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Issue in the libraries during running the initial step of tract segmentation #279

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AToub99 opened this issue Nov 4, 2024 · 0 comments

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@AToub99
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AToub99 commented Nov 4, 2024

I am running the following segment of the code:
"TractSeg -i my/path/my_diffusion_image.nii.gz
-o my/output/directory
--bvals my/other/path/my.bvals
--bvecs yet/another/path/my.bvec
--raw_diffusion_input"
However, I am facing this error:
"INTEL MKL ERROR: dlopen(/Users/aa/opt/anaconda3/lib/libmkl_intel_thread.1.dylib, 0x0009): Library not loaded: '@rpath/libiomp5.dylib'
OMP: Error #15: Initializing libiomp5.dylib, but found libomp.dylib already initialized."

I tried to solve it using different methods published such as "KMP_DUPLICATE_LIB_OK"]="TRUE" and "conda install nomkl --channel conda-forge" but the error persist.

Can please guide on the best way to solve this issue?

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