raxml_info_model.txt

This is RAxML version 8.2.9 released by Alexandros Stamatakis on July 20 2016.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Sarah Lutteropp   (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor    (UF)


Alignment has xxxALNPATTERNSxxx distinct alignment patterns

Found 0 invariant alignment patterns that correspond to 0 columns
Proportion of gaps and completely undetermined characters in this alignment: xxxPERCENTGAPSxxx

RAxML rapid hill-climbing mode

Using 1 distinct models/data partitions with joint branch length optimization


Executing 1 inferences on the original alignment using 1 user-specified trees

All free model parameters will be estimated by RAxML
ML estimate of 25 per site rate categories

Likelihood of final tree will be evaluated and optimized under GAMMA+P-Invar

GAMMA Model parameters will be estimated up to an accuracy of 0.0010000000 Log Likelihood units

Partition: 0
Alignment Patterns: xxxALNPATTERNSxxx
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR




RAxML was called as follows:

xxxRAXMLCALLEDASxxx


Base frequencies: xxxPIAxxx xxxPICxxx xxxPIGxxx xxxPITxxx 

Inference[0]: Time 12933.863505 CAT-based likelihood -2013884.446370, best rearrangement setting 25
alpha[0]: xxxALPHAxxx rates[0] ac ag at cg ct gt: xxxACGTRxxx xxxAGGTRxxx xxxATGTRxxx xxxCGGTRxxx xxxCTGTRxxx xxxGTGTRxxx 


NOT conducting any final model optimizations on all 1 trees under CAT-based model ....

REMEMBER that CAT-based likelihood scores are meaningless!

Program execution info written to xxxEXECINFOWRITTENxxx
Overall execution time: 3600.00000 secs or 1.000000 hours or 0.041666667 days