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Can this repo provide the standard mitab2.7 file? #8

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wenyuhaokikika opened this issue Dec 5, 2022 · 0 comments
Open

Can this repo provide the standard mitab2.7 file? #8

wenyuhaokikika opened this issue Dec 5, 2022 · 0 comments

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@wenyuhaokikika
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Thank you for psimi-maker-flattener,it is a very nice project
when i run xmlflattener for cancer PPI data from intAct with format psi2.5.

data comes from https://www.ebi.ac.uk/intact/download/datasets,
image
run sh bin/xmlflattener -mapping data/flattener-mapping-psi25.xml -xmlDocument /data/wenyuhao/code/PPI/psidev/psi/mi/tools/intAct/Cancer30/10068665.xml -o 10068665.mitab30,
The result of the operation is the following files
image
but it is not standard mitab2.7 format,it is missing the "Host organism(s)" eg. columns,and interactor need spoke.

Looking forward to your reply thank you~~~

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