diff --git a/models/bamf_nnunet_mr_liver/config/default.yml b/models/bamf_nnunet_mr_liver/config/default.yml index f0d0ee85..60780d48 100644 --- a/models/bamf_nnunet_mr_liver/config/default.yml +++ b/models/bamf_nnunet_mr_liver/config/default.yml @@ -25,7 +25,7 @@ modules: NNUnetRunner: in_data: nifti:mod=mr - nnunet_task: 'Task882_Liver_AMD' + nnunet_task: 'Task822_Liver_AMD' nnunet_model: '3d_fullres' roi: LIVER @@ -33,9 +33,9 @@ modules: DsegConverter: source_segs: 'nifti:mod=seg' + target_dicom: dicom:mod=mr model_name: 'Bamf NNUnet MR Liver' skip_empty_slices: True - json_config_path: '/app/models/bamf_nnunet_mr_liver/config/meta.json' DataOrganizer: targets: