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Support SoftwareRequirements #66

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LourensVeen opened this issue Dec 13, 2017 · 0 comments
Open
4 tasks

Support SoftwareRequirements #66

LourensVeen opened this issue Dec 13, 2017 · 0 comments
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@LourensVeen
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LourensVeen commented Dec 13, 2017

We need to be able to do 'module load' and 'conda activate' before running a CommandLineTool, so that the necessary software is available.

  • Study CWL SoftwareRequirements
  • Make a sub-syntax for module and Conda, or see what's there already esp. for the latter
  • Implement parsing the SoftwareRequirements
  • Extend cwltiny to load the software

Since both conda activate and module load modify the environment, probably the best (and certainly the easiest) way to implement this is to generate a shell script and execute that.

@LourensVeen LourensVeen added this to the 1.0 milestone Dec 14, 2017
@LourensVeen LourensVeen modified the milestones: 1.0, post-1.0 Jan 3, 2019
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