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pangea-api download sample list without GRP_NAME #76

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alnf opened this issue Feb 7, 2022 · 2 comments
Open

pangea-api download sample list without GRP_NAME #76

alnf opened this issue Feb 7, 2022 · 2 comments

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@alnf
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alnf commented Feb 7, 2022

Is it possible to download samples using --sample-manifest argument without specifying GRP_NAME, cause currently I have to iterate over all possible groups (since my samples ids list contains samples from different groups).

@dcdanko
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dcdanko commented Feb 7, 2022

Unfortunately this is not possible since sample names can be duplicated across groups. If you have a list with sample names and group names together it seems like this would be straightforward to script?

@alnf
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alnf commented Feb 9, 2022

Unfortunately, I didn't have all the group names, I found a workaround by specifying upper level group (which was same as organization name). Maybe it's a good solution for all such cases in the future? Since I understand group is an abstract concept, so you can create as many as you want?

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