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pks.xml
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<graph description="" name="unnamed" service="MGX">
<composites/>
<nodes>
<node id="9" name="mgx" type="Conveyor.MGX.GetMGXJob" x="50" y="100">
<configuration_items/>
<typeParameters/>
</node>
<node id="10" name="" type="Conveyor.MGX.GetSequences" x="260" y="40">
<configuration_items/>
<typeParameters/>
</node>
<node id="13" name="" type="Conveyor.Blast.BlastvsDB`2" x="580" y="30">
<configuration_items>
<configuration_item name="useComplexityFilter" value="0"/>
<configuration_item name="chunkSize" value="2500"/>
<configuration_item name="blastType" value="blastx"/>
</configuration_items>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
<node id="15" name="" type="Conveyor.Logic.PassFilter`1" x="580" y="130">
<configuration_items/>
<typeParameters>
<type name="Conveyor.List.List`1">
<type name="Conveyor.Blast.BlastHit`2">
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</type>
</typeParameters>
</node>
<node id="16" name="" type="Conveyor.List.HasElements`1" x="700" y="140">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Blast.BlastHit`2">
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</typeParameters>
</node>
<node id="20" name="" type="Conveyor.List.GetElement`1" x="520" y="200">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Blast.BlastHit`2">
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</type>
</typeParameters>
</node>
<node id="21" name="" type="Conveyor.Blast.FilterBlastHits`2" x="570" y="80">
<configuration_items>
<configuration_item user_name="E-Value cutoff" user_description="E-Value cutoff for homology search" name="evalueCutoff" value="1e-3"/>
</configuration_items>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
<node id="29" name="" type="Conveyor.Blast.GetQueryFromBlastHit`2" x="60" y="400">
<configuration_items/>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
<node id="99" name="" type="Conveyor.Math.IntegerOps.IntegerGenerator" x="900" y="190">
<configuration_items>
<configuration_item name="value" value="0"/>
</configuration_items>
<typeParameters/>
</node>
<node id="107" name="" type="Homology.GetQueryRange" x="360" y="340">
<configuration_items/>
<typeParameters/>
</node>
<node id="108" name="" type="Conveyor.Pair.FirstElement`2" x="280" y="400">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Math.Integer"/>
<type name="Conveyor.Math.Integer"/>
</typeParameters>
</node>
<node id="109" name="" type="Conveyor.Pair.SecondElement`2" x="430" y="400">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Math.Integer"/>
<type name="Conveyor.Math.Integer"/>
</typeParameters>
</node>
<node id="110" name="" type="Conveyor.MGX.AnnotateAttribute" x="410" y="930">
<configuration_items/>
<typeParameters/>
</node>
<node id="111" name="" type="Conveyor.Math.ULongOps.IntToULong" x="270" y="460">
<configuration_items/>
<typeParameters/>
</node>
<node id="112" name="" type="Conveyor.Math.ULongOps.IntToULong" x="470" y="460">
<configuration_items/>
<typeParameters/>
</node>
<node id="117" name="" type="Conveyor.MGX.CreateMGXAttribute" x="800" y="1070">
<configuration_items/>
<typeParameters/>
</node>
<node id="118" name="" type="Conveyor.MGX.CreateMGXAttributeType" x="1170" y="960">
<configuration_items>
<configuration_item name="attrType" value="DISCRETE"/>
<configuration_item name="attrStruct" value="BASIC"/>
</configuration_items>
<typeParameters/>
</node>
<node id="130" name="" type="Conveyor.Core.Repeat`1" x="760" y="200">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Math.Integer"/>
</typeParameters>
</node>
<node id="144" name="" type="Conveyor.Core.Repeat`1" x="1063" y="1026">
<configuration_items/>
<typeParameters>
<type name="Conveyor.MGX.MGXAttributeType"/>
</typeParameters>
</node>
<node id="145" name="" type="Conveyor.Blast.LocalAADatabase" x="850" y="30">
<configuration_items>
<configuration_item name="databasePath" value="/vol/biodb/local_databases/MGX/misc/pks.faa"/>
</configuration_items>
<typeParameters/>
</node>
<node id="147" name="" type="Conveyor.Blast.GetSubject`2" x="780" y="280">
<configuration_items/>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
<node id="148" name="" type="Sequence.GetDescription" x="1020" y="480">
<configuration_items/>
<typeParameters/>
</node>
<node id="149" name="" type="Conveyor.Text.StringGenerator" x="1157" y="720">
<configuration_items>
<configuration_item name="value" value="pks_domain"/>
</configuration_items>
<typeParameters/>
</node>
<node id="150" name="" type="Conveyor.Core.Repeat`1" x="1196" y="816">
<configuration_items/>
<typeParameters>
<type name="Conveyor.Text.String"/>
</typeParameters>
</node>
<node id="151" name="" type="Conveyor.Logic.FlowThrottle`1" x="420" y="50">
<configuration_items>
<configuration_item name="processAhead" value="8751000"/>
</configuration_items>
<typeParameters>
<type name="Conveyor.MGX.MGXSequence"/>
</typeParameters>
</node>
<node id="152" name="" type="Conveyor.Blast.FillBlastDBSequences`1" x="880" y="350">
<configuration_items>
<configuration_item name="chunkSize" value="10000"/>
</configuration_items>
<typeParameters>
<type name="Conveyor.Blast.AABlastDatabaseSequence"/>
</typeParameters>
</node>
</nodes>
<links>
<link from_connector="output" from_node="9" to_connector="input" to_node="10"/>
<link from_connector="output" from_node="9" to_connector="jobIn" to_node="118"/>
<link from_connector="sequenceOut" from_node="10" to_connector="input" to_node="151"/>
<link from_connector="result" from_node="13" to_connector="input" to_node="21"/>
<link from_connector="check_out" from_node="15" to_connector="input" to_node="16"/>
<link from_connector="output" from_node="15" to_connector="firstArgument" to_node="20"/>
<link from_connector="output" from_node="16" to_connector="check_in" to_node="15"/>
<link from_connector="result" from_node="20" to_connector="input" to_node="29"/>
<link from_connector="result" from_node="20" to_connector="input" to_node="107"/>
<link from_connector="result" from_node="20" to_connector="input" to_node="147"/>
<link from_connector="output" from_node="21" to_connector="input" to_node="15"/>
<link from_connector="output" from_node="21" to_connector="trigger" to_node="151"/>
<link from_connector="output" from_node="29" to_connector="seqIn" to_node="110"/>
<link from_connector="output" from_node="99" to_connector="input" to_node="130"/>
<link from_connector="output" from_node="107" to_connector="input" to_node="108"/>
<link from_connector="output" from_node="107" to_connector="input" to_node="109"/>
<link from_connector="output" from_node="108" to_connector="input" to_node="111"/>
<link from_connector="output" from_node="109" to_connector="input" to_node="112"/>
<link from_connector="output" from_node="111" to_connector="startIn" to_node="110"/>
<link from_connector="output" from_node="112" to_connector="stopIn" to_node="110"/>
<link from_connector="output" from_node="117" to_connector="attributeIn" to_node="110"/>
<link from_connector="output" from_node="118" to_connector="input" to_node="144"/>
<link from_connector="output" from_node="130" to_connector="secondArgument" to_node="20"/>
<link from_connector="output" from_node="144" to_connector="typeIn" to_node="117"/>
<link from_connector="database" from_node="145" to_connector="database" to_node="13"/>
<link from_connector="output" from_node="147" to_connector="input" to_node="152"/>
<link from_connector="output" from_node="148" to_connector="valueIn" to_node="117"/>
<link from_connector="output" from_node="149" to_connector="input" to_node="150"/>
<link from_connector="output" from_node="150" to_connector="name" to_node="118"/>
<link from_connector="output" from_node="151" to_connector="query" to_node="13"/>
<link from_connector="output" from_node="152" to_connector="input" to_node="148"/>
</links>
</graph>