| ``` | ||
| > sudo docker pull katrinexperiment/kassiopeia | ||
| ``` | ||
| 2. Open a shell inside the container with | ||
| ``` | ||
| > sudo docker run --rm -it katrinexperiment/kassiopeia /bin/bash | ||
| ``` | ||
|
|
||
| 3. The Docker container can also be used with Singularity (as a regular user). | ||
| 1. Pull the container to your system with | ||
| ``` | ||
| > singularity pull docker://katrinexperiment/kassiopeia | ||
| ``` | ||
| 2. Open a shell inside the container with | ||
| ``` | ||
| > singularity shell docker://katrinexperiment/kassiopeia | ||
| ``` | ||
| or (if a local copy is available already) | ||
| ``` | ||
| > singularity shell kassiopeia-latest.sif | ||
| ``` | ||
|
|
||
| 4. Build the container locally with | ||
| ``` | ||
| > sudo docker build -t katrinexperiment/kassiopeia . | ||
| ``` | ||
| an (optionally) upload the local container to DockerHub with | ||
| ``` | ||
| > sudo docker push katrinexperiment/kassiopeia | ||
| ``` | ||
|
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|
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| Documentation | ||
| -------------------------------------------------- | ||
| --------------- | ||
|
|
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| 1. Documentation distributed with Kasper | ||
| A. This README file | ||
| B. The Kasper Documentation Center is an HTML page that will | ||
| lead you to all of the documentation that is included | ||
| in the Kasper distribution: | ||
| http://katrin-experiment.github.io/Kassiopeia/index.html | ||
| 1. Documentation distributed with Kasper | ||
| 1. This `README.md` file | ||
| 2. The Kassiopeia documentation is an HTML page hosted on GitHub | ||
| that will guide you through the installation process and | ||
| explains how to get started with your first simulation: | ||
| http://katrin-experiment.github.io/Kassiopeia/index.html | ||
|
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|
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| -------------------------------------------------- | ||
| Getting help | ||
| -------------------------------------------------- | ||
|
|
||
| -------------- | ||
|
|
||
| Primary email contacts: | ||
| Kasper development list: [email protected] | ||
| Jan Behrens: [email protected] | ||
| Nicholas Buzinsky: [email protected] | ||
| Primary email contacts: | ||
| * Kasper development list: [email protected] | ||
| * Jan Behrens: [email protected] | ||
| * Nicholas Buzinsky: [email protected] | ||