fairstation_setup.sh

#!/usr/bin/env sh
# Before running the script, make it executable chmod +x command
# method to download and setup environment
ubuntu_env_setup(){
	sudo apt update
	sudo apt install apt-transport-https git \
	  ca-certificates curl gnupg lsb-release -y
	sudo mkdir -p /etc/apt/keyrings 
	curl -fsSL https://download.docker.com/linux/ubuntu/gpg | \
	  sudo gpg --dearmor -o /etc/apt/keyrings/docker.gpg
	echo \
  "deb [arch=$(dpkg --print-architecture) \
  signed-by=/etc/apt/keyrings/docker.gpg] \
  https://download.docker.com/linux/ubuntu \
  $(lsb_release -cs) stable" | \
  sudo tee /etc/apt/sources.list.d/docker.list > /dev/null
	sudo apt update
	sudo apt install \
	  docker-ce docker-ce-cli containerd.io docker-compose-plugin -y
	sudo usermod -aG docker $USER # if permission becomes an issue
	source ~/.bash_profile
	# If this docker install fails, can install docker compose through pip.
	# Using the latest version, hopefully does not break anything else.
	sudo service docker start
	docker-compose --version
	docker --version
}

redhat_env_setup(){
	sudo dnf config-manager \
  	--add-repo=https://download.docker.com/linux/centos/docker-ce.repo
	sudo yum update
	sudo yum install -y yum-utils git curl wget #device-mapper-persistent-data lvm2
	sudo yum install docker-ce --allowerasing # if dependency issues with podman
	sudo yum install -y docker-ce-cli containerd.io 
	sudo systemctl enable --now docker
	sudo usermod -aG docker $USER
	source ~/.bash_profile
	id -nG
	docker version
	curl -s https://api.github.com/repos/docker/compose/releases/latest | \
	  grep browser_download_url  | \
	  grep docker-compose-linux-x86_64 | cut -d '"' -f 4 | wget -qi -
	chmod +x docker-compose-linux-x86_64
	sudo mv docker-compose-linux-x86_64 /usr/local/bin/docker-compose
	docker-compose version
	rm docker-compose-linux*
}

docker_setup(){
	docker-compose up -d --quiet-pull
}

repo_setup(){
  umask 0002
	git clone https://github.com/MaastrichtU-CDS/protrait_fairifier2.git
	cd fairifier2
	cp .env.example .env
}

echo "Running the process as sudo"
echo "Setting up the environment"
source /etc/os-release
if [ ${ID_LIKE} == "debian" ]; then
  ubuntu_env_setup
elif [ ${ID_LIKE} == "fedora" ]; then
  redhat_env_setup
else
  echo ${ID_LIKE}
  echo "This script does not support your OS!"
fi

echo "Downloading the repo and creating the environment file for airflow"
repo_setup

echo "Creating docker containers"
docker_setup

echo "Done. Airflow can be accessed on 8080, Graphdb on 7200, term mapper on 5005"