environment_linux.yml

name: ggc_env
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python>=3.9
  - cxx-compiler
  - pytorch-cpu=1.10
  - mkl-devel
  - tbb-devel
  - boost-cpp
  - pip
  - numpy
  - scipy
  - pandas
  - bifrost
  - biopython=1.80
  - bcbio-gff
  - diamond>=2.0
  - hmmer
  - mafft
  - snp-sites
  - zlib
  - pthread-stubs
  - matplotlib
  - openblas
  - intbitset
  - networkx
  - pybind11
  - uncertainties
  - eigen=3.3
  - cmake>=3.10
  - libgomp
  - protobuf
  - llvm-openmp
  - tqdm
  - setuptools
  - make
  - seaborn
  - rapidnj
  - python-edlib
  - joblib
  - gffutils
  - cd-hit
  - python-wget