ModuleNotFoundError: No module named 'numpy._typing'

[ZhengJIN94]

"ModuleNotFoundError: No module named 'numpy._typing'"

This error was occurred when I tried to import gene_trajectory.compute_gene_distance_cmd.

Which numpy version should I use?

Now, I am using 1.23.1

Thanks a lot!

[fra-pcmgf]

Hi @ZhengJIN94,
At the moment, the best version is 1.26.4.
I updated the requirements to numpy > 1.25 since we use some feature more advanced 1.23, so if you try to upgrade gene-trajectory it should also upgrade numpy.
Note that the current version of scanpy (1.10.2) requires numpy <2, so be careful not to update to 2.0 (you should see an warning in pip if you do).