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picr module fails test #44

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colin-combe opened this issue Jan 9, 2017 · 0 comments
Open

picr module fails test #44

colin-combe opened this issue Jan 9, 2017 · 0 comments

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@colin-combe
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Failed tests:   getSWISSPROTAccessionFromSequence(psidev.psi.mi.jami.bridges.picr.PicrClientTest): expected:<4> but was:<0>
  getSWISSPROTAccession(psidev.psi.mi.jami.bridges.picr.PicrClientTest): expected:<4> but was:<0>
  getTREMBLAccession(psidev.psi.mi.jami.bridges.picr.PicrClientTest): expected:<41> but was:<40>
  getTREMBLAccessionFromSequence(psidev.psi.mi.jami.bridges.picr.PicrClientTest): expected:<41> but was:<40>

There was this error message eariler -


12:14:39.526 [main] ERROR p.p.mi.jami.bridges.picr.PicrClient - PICR could not work properly
com.sun.xml.internal.ws.client.ClientTransportException: The server sent HTTP status code 500: Internal Server Error
	at com.sun.xml.internal.ws.transport.http.client.HttpTransportPipe.createResponsePacket(HttpTransportPipe.java:266) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.transport.http.client.HttpTransportPipe.process(HttpTransportPipe.java:217) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.transport.http.client.HttpTransportPipe.processRequest(HttpTransportPipe.java:130) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.transport.DeferredTransportPipe.processRequest(DeferredTransportPipe.java:95) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber.__doRun(Fiber.java:1121) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber._doRun(Fiber.java:1035) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber.doRun(Fiber.java:1004) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber.runSync(Fiber.java:862) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.Stub.process(Stub.java:448) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SEIStub.doProcess(SEIStub.java:178) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:93) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:77) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SEIStub.invoke(SEIStub.java:147) ~[na:1.8.0_91]
	at com.sun.proxy.$Proxy34.getUPIForSequence(Unknown Source) ~[na:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClient.getUPEntriesForSequence(PicrClient.java:252) [classes/:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClient.getIdsForSequence(PicrClient.java:170) [classes/:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClient.getSwissprotIdsForSequence(PicrClient.java:195) [classes/:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClientTest.getSWISSPROTAccessionFromSequence(PicrClientTest.java:66) [test-classes/:na]
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_91]
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_91]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_91]
	at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_91]
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45) [junit-4.10.jar:na]
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) [junit-4.10.jar:na]
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42) [junit-4.10.jar:na]
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) [junit-4.10.jar:na]
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28) [junit-4.10.jar:na]
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263) [junit-4.10.jar:na]
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68) [junit-4.10.jar:na]
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.run(ParentRunner.java:300) [junit-4.10.jar:na]
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53) [surefire-junit4-2.10.jar:2.10]
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123) [surefire-junit4-2.10.jar:2.10]
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104) [surefire-junit4-2.10.jar:2.10]
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_91]
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_91]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_91]
	at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_91]
	at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164) [surefire-api-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110) [surefire-booter-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175) [surefire-booter-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107) [surefire-booter-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68) [surefire-booter-2.10.jar:2.10]
psidev.psi.mi.jami.bridges.12:15:09.503 [main] ERROR p.p.mi.jami.bridges.picr.PicrClient - PICR could not work properly
com.sun.xml.internal.ws.client.ClientTransportException: The server sent HTTP status code 500: Internal Server Error
	at com.sun.xml.internal.ws.transport.http.client.HttpTransportPipe.createResponsePacket(HttpTransportPipe.java:266) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.transport.http.client.HttpTransportPipe.process(HttpTransportPipe.java:217) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.transport.http.client.HttpTransportPipe.processRequest(HttpTransportPipe.java:130) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.transport.DeferredTransportPipe.processRequest(DeferredTransportPipe.java:95) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber.__doRun(Fiber.java:1121) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber._doRun(Fiber.java:1035) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber.doRun(Fiber.java:1004) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.api.pipe.Fiber.runSync(Fiber.java:862) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.Stub.process(Stub.java:448) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SEIStub.doProcess(SEIStub.java:178) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:93) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:77) ~[na:1.8.0_91]
	at com.sun.xml.internal.ws.client.sei.SEIStub.invoke(SEIStub.java:147) ~[na:1.8.0_91]
	at com.sun.proxy.$Proxy34.getUPIForAccession(Unknown Source) ~[na:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClient.getUPEntriesForAccession(PicrClient.java:153) [classes/:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClient.getIdsForAccession(PicrClient.java:107) [classes/:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClient.getSwissprotIdsForAccession(PicrClient.java:67) [classes/:na]
	at psidev.psi.mi.jami.bridges.picr.PicrClientTest.getSWISSPROTAccession(PicrClientTest.java:38) [test-classes/:na]
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_91]
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_91]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_91]
	at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_91]
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45) [junit-4.10.jar:na]
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) [junit-4.10.jar:na]
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42) [junit-4.10.jar:na]
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) [junit-4.10.jar:na]
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28) [junit-4.10.jar:na]
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:30) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263) [junit-4.10.jar:na]
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68) [junit-4.10.jar:na]
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222) [junit-4.10.jar:na]
	at org.junit.runners.ParentRunner.run(ParentRunner.java:300) [junit-4.10.jar:na]
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53) [surefire-junit4-2.10.jar:2.10]
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123) [surefire-junit4-2.10.jar:2.10]
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104) [surefire-junit4-2.10.jar:2.10]
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_91]
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_91]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_91]
	at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_91]
	at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164) [surefire-api-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110) [surefire-booter-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175) [surefire-booter-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:107) [surefire-booter-2.10.jar:2.10]
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:68) [surefire-booter-2.10.jar:2.10]
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