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{ | ||
"$schema": "http://json-schema.org/draft-04/schema#", | ||
"type": "object", | ||
"properties": { | ||
"sample": { | ||
"type": "object", | ||
"properties": { | ||
"idc_version": { | ||
"type": ["string", "number"] | ||
}, | ||
"data": { | ||
"type": "array", | ||
"minItems": 1, | ||
"items": { | ||
"type": "object", | ||
"properties": { | ||
"SeriesInstanceUID": { | ||
"type": "string", | ||
"pattern": "^[\\d\\.]+$" | ||
}, | ||
"aws_url": { | ||
"type": "string", | ||
"pattern": "^s3://[\\w\\-/]+/\\*$" | ||
}, | ||
"url": { | ||
"type": "string", | ||
"format": "uri" | ||
}, | ||
"description": { | ||
"type": "string" | ||
}, | ||
"path": { | ||
"type": "string", | ||
"pattern": "^[^\\/][\\w\\-\\.\\/]+$" | ||
} | ||
}, | ||
"oneOf": [ | ||
{ | ||
"required": [ | ||
"SeriesInstanceUID", | ||
"aws_url", | ||
"path" | ||
] | ||
}, | ||
{ | ||
"required": [ | ||
"url", | ||
"path" | ||
] | ||
} | ||
] | ||
} | ||
} | ||
}, | ||
"required": [ | ||
"idc_version", | ||
"data" | ||
] | ||
}, | ||
"reference": { | ||
"type": "object", | ||
"properties": { | ||
"url": { | ||
"type": "string", | ||
"format": "uri" | ||
} | ||
}, | ||
"required": [ | ||
"url" | ||
] | ||
} | ||
}, | ||
"required": [ | ||
"sample", | ||
"reference" | ||
] | ||
} |
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import sys, os, yaml, json, jsonschema | ||
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YAML_TEST_DEFINITION_SCHEMA_FILE = ".github/schemas/testmodel.schema.json" | ||
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def extract_yaml_test_definition(comment: str): | ||
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# find a code block starting with ```yaml and ending with ``` | ||
start = comment.find("```yaml") | ||
end = comment.find("```", start + 1) | ||
if start == -1 or end == -1: | ||
raise Exception("No YAML code block found in comment") | ||
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# extract the code block | ||
yaml_code = comment[start:end] | ||
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# remove the code block markers | ||
yaml_code = yaml_code.replace("```yaml", "").strip() | ||
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return yaml_code | ||
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def validate_yaml_test_definition(yaml_str: str): | ||
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# load yaml into dict | ||
test_definition = yaml.safe_load(yaml_str) | ||
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# load schema | ||
with open(YAML_TEST_DEFINITION_SCHEMA_FILE, "r") as f: | ||
schema = json.load(f) | ||
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# validate | ||
jsonschema.validate(test_definition, schema) | ||
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def set_action_output(output_name, value) : | ||
"""Sets the GitHub Action output. | ||
Keyword arguments: | ||
output_name - The name of the output | ||
value - The value of the output | ||
""" | ||
if "GITHUB_OUTPUT" in os.environ : | ||
with open(os.environ["GITHUB_OUTPUT"], "a") as f : | ||
print("{0}={1}".format(output_name, value), file=f) | ||
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if __name__ == "__main__": | ||
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try: | ||
# get comment body from first argument | ||
comment = sys.argv[1] | ||
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# print comment | ||
print(f"Comment ----------------------") | ||
print(comment) | ||
print() | ||
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# extract yaml test definition | ||
yaml_str = extract_yaml_test_definition(comment) | ||
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# validate yaml test definition | ||
validate_yaml_test_definition(yaml_str) | ||
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# print yaml | ||
print(f"Test Definition --------------") | ||
print(yaml_str) | ||
print() | ||
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# print success message | ||
print("YAML test definition is valid") | ||
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# set environment variable for following steps | ||
set_action_output("test_report", "passed") | ||
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except Exception as e: | ||
# set environment variable for following steps | ||
set_action_output("test_report", "failed") | ||
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# print error message | ||
print("YAML test definition is invalid") | ||
print(e) | ||
|
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name: MHub Contribution Magic Keywords | ||
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on: | ||
issue_comment: | ||
types: [created, edited] | ||
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permissions: | ||
pull-requests: write | ||
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jobs: | ||
request_review: | ||
if: ${{ github.event.issue.pull_request && startsWith(github.event.comment.body, '/review')}} | ||
name: Request Review | ||
runs-on: [ubuntu-latest] | ||
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steps: | ||
- name: Add Request Review Label | ||
uses: actions-ecosystem/action-add-labels@v1 | ||
with: | ||
labels: REQUEST REVIEW | ||
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request_test: | ||
if: ${{ github.event.issue.pull_request && startsWith(github.event.comment.body, '/test') }} | ||
name: Request Test | ||
runs-on: [ubuntu-latest] | ||
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steps: | ||
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# Checkout the latest code from the repo | ||
- name: Checkout repo | ||
uses: actions/checkout@v4 | ||
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# Setup which version of Python to use | ||
- name: Setup Python | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: 3.8 | ||
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# install python dependencies | ||
- name: Install Python dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install jsonschema PyYAML | ||
# Display the Python version being used | ||
- name: Display Python version | ||
run: python -c "import sys; print(sys.version)" | ||
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- name: Run check comment script | ||
id: check_comment | ||
env: | ||
COMMENT: ${{ github.event.comment.body }} | ||
run: python .github/scripts/comment_check.py "$COMMENT" | ||
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- name: Add TEST REQUESTED Label | ||
uses: actions-ecosystem/action-add-labels@v1 | ||
if: ${{ steps.check_comment.outputs.test_report == 'passed' }} | ||
with: | ||
labels: TEST REQUESTED | ||
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- name: Remove INVALID TEST REQUEST Label | ||
uses: actions-ecosystem/action-remove-labels@v1 | ||
if: ${{ steps.check_comment.outputs.test_report == 'passed' }} | ||
with: | ||
labels: INVALID TEST REQUEST | ||
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- name: Remove TEST REQUESTED Label | ||
uses: actions-ecosystem/action-remove-labels@v1 | ||
if: ${{ steps.check_comment.outputs.test_report == 'failed' }} | ||
with: | ||
labels: TEST REQUESTED | ||
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- name: Add INVALID TEST REQUEST Label | ||
uses: actions-ecosystem/action-add-labels@v1 | ||
if: ${{ steps.check_comment.outputs.test_report == 'failed' }} | ||
with: | ||
labels: INVALID TEST REQUEST |
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MIT License | ||
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Copyright (c) 2023 MHub.ai | ||
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Permission is hereby granted, free of charge, to any person obtaining a copy | ||
of this software and associated documentation files (the "Software"), to deal | ||
in the Software without restriction, including without limitation the rights | ||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
copies of the Software, and to permit persons to whom the Software is | ||
furnished to do so, subject to the following conditions: | ||
|
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The above copyright notice and this permission notice shall be included in all | ||
copies or substantial portions of the Software. | ||
|
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
SOFTWARE. |
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