change folder name

MHubAI · Jul 30, 2024 · c9a1cfe · c9a1cfe
1 parent 1d77d3a
commit c9a1cfe
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Showing 6 changed files with 4 additions and 4 deletions.
diff --git a/...ls/bamf_nnunet_ct_lung/config/default.yml → ..._nnunet_ct_lungnodules/config/default.yml b/...ls/bamf_nnunet_ct_lung/config/default.yml → ..._nnunet_ct_lungnodules/config/default.yml
@@ -33,4 +33,4 @@ modules:
 
   DataOrganizer:
     targets:
-    - dicomseg-->[i:sid]/bamf_ct_lung_nodule.seg.dcm
+    - dicomseg-->[i:sid]/bamf_nnunet_ct_lungnodules.seg.dcm
diff --git a/...amf_nnunet_ct_lung/dockerfiles/Dockerfile → ...net_ct_lungnodules/dockerfiles/Dockerfile b/...amf_nnunet_ct_lung/dockerfiles/Dockerfile → ...net_ct_lungnodules/dockerfiles/Dockerfile
@@ -12,7 +12,7 @@ RUN pip3 install --no-cache-dir nnunetv2==2.0
 
 # Clone the main branch of MHubAI/models
 ARG MHUB_MODELS_REPO
-RUN buildutils/import_mhub_model.sh bamf_ct_lung_nodule ${MHUB_MODELS_REPO}
+RUN buildutils/import_mhub_model.sh bamf_nnunet_ct_lungnodules ${MHUB_MODELS_REPO}
 
 # Pull weights into the container
 ENV WEIGHTS_DIR=/root/.nnunet/nnUNet_models/nnUNet/
@@ -28,4 +28,4 @@ ENV WEIGHTS_FOLDER=$WEIGHTS_DIR
 
 # Default run script
 ENTRYPOINT ["mhub.run"]
-CMD ["--config", "/app/models/bamf_ct_lung_nodule/config/default.yml"]
+CMD ["--config", "/app/models/bamf_nnunet_ct_lungnodules/config/default.yml"]
diff --git a/models/bamf_nnunet_ct_lung/meta.json → models/bamf_nnunet_ct_lungnodules/meta.json b/models/bamf_nnunet_ct_lung/meta.json → models/bamf_nnunet_ct_lungnodules/meta.json
@@ -1,6 +1,6 @@
 {
   "id": "",
-  "name": "bamf_nnunet_ct_lung",
+  "name": "bamf_nnunet_ct_lungnodules",
   "title": "AIMI CT Lung and Nodules",
   "summary": {
     "description": "An nnU-Net based model to segment Lung and Nodules (3mm-30mm) from CT scans",

diff --git a/...unet_ct_lung/utils/BamfProcessorRunner.py → ..._lungnodules/utils/BamfProcessorRunner.py b/...unet_ct_lung/utils/BamfProcessorRunner.py → ..._lungnodules/utils/BamfProcessorRunner.py
diff --git a/...mf_nnunet_ct_lung/utils/NNUnetRunnerV2.py → ...et_ct_lungnodules/utils/NNUnetRunnerV2.py b/...mf_nnunet_ct_lung/utils/NNUnetRunnerV2.py → ...et_ct_lungnodules/utils/NNUnetRunnerV2.py
diff --git a/models/bamf_nnunet_ct_lung/utils/__init__.py → ...f_nnunet_ct_lungnodules/utils/__init__.py b/models/bamf_nnunet_ct_lung/utils/__init__.py → ...f_nnunet_ct_lungnodules/utils/__init__.py