Graph Network Simulator (GNS)

Krishna Kumar, The University of Texas at Austin.

Joseph Vantassel, Texas Advanced Computing Center, UT Austin.

Run GNS

Training

python3 -m gns.train --data_path="<input-training-data-path>" --model_path="<path-to-load-save-model-file>" --output_path="<path-to-save-output>" -ntraining_steps=100

Resume training

To resume training specify model_file and train_state_file:

python3 -m gns.train --data_path="<input-training-data-path>" --model_path="<path-to-load-save-model-file>" --output_path="<path-to-save-output>"  --model_file="model.pt" --train_state_file="train_state.pt" -ntraining_steps=100

Rollout

python3 -m gns.train --mode="rollout" --data_path="<input-data-path>" --model_path="<path-to-load-save-model-file>" --output_path="<path-to-save-output>" --model_file="model.pt" --train_state_file="train_state.pt"

Render

 python3 -m gns.render_rollout --rollout_path="<path-containing-rollout-file>/rollout_0.pkl" 

The renderer also writes .vtu files to visualize in ParaView.

GNS prediction of Sand rollout after training for 2 million steps.

Datasets

The data loader provided with this PyTorch implementation utilizes the more general .npz format. The .npz format includes a list of tuples of arbitrary length where each tuple is for a different training trajectory and is of the form (position, particle_type). position is a 3-D tensor of shape (n_time_steps, n_particles, n_dimensions) and particle_type is a 1-D tensor of shape (n_particles).

The dataset contains:

• Metadata file with dataset information (sequence length, dimensionality, box bounds, default connectivity radius, statistics for normalization, ...):

• npz containing data for all trajectories (particle types, positions, global context, ...):

We provide the following datasets:

• WaterDropSample (smallest dataset)
• Sand
• SandRamps

Download the dataset from DesignSafe DataDepot. If you are using this dataset please cite Vantassel and Kumar., 2022

Building environment on TACC LS6 and Frontera

• to setup a virtualenv

sh ./build_venv.sh

• check tests run sucessfully.
• start your environment

source start_venv.sh 

Inspiration

PyTorch version of Graph Network Simulator based on https://arxiv.org/abs/2002.09405 and https://github.com/deepmind/deepmind-research/tree/master/learning_to_simulate.

Acknowledgement

This code is based upon work supported by the National Science Foundation under Grant OAC-2103937.

Citation

Repo

Kumar, K., & Vantassel, J. (2022). Graph Network Simulator: v1.0.1 (Version v1.0.1) [Computer software]. https://doi.org/10.5281/zenodo.6658322

Dataset

Vantassel, Joseph; Kumar, Krishna (2022) “Graph Network Simulator Datasets.” DesignSafe-CI. https://doi.org/10.17603/ds2-0phb-dg64 v1