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mgx_default_taxonomy.xml
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<graph description="" name="unnamed" service="MGX">
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<configuration_items/>
<typeParameters/>
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<typeParameters>
<type name="Conveyor.List.List`1">
<type name="Conveyor.Blast.BlastHit`2">
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</type>
</typeParameters>
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<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</typeParameters>
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<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
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<configuration_items/>
<typeParameters>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
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<type name="Conveyor.Blast.BlastHit`2">
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</typeParameters>
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</typeParameters>
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<type name="Conveyor.Math.ULong"/>
<type name="Conveyor.Math.ULong"/>
</typeParameters>
</node>
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<configuration_item name="chunkSize" value="100000"/>
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<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
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<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
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<configuration_items/>
<typeParameters>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
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<typeParameters/>
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<typeParameters/>
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<configuration_item name="value" value="NCBI"/>
</configuration_items>
<typeParameters/>
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<configuration_item name="delimiter" value="_"/>
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<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
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<configuration_item name="attrStruct" value="HIERARCHICAL"/>
<configuration_item name="attrType" value="DISCRETE"/>
</configuration_items>
<typeParameters/>
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<type name="Conveyor.MGX.MGXJob"/>
</typeParameters>
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<typeParameters>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
<node id="101" name="" type="Conveyor.Taxonomy.NCBI.GetMajorRankedParent" x="630" y="890">
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<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
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<configuration_item name="database" value="refseq_protein.pal"/>
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</node>
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<configuration_item name="evalueCutoff" user_description="E-Value cutoff for homology search" user_name="E-Value cutoff" value="1e-5"/>
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<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
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<configuration_item name="threshold" user_description="relative identity with regard to best hit to keep" user_name="relative identity" value="0.8"/>
</configuration_items>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
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<type name="Conveyor.Blast.BlastHit`2">
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</typeParameters>
</node>
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<configuration_item name="database" value="RefSeq-Microbial"/>
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</configuration_items>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
</typeParameters>
</node>
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<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
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<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
<node id="271" name="" type="Conveyor.Pair.FirstElement`2" x="-1033" y="156">
<configuration_items/>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
<node id="272" name="" type="Conveyor.Pair.SecondElement`2" x="-697" y="151">
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<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
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<node id="273" name="" type="Conveyor.Taxonomy.NCBI.GetMajorRankedParent" x="-598" y="240">
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<typeParameters/>
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<node id="275" name="" type="Conveyor.MGX.CreateHierarchicalMGXAttribute`1" x="-827" y="428">
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<typeParameters>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
<node id="276" name="" type="Conveyor.Taxonomy.NCBI.GetMajorRankedParent" x="-680" y="608">
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<typeParameters/>
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<configuration_item name="attrStruct" value="HIERARCHICAL"/>
<configuration_item name="attrType" value="DISCRETE"/>
</configuration_items>
<typeParameters/>
</node>
<node id="278" name="" type="Conveyor.Tree.GetParent`1" x="-863" y="604">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Taxonomy.NCBI.Taxon"/>
</typeParameters>
</node>
<node id="279" name="" type="Conveyor.Text.StringGenerator" x="-989" y="491">
<configuration_items>
<configuration_item name="value" value="NCBI_"/>
</configuration_items>
<typeParameters/>
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<configuration_item name="delimiter" value=""/>
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<typeParameters/>
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<configuration_item name="processAhead" value="300000001"/>
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<type name="Conveyor.MGX.MGXSequence"/>
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<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
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<configuration_items>
<configuration_item name="threads" value="2"/>
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</configuration_items>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
</nodes>
<links>
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<link from_connector="result" from_node="140" to_connector="input" to_node="29"/>
<link from_connector="taxons" from_node="63" to_connector="vertices" to_node="57"/>
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<link from_connector="diamondDatabase" from_node="285" to_connector="database" to_node="286"/>
<link from_connector="filtered" from_node="178" to_connector="query" to_node="286"/>
</links>
</graph>