pyproject.toml

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "barspoon"
version = "2.3.0"
requires-python = ">=3.10"
authors = [
    { name="Marko van Treeck", email="markovantreeck@gmail.com" },
]
description = "A transformer architecture for histopathological images"
readme = "README.md"
classifiers = [
    "Programming Language :: Python :: 3",
    "Operating System :: POSIX :: Linux",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
]
dependencies = [
    "h5py~=3.8",
    "jaxtyping~=0.2.21",
    "matplotlib~=3.7",
    "numpy~=1.24",
    "openpyxl~=3.1",
    "packaging~=23.1",
    "pandas~=2.0",
    "scikit-learn~=1.2",
    "tomli~=2.0",   # replace with stdlib `tomllib` once 3.11 becomes necessary
    "torch~=2.0",
    "torchmetrics~=0.11.4",
    "pytorch-lightning~=2.0",
    "openslide-python~=1.3",
]

[project.urls]
"Homepage" = "https://github.com/KatherLab/barspoon-transformer"
"Bug Tracker" = "https://github.com/KatherLab/barspoon-transformer/issues"

[project.scripts]
"barspoon-train" = "barspoon.train:main"
"barspoon-deploy" = "barspoon.deploy:main"
"barspoon-crossval" = "barspoon.crossval:main"
"barspoon-heatmaps" = "barspoon.heatmaps:main"
"barspoon-gen-target-file" = "barspoon.target_file:main"