-
Notifications
You must be signed in to change notification settings - Fork 0
/
control.html
executable file
·35 lines (34 loc) · 1.74 KB
/
control.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
<!DOCTYPE html>
<html>
<head>
<title>Adding control</title>
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.4.2/jquery.min.js"></script>
<script src="https://d3js.org/d3.v5.min.js"></script>
<link rel="stylesheet" type="text/css" href="css/style.css">
<script type="text/javascript" src="js/menu.js"></script>
<script type="text/javascript" src="js/functions.js"></script>
<div id="header"></div>
</head>
<body>
<script>
$( document ).ready(function() {
$("#Menu").load("menu.html");
});
</script>
<div id="Menu"></div>
<!-- Use any element to open the sidenav -->
<span onclick="openNav()" style="color: chartreuse;background-color: black;"><B> ☰ Menu </B> </span>
<h3 align="center">Control sequence (optional)</h3>
<div id="main">
<div class="container" id="container">
<form>
<p>Cross sample contamination can be a problem when running several indexed samples in a same lane of a flowcell. To control for cross-sample contamination and adjust the default threshold of average read depth and coverage for virus detection by VDW, one can include a control sample containing a known virus at high concentration and unrelated to the sample under investigation. If included VWD will provide a separate output on genome coverage and sequencing depth of the control over all samples selected for the run.</p>
<label for="upload">Upload control sequence (fasta file)</label><br><br>
<input id="fileDialog" type="file" accept=".fasta,.fa" nwworkingdir="C:\" /><br><br>
<input type="submit" value="Submit" onclick="upload_control('#fileDialog','databases')"><br><br><br>
<div id="subject" name="subject"></div>
</form>
</div>
</div>
</body>
</html>