From e186d876b3ce43b503eddfb0d8a3de448a932151 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jon=20Haitz=20Legarreta=20Gorro=C3=B1o?= Date: Fri, 10 Nov 2023 20:37:46 -0500 Subject: [PATCH] DOC: Transfer the wiki 3rd party apps page to Markdown documentation Transfer the wiki 3rd party applications page to Markdown documentation: https://itk.org/Wiki/ITK/Third_Party_Applications: - Update the links and explanations as necessary. - Remove mentions to unmaintained projects; remove the mention of ITK packages for Ubuntu, as they no longer exist. - Adapt the utilities secion to include only maintained tools. --- Documentation/docs/index.md | 1 + .../docs/learn/third_party_applications.md | 86 +++++++++++++++++++ 2 files changed, 87 insertions(+) create mode 100644 Documentation/docs/learn/third_party_applications.md diff --git a/Documentation/docs/index.md b/Documentation/docs/index.md index d74f4535dda..f5afe29c692 100644 --- a/Documentation/docs/index.md +++ b/Documentation/docs/index.md @@ -36,6 +36,7 @@ Software Guide learn/faq.md learn/dicom.md learn/courses.md +learn/third_party_applications.md learn/fda_off_the_shelf_sw_guidelines.md ``` diff --git a/Documentation/docs/learn/third_party_applications.md b/Documentation/docs/learn/third_party_applications.md new file mode 100644 index 00000000000..681f7cc6b6c --- /dev/null +++ b/Documentation/docs/learn/third_party_applications.md @@ -0,0 +1,86 @@ +# Third-party applications + +This page lists some the applications that are known to use ITK. + +Please, [add your own project](../README.md) details if your +application uses ITK in some way (whether built in or by plugin). + +### Applications + +- [**Analyze**](https://analyzedirect.com/) software from + Mayo Clinic BIR. +- [**BioImage Suite**](https://bioimagesuiteweb.github.io/webapp/) integrated image + analysis software suite developed at Yale University. +- [**BioimageXD**](https://www.bioimagexd.net/) is a free open-source + software package for analyzing, processing and visualizing + multi-dimensional microscopy images. +- [**MedINRIA**](https://med.inria.fr/) is a multi-platform medical + image processing and visualization software developed within the + Asclepios research project, at INRIA Sophia-Antipolis. +- [**Osirix**](https://www.osirix-viewer.com/) open-source medical + imaging navigation and visualization tool for DICOM data. +- [**Seg3D**](https://www.sci.utah.edu/cibc-software/seg3d.html) is a + volume segmentation and processing tool developed by the NIH Center + for Integrative Biomedical Computing at the University of Utah + Scientific Computing and Imaging (SCI) Institute. +- [**3D Slicer**](https://www.slicer.org/) is a free, open-source + software for visualization, processing, segmentation, registration, + and analysis of medical, biomedical, and other 3D images and meshes; + and planning and navigating image-guided procedures. +- [**ITK-SNAP**](http://www.itksnap.org/pmwiki/pmwiki.php) is a free, + open-source, multi-platform software application used to segment + structures in 3D and 4D biomedical images. +- [**VAA3D**](https://home.penglab.com/proj/vaa3d/home/index.html) + open-source, multi-dimensional data visualization and analysis. +- [**VolView**](https://volview.kitware.com/) is an open-source + radiological viewer developed for clinical professionals. +- [**VV**](https://www.creatis.insa-lyon.fr/rio/vv) is an open-source + and cross platform image viewer, designed for fast and simple + visualization of spatio-temporal images: 2D, 2D+t, 3D and 3D+t (or + 4D) images. + +### Visual/dataflow programming {#visualdataflow_programming} + +- [**DeVIDE**](https://graphics.tudelft.nl/devide/) is the Delft + Visualization Development Environment, a cross-platform software + framework that provides infrastructure for the rapid creation, + testing and application of modular image processing and + visualisation algorithm implementations. +- [**MeVisLab**](https://www.mevislab.de/) is a modular framework + for image processing research and development with a special + focus on medical imaging. +- [**SCIRun**](https://www.sci.utah.edu/cibc-software/scirun.html) is a + Problem Solving Environment (PSE), for modeling, simulation and + visualization of scientific problems. +- [**Voreen**](https://www.uni-muenster.de/Voreen/) is an open-source + rapid application development framework for the interactive + visualization and analysis of multi-modal volumetric data sets. + +### Frameworks + +- [**Elastix**](https://elastix.lumc.nl/) is a toolbox for rigid and + nonrigid registration of images. +- [**GIMIAS**](https://link.springer.com/chapter/10.1007/978-3-642-01932-6_45) was + an open-source framework for efficient development of research tools + and clinical prototypes. +- [**MARVIN**](https://www.sciencedirect.com/science/article/abs/pii/S0169260708000965) + was a C++ application framework for rapid and simple development of medical + applications, part of [NCCR "Co-Me - Computer Aided and Image Guided Medical Interventions"](https://www.snf.ch/en/9ihBpawyw4Fro4Y9/page/researchinFocus/nccr/nccr-co-me/). +- [**MITK**](https://www.mitk.org/wiki/The_Medical_Imaging_Interaction_Toolkit_(MITK)) + is a free open-source software for the development of interactive + medical image processing software. +- [**Orfeo Toolbox**](https://www.orfeo-toolbox.org/) is an open-source + project for state-of-the-art remote sensing. + +### Other utilities and helpers + +ITK's features are available to MATLAB without requiring building the +sources, as all the functionality is expsed through ITK's Python +packages and remote module Python packages. + +Currently maintained command line tools and wrappers around ITK +include: + +- The [c3d command line tools](http://www.itksnap.org/pmwiki/pmwiki.php?n=Documentation.CommandLine) + developed in the context of ITK-SNAP. +- The CLI applications maintained in the [ITKTubeTK project](https://github.com/InsightSoftwareConsortium/ITKTubeTK).